Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003268

Physical Location & Seq

Genomic Coordinates Reverse (-)

3242413 .. 3245495

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGGAACAACACCATAGTGCTGCTGCAGAACATGCTCTCTCACTCCTCCTCCTGCTTCTCTCACTATCTTCACTTGCTCTGAGCGCCACAGACCCGAACGACCTTGCAATCCTCAACCAGCTGAGAAAAAATCTAGAAAACCCAGAGCTCTTGAAGTGGCCGGAAAATGGCGACGACCCATGTGGGGCCAGGTGGGCCCACGTCTTCTGCGCCGGTTCGAGAGTGTCCCAGATTCAGGTCCAGAACCTTGGCCTGAAGGGTCCTCTGCCCCAGAACTTCAACCAGCTCACTGAGCTCACAAACATTGGCCTCCAGAGGAACCACTTCAGTGGGCCCCTCCCTTCCCTCAAAGGGCTGTCGAAGCTCCAGTTTGCTTACTTGGATTTCAACGACTTCACTTCGATTCCTGTCGACTTCTTCGAAGGTCTCGATTCTCTGGAGGTTTTGGCTTTGGACGACAACAATTTGAATGCCACGACAGGCTGGAATTTCCCTCCTCAGCTGGGGAACTCGGCGCAGTTGCAGAATCTTAGTTGCATAAGTTGTAATCTGGTTGGTCTGTTGCCCGATTTCCTCGGAAACATGTCGTCCCTAACGGTTTTGCAACTGTCGGGCAACGGACTGTCCGGCGGGATTCCACCGAGCTTTAACGGCCTTAATTTGCAGATACTTTGGCTGAACAATCCCACCGGCGACGGATTGAGTGGTCCGATTGATGTTCTGACCACAATGGTGCAGCTCAACAGCGTGTGGCTCCACGGGAATCAGTTTTCCGGCGTGATTCCGAACAGCATTGGTAATTTAACTTCTTTGAAAATCGATCTTAATCTTAATCAAAACCAGTTTGTTGGTTTTGTTCCTGATGGTTTGGCTAATTTAGCACTTGATAGTTTGAACTTGAACAATAATCATTTGATGGGTCCAATCCCGAAATTCAAAGCCCGCAATGCGCGTTTTGATTCGAATGCGTTTTGTCAATCCACTCCCGGGGTTCCTTGCGCCGCGGAGGTTATGGCGCTTATCGAGTTCCTTGACGGGTTGAATTACCCTTCAACGCTTGTTTCTAAATGGTCTGGTAATGATCCGTGCCGGTCGTGGTTGGGAGTGAGTTGTGGGAACGATGGGAAGGTGTCTGTTATAAATCTGCCCAAGTACAATCTGAATGGTACATTGAGTCCTTCGGTTGCAAAGTTAGAATCTCTTGTTCAAATTAGGCTTCAGAACAACAATTTGCAGGGTTCGGTTCCTGAAAATTGGACTAGCTTGAAATCCTTGACTGAGTTGGATCTTAGTGGGAACAATGTTTCCCCTCCATTGCCGAAATTCAGTAGCACTGTCAAAGTTGCCGTTGATGGGAATCGTTTGTTTAATGGTAATCCATCTGCGGCAGGGGCAGCACCAGAAGATAGCCCTTCCTCCTCCACAGATTCAGGTTCTCATGTCAATGGTACTTCTCAACTGAACCAACATAAAGCATCGAAAAGGTCTAGTACTGTTTTAATTGTAGCTCCGGTTGCAAGTGTTGGTGTTATTGCGTTTTTGCTTGTAATTCCTTTATCTATGTACTGTAAGAAGAGAAGAGATGCATTCAAGAATTCAACTTCCCATGTAATTCACCCAAGAGATGCATCTGATTCGGATAGTATGGTTAAGGTTGTTGTTGCCAGTAATACCAATGGAAGCGCTTCTACAGTTACAGGGAGCTCTGCAAGCAGAAACAGTAGTGGAATAGGTGAGTCCCATGTCATTGAAGCGGGGAATCTCATCATATCAGTTCAAGTTCTTCGAAACGTGACAAACAATTTCGCCCCAGAAAATGAGCTAGGCCGTGGTGGCTTTGGGGTGGTTTATAAGGGAGAACTGGATGACGGTACAAAAATAGCAGTAAAAAGAATGGAGGCTGGTGTGATTAGCAACAAAGCCTTGGATGAATTCCAGGCCGAAATTGCAGTTCTGTCGAAGGTCAGACACCGTCATTTGGTATCACTTCTGGGGTATTCCGTTGAGGGAAATGAGAGAATTCTTGTCTATGAGTATATGCCTCAGGGGGCTCTAAGCAGGCATCTTTTCCGTTGGAAGACCTTCGAATTAGAGCCACTCTCTTGGAAGAGGAGGCTAAACATTGCCTTGGATGTTGCTAGGGGGATGGATTATCTTCACAATCTAGCTCACAAAAGCTTCATACACAGAGATCTTAAATCATCAAATATCTTACTGGGTGATGATTTTAAAGCAAAAGTTTCGGATTTTGGATTGGTGAAACTGGCTCCTGATGGTGAAAGATCCGTTGTGACCAGGCTTGCCGGGACTTTTGGGTACTTAGCACCGGAGTATGCTGTGACGGGAAAAATTACAACGAAAGCAGATGTCTTCAGTTTCGGAGTTGTATTAATGGAGCTATTAACTGGAATGATGGCAATAGATGAGGATAGACCTGAAGAAAGTCAATACTTGGCTGCATGGTTCTGGCACATAAAATCGAATAAGGAGAAACTCATGGCTGCTATTGACCCAACTCTTGACAGAAATGAAGAAACATTTGAGAGCATCGCCATAATTGCAGAACTCGCTGGGCACTGCACTGCAAGGGAACCCAGCCAAAGACCGGATATGAGCCATGCCGTGAATGTATTGTCCCCGCTTGTTGAAAAATGGAAACCTATCGACGATGAGAATGAGGAGTATTCTGGGATTGATTATAGCCTGCCGCTGAACCAGATGGTGAAGGGTTGGCAGGACGCAGAAGGAAAGGACTCCAGTTATCTGAACCTGGAAGACAGCAAGGGGAGCATACCGGCAAGGCCAACTGGCTTTGCAGAGTCTTTTACTTCCGCTGATGGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

949

Amino Acids

102.78

Weight (kDa)

5.56

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	335 - 371	3.7e-07	Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr	PF07714	605 - 877	4.2e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	605 - 876	2.3e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26630 FvH4_3g26630 FvH4_6g20300
malus_domestica	MD03G1154600.v1.1 MD12G1040200.v1.1 MD14G1038700.v1.1
prunus_persica	Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.7G094700_v2.0.a1
pyrus_communis	pycom03g10840 pycom12g03440 pycom14g03340
rosa_chinensis	RchiOBHm_Chr3g0475921 RchiOBHm_Chr5g0048201
rosa_laevigata	RLG00000023801 RLG00000034502
rosa_multiflora	Rmu_sc0001408.1_g000015 Rmu_sc0009168.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033720 Rroxscaffold_6G00405730
rosa_rugosa	Rorug03G0151900 Rorug05G0237000 Rorug05G0237100
rosa_samantha	Rh3AG202700 Rh3BG232600 Rh3CG228000 Rh3DG228200 Rh5AG316200 Rh5BG326800 Rh5CG353000 Rh5DG337800
rosa_wichuraiana	Rw3G018440 Rw5G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1139, 1851
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	2 cut(s)	952, 1004
AciI	CCGC	9 cut(s)	630, 943, 1002, 1004, 1385, 1754, 2639, 2708, 2832
AclWI	GGATC	3 cut(s)	1076, 1293, 2277
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	6 cut(s)	487, 932, 1322, 1594, 1931, 2019
AcuI	CTGAAG	5 cut(s)	275, 310, 1202, 2356, 2457
AfaI	GTAC	7 cut(s)	1154, 1168, 1450, 1492, 1565, 1873, 2318
AfeI	AGCGCT	1 cut(s)	1684
AfiI	CCNNNNNNNGG	9 cut(s)	167, 184, 235, 351, 503, 987, 1353, 1978, 2605
AflIII	ACRYGT	1 cut(s)	582
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	4 cut(s)	188, 1935, 2294, 2769
AleI	CACNNNNGTG	3 cut(s)	15, 327, 731
AloI	GAACNNNNNNTCC	2 cut(s)	1289, 1321
Alw21I	GWGCWC	3 cut(s)	150, 297, 1706
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	3 cut(s)	1076, 1293, 2277
Ama87I	CYCGRG	1 cut(s)	986
Aor51HI	AGCGCT	1 cut(s)	1684
ApaI	GGGCCC	2 cut(s)	199, 336
ApeKI	GCWGC	6 cut(s)	20, 23, 736, 1394, 2456, 2501
ApoI	RAATTY	6 cut(s)	487, 932, 1322, 1594, 1931, 2019
AseI	ATTAAT	1 cut(s)	2390
Asp700I	GAANNNNTTC	3 cut(s)	323, 1684, 2081
AspLEI	GCGC	7 cut(s)	86, 212, 517, 952, 1001, 1018, 1685
AspS9I	GGNCC	9 cut(s)	186, 195, 196, 238, 260, 332, 333, 707, 920
AsuC2I	CCSGG	3 cut(s)	987, 988, 2305
AsuHPI	GGTGA	6 cut(s)	1607, 1745, 2231, 2269, 2288, 2734
AsuII	TTCGAA	4 cut(s)	420, 962, 1786, 2085
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	4 cut(s)	238, 260, 707, 920
AxyI	CCTNAGG	1 cut(s)	2043
BaeGI	GKGCMC	3 cut(s)	199, 336, 2577
BanII	GRGCYC	6 cut(s)	150, 199, 297, 336, 1706, 2053
BarI	GAAGNNNNNNTAC	4 cut(s)	790, 822, 1672, 1704
BbsI	GAAGAC	4 cut(s)	196, 2084, 2362, 2781
Bbv12I	GWGCWC	3 cut(s)	150, 297, 1706
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	6 cut(s)	7, 10, 748, 1406, 2443, 2488
BceAI	ACGGC	4 cut(s)	667, 1331, 1812, 2606
BcgI	CGANNNNNNTGC	6 cut(s)	1617, 1651, 1938, 1972, 2223, 2257
BciT130I	CCWGG	4 cut(s)	190, 1937, 2296, 2771
BcnI	CCSGG	3 cut(s)	987, 988, 2305
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	6 cut(s)	134, 1260, 1488, 1823, 2139, 2165
BfmI	CTRYAG	2 cut(s)	24, 1689
BfoI	RGCGCY	3 cut(s)	87, 1019, 1686
BglI	GCCNNNNNGGC	2 cut(s)	194, 1833
BglII	AGATCT	1 cut(s)	2191
BisI	GCNGC	9 cut(s)	21, 24, 737, 1002, 1386, 1395, 2457, 2502, 2708
BlsI	GCNGC	9 cut(s)	22, 25, 738, 1003, 1387, 1396, 2458, 2503, 2709
BmcAI	AGTACT	1 cut(s)	1492
Bme1390I	CCNGG	7 cut(s)	190, 987, 988, 1937, 2296, 2305, 2771
Bme18I	GGWCC	4 cut(s)	238, 260, 707, 920
BmeT110I	CYCGRG	1 cut(s)	986
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	9 cut(s)	186, 195, 196, 238, 260, 332, 333, 707, 920
BmrFI	CCNGG	7 cut(s)	190, 987, 988, 1937, 2296, 2305, 2771
BmrI	ACTGGG	1 cut(s)	2225
BmsI	GCATC	6 cut(s)	1484, 1573, 1615, 1637, 2071, 2556
BmuI	ACTGGG	1 cut(s)	2225
BpiI	GAAGAC	4 cut(s)	196, 2084, 2362, 2781
BplI	GAGNNNNNCTC	2 cut(s)	2084, 2116
BpmI	CTGGAG	4 cut(s)	296, 350, 458, 2740
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	4 cut(s)	420, 962, 1786, 2085
BpuMI	CCSGG	3 cut(s)	987, 988, 2305
Bsa29I	ATCGAT	1 cut(s)	819
BsaBI	GATNNNNATC	2 cut(s)	825, 1356
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	9 cut(s)	247, 574, 757, 986, 987, 1002, 1828, 1923, 2127
BsaWI	WCCGGW	3 cut(s)	1510, 2326, 2605
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	9 cut(s)	167, 184, 235, 351, 503, 987, 1353, 1978, 2605
Bse118I	RCCGGY	4 cut(s)	212, 689, 1089, 2794
Bse1I	ACTGG	9 cut(s)	367, 841, 1665, 1866, 2220, 2268, 2410, 2757, 2812
Bse21I	CCTNAGG	1 cut(s)	2043
Bse3DI	GCAATG	3 cut(s)	952, 1313, 2121
Bse8I	GATNNNNATC	2 cut(s)	825, 1356
BseBI	CCWGG	4 cut(s)	190, 1937, 2296, 2771
BseCI	ATCGAT	1 cut(s)	819
BseDI	CCNNGG	9 cut(s)	247, 574, 757, 986, 987, 1002, 1828, 1923, 2127
BseGI	GGATG	4 cut(s)	1870, 1933, 2137, 2151
BseJI	GATNNNNATC	2 cut(s)	825, 1356
BseLI	CCNNNNNNNGG	9 cut(s)	167, 184, 235, 351, 503, 987, 1353, 1978, 2605
BseMI	GCAATG	3 cut(s)	952, 1313, 2121
BseMII	CTCAG	6 cut(s)	71, 113, 282, 512, 1269, 2057
BseNI	ACTGG	9 cut(s)	367, 841, 1665, 1866, 2220, 2268, 2410, 2757, 2812
BseRI	GAGGAG	6 cut(s)	35, 38, 486, 1408, 2125, 2693
BseSI	GKGCMC	3 cut(s)	199, 336, 2577
BseXI	GCAGC	6 cut(s)	7, 10, 748, 1406, 2443, 2488
BseYI	CCCAGC	3 cut(s)	502, 2570, 2594
BsgI	GTGCAG	2 cut(s)	755, 2563
Bsh1236I	CGCG	2 cut(s)	952, 1004
Bsh1285I	CGRYCG	1 cut(s)	1094
BshVI	ATCGAT	1 cut(s)	819
BsiEI	CGRYCG	1 cut(s)	1094
BsiHKAI	GWGCWC	3 cut(s)	150, 297, 1706
BsiHKCI	CYCGRG	1 cut(s)	986
BslFI	GGGAC	5 cut(s)	211, 574, 1723, 2320, 2620
BslI	CCNNNNNNNGG	9 cut(s)	167, 184, 235, 351, 503, 987, 1353, 1978, 2605
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	5 cut(s)	211, 574, 1723, 2320, 2620
BsmI	GAATGC	3 cut(s)	475, 970, 1586
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	986
Bsp119I	TTCGAA	4 cut(s)	420, 962, 1786, 2085
Bsp120I	GGGCCC	2 cut(s)	195, 332
Bsp1286I	GDGCHC	7 cut(s)	150, 199, 297, 336, 1706, 2053, 2577
Bsp143I	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
BspACI	CCGC	9 cut(s)	630, 943, 1002, 1004, 1385, 1754, 2639, 2708, 2832
BspCNI	CTCAG	6 cut(s)	72, 114, 283, 511, 1270, 2056
BspDI	ATCGAT	1 cut(s)	819
BspFNI	CGCG	2 cut(s)	952, 1004
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	3 cut(s)	1076, 1293, 2277
BspT104I	TTCGAA	4 cut(s)	420, 962, 1786, 2085
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	3 cut(s)	952, 1313, 2121
BsrFI	RCCGGY	4 cut(s)	212, 689, 1089, 2794
BsrI	ACTGG	9 cut(s)	367, 841, 1665, 1866, 2220, 2268, 2410, 2757, 2812
BssAI	RCCGGY	4 cut(s)	212, 689, 1089, 2794
BssECI	CCNNGG	9 cut(s)	247, 574, 757, 986, 987, 1002, 1828, 1923, 2127
BssMI	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
BssT1I	CCWWGG	3 cut(s)	247, 1923, 2127
Bst2UI	CCWGG	4 cut(s)	190, 1937, 2296, 2771
Bst6I	CTCTTC	3 cut(s)	1568, 1573, 2102
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBI	TTCGAA	4 cut(s)	420, 962, 1786, 2085
BstC8I	GCNNGC	5 cut(s)	943, 1711, 2060, 2301, 2705
BstDSI	CCRYGG	3 cut(s)	757, 1002, 1828
BstF5I	GGATG	4 cut(s)	1870, 1933, 2137, 2151
BstFNI	CGCG	2 cut(s)	952, 1004
BstH2I	RGCGCY	3 cut(s)	87, 1019, 1686
BstHHI	GCGC	7 cut(s)	86, 212, 517, 952, 1001, 1018, 1685
BstKTI	GATC	5 cut(s)	823, 1084, 1288, 2194, 2285
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
BstMCI	CGRYCG	1 cut(s)	1094
BstNI	CCWGG	4 cut(s)	190, 1937, 2296, 2771
BstNSI	RCATGY	2 cut(s)	35, 586
BstSCI	CCNGG	7 cut(s)	188, 985, 986, 1935, 2294, 2303, 2769
BstSFI	CTRYAG	2 cut(s)	24, 1689
BstSLI	GKGCMC	3 cut(s)	199, 336, 2577
BstUI	CGCG	2 cut(s)	952, 1004
BstV1I	GCAGC	6 cut(s)	7, 10, 748, 1406, 2443, 2488
BstV2I	GAAGAC	4 cut(s)	196, 2084, 2362, 2781
BstX2I	RGATCY	3 cut(s)	1285, 2191, 2282
BstXI	CCANNNNNNTGG	4 cut(s)	248, 329, 848, 2103
BstYI	RGATCY	3 cut(s)	1285, 2191, 2282
Bsu15I	ATCGAT	1 cut(s)	819
Bsu36I	CCTNAGG	1 cut(s)	2043
BsuTUI	ATCGAT	1 cut(s)	819
BtgI	CCRYGG	3 cut(s)	757, 1002, 1828
BtgZI	GCGATG	1 cut(s)	2533
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	1870, 1933, 2137, 2151
BtsI	GCAGTG	2 cut(s)	2575, 2580
BtsIMutI	CAGTG	5 cut(s)	288, 334, 1332, 2575, 2580
Cac8I	GCNNGC	5 cut(s)	943, 1711, 2060, 2301, 2705
CfoI	GCGC	7 cut(s)	86, 212, 517, 952, 1001, 1018, 1685
Cfr10I	RCCGGY	4 cut(s)	212, 689, 1089, 2794
Cfr13I	GGNCC	9 cut(s)	186, 195, 196, 238, 260, 332, 333, 707, 920
Cfr42I	CCGCGG	1 cut(s)	1005
Cfr9I	CCCGGG	1 cut(s)	986
ClaI	ATCGAT	1 cut(s)	819
CseI	GACGC	1 cut(s)	2747
Csp6I	GTAC	7 cut(s)	1153, 1167, 1449, 1491, 1564, 1872, 2317
CviAII	CATG	9 cut(s)	32, 180, 583, 1439, 1607, 1742, 2460, 2497, 2618
CviQI	GTAC	7 cut(s)	1153, 1167, 1449, 1491, 1564, 1872, 2317
DpnI	GATC	5 cut(s)	822, 1083, 1287, 2193, 2284
DpnII	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
DraI	TTTAAA	1 cut(s)	2230
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	3 cut(s)	1568, 1573, 2102
EarI	CTCTTC	3 cut(s)	1568, 1573, 2102
Ecl136II	GAGCTC	3 cut(s)	148, 295, 1704
Eco130I	CCWWGG	3 cut(s)	247, 1923, 2127
Eco24I	GRGCYC	6 cut(s)	150, 199, 297, 336, 1706, 2053
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	4 cut(s)	238, 260, 707, 920
Eco47III	AGCGCT	1 cut(s)	1684
Eco53kI	GAGCTC	3 cut(s)	148, 295, 1704
Eco57I	CTGAAG	5 cut(s)	275, 310, 1202, 2356, 2457
Eco81I	CCTNAGG	1 cut(s)	2043
Eco88I	CYCGRG	1 cut(s)	986
EcoICRI	GAGCTC	3 cut(s)	148, 295, 1704
EcoO109I	RGGNCCY	2 cut(s)	260, 333
EcoRI	GAATTC	3 cut(s)	1594, 1931, 2019
EcoRII	CCWGG	4 cut(s)	188, 1935, 2294, 2769
EcoT14I	CCWWGG	3 cut(s)	247, 1923, 2127
EcoT22I	ATGCAT	2 cut(s)	1588, 1630
EcoT38I	GRGCYC	6 cut(s)	150, 199, 297, 336, 1706, 2053
ErhI	CCWWGG	3 cut(s)	247, 1923, 2127
FaeI	CATG	9 cut(s)	35, 183, 586, 1442, 1610, 1745, 2463, 2500, 2621
FaqI	GGGAC	5 cut(s)	211, 574, 1723, 2320, 2620
FatI	CATG	9 cut(s)	31, 179, 582, 1438, 1606, 1741, 2459, 2496, 2617
FauI	CCCGC	4 cut(s)	623, 950, 1747, 2646
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	9 cut(s)	21, 24, 737, 1002, 1386, 1395, 2457, 2502, 2708
FokI	GGATG	4 cut(s)	1877, 1940, 2144, 2158
FriOI	GRGCYC	6 cut(s)	150, 199, 297, 336, 1706, 2053
Fsp4HI	GCNGC	9 cut(s)	21, 24, 737, 1002, 1386, 1395, 2457, 2502, 2708
FspBI	CTAG	6 cut(s)	134, 1260, 1488, 1823, 2139, 2165
GlaI	GCGC	7 cut(s)	85, 211, 516, 951, 1000, 1017, 1684
GluI	GCNGC	9 cut(s)	21, 24, 737, 1002, 1386, 1395, 2457, 2502, 2708
GsaI	CCCAGC	3 cut(s)	506, 2574, 2598
GsuI	CTGGAG	4 cut(s)	296, 350, 458, 2740
HaeII	RGCGCY	3 cut(s)	87, 1019, 1686
HgaI	GACGC	1 cut(s)	2747
HhaI	GCGC	7 cut(s)	86, 212, 517, 952, 1001, 1018, 1685
Hin1II	CATG	9 cut(s)	35, 183, 586, 1442, 1610, 1745, 2463, 2500, 2621
Hin6I	GCGC	7 cut(s)	84, 210, 515, 950, 999, 1016, 1683
HinP1I	GCGC	7 cut(s)	84, 210, 515, 950, 999, 1016, 1683
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	2176
HphI	GGTGA	6 cut(s)	1607, 1745, 2231, 2269, 2288, 2734
Hpy166II	GTNNAC	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	3 cut(s)	176, 698, 2669
HpyCH4IV	ACGT	2 cut(s)	201, 1791
HpySE526I	ACGT	2 cut(s)	201, 1791
Hsp92II	CATG	9 cut(s)	35, 183, 586, 1442, 1610, 1745, 2463, 2500, 2621
HspAI	GCGC	7 cut(s)	84, 210, 515, 950, 999, 1016, 1683
KspI	CCGCGG	1 cut(s)	1005
Kzo9I	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
LmnI	GCTCC	7 cut(s)	369, 759, 1513, 1701, 2272, 2395, 2787
Lsp1109I	GCAGC	6 cut(s)	7, 10, 748, 1406, 2443, 2488
LweI	GCATC	6 cut(s)	1484, 1573, 1615, 1637, 2071, 2556
MaeI	CTAG	6 cut(s)	134, 1260, 1488, 1823, 2139, 2165
MaeII	ACGT	2 cut(s)	201, 1791
MaeIII	GTNAC	4 cut(s)	1693, 1792, 2290, 2338
MalI	GATC	5 cut(s)	822, 1083, 1287, 2193, 2284
MboI	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
MflI	RGATCY	3 cut(s)	1285, 2191, 2282
MhlI	GDGCHC	7 cut(s)	150, 199, 297, 336, 1706, 2053, 2577
MlyI	GAGTC	4 cut(s)	1183, 1745, 2747, 2828
MmeI	TCCRAC	2 cut(s)	1263, 2054
Mph1103I	ATGCAT	2 cut(s)	1588, 1630
MroXI	GAANNNNTTC	3 cut(s)	323, 1684, 2081
MslI	CAYNNNNRTG	4 cut(s)	15, 327, 731, 1443
MspA1I	CMGCKG	5 cut(s)	121, 502, 1004, 2710, 2834
MspR9I	CCNGG	7 cut(s)	190, 987, 988, 1937, 2296, 2305, 2771
Mva1269I	GAATGC	3 cut(s)	475, 970, 1586
MvaI	CCWGG	4 cut(s)	190, 1937, 2296, 2771
MvnI	CGCG	2 cut(s)	952, 1004
NciI	CCSGG	3 cut(s)	987, 988, 2305
NdeII	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
NlaIII	CATG	9 cut(s)	35, 183, 586, 1442, 1610, 1745, 2463, 2500, 2621
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	3 cut(s)	1792, 2290, 2338
NsiI	ATGCAT	2 cut(s)	1588, 1630
NspI	RCATGY	2 cut(s)	35, 586
NspV	TTCGAA	4 cut(s)	420, 962, 1786, 2085
OliI	CACNNNNGTG	3 cut(s)	15, 327, 731
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	2 cut(s)	417, 426
PctI	GAATGC	3 cut(s)	475, 970, 1586
PdmI	GAANNNNTTC	3 cut(s)	323, 1684, 2081
PflFI	GACNNNGTC	1 cut(s)	1971
PkrI	GCNGC	9 cut(s)	22, 25, 738, 1003, 1387, 1396, 2458, 2503, 2709
PleI	GAGTC	4 cut(s)	1182, 1744, 2747, 2827
PpsI	GAGTC	4 cut(s)	1182, 1744, 2747, 2827
PpuMI	RGGWCCY	1 cut(s)	260
PscI	ACATGT	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	2390
PsiI	TTATAA	2 cut(s)	1139, 1851
Psp124BI	GAGCTC	3 cut(s)	150, 297, 1706
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	4 cut(s)	188, 1935, 2294, 2769
PspFI	CCCAGC	3 cut(s)	502, 2570, 2594
PspGI	CCWGG	4 cut(s)	188, 1935, 2294, 2769
PspOMI	GGGCCC	2 cut(s)	195, 332
PspPI	GGNCC	9 cut(s)	186, 195, 196, 238, 260, 332, 333, 707, 920
PspPPI	RGGWCCY	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	3 cut(s)	1285, 2191, 2282
PsyI	GACNNNGTC	1 cut(s)	1971
PvuII	CAGCTG	2 cut(s)	121, 502
RsaI	GTAC	7 cut(s)	1154, 1168, 1450, 1492, 1565, 1873, 2318
RsaNI	GTAC	7 cut(s)	1153, 1167, 1449, 1491, 1564, 1872, 2317
RseI	CAYNNNNRTG	4 cut(s)	15, 327, 731, 1443
SacI	GAGCTC	3 cut(s)	150, 297, 1706
SacII	CCGCGG	1 cut(s)	1005
SalI	GTCGAC	1 cut(s)	410
SatI	GCNGC	9 cut(s)	21, 24, 737, 1002, 1386, 1395, 2457, 2502, 2708
Sau3AI	GATC	5 cut(s)	820, 1081, 1285, 2191, 2282
Sau96I	GGNCC	9 cut(s)	186, 195, 196, 238, 260, 332, 333, 707, 920
ScaI	AGTACT	1 cut(s)	1492
SchI	GAGTC	4 cut(s)	1183, 1745, 2747, 2828
ScrFI	CCNGG	7 cut(s)	190, 987, 988, 1937, 2296, 2305, 2771
SduI	GDGCHC	7 cut(s)	150, 199, 297, 336, 1706, 2053, 2577
SfaNI	GCATC	6 cut(s)	1484, 1573, 1615, 1637, 2071, 2556
SfcI	CTRYAG	2 cut(s)	24, 1689
SfiI	GGCCNNNNNGGCC	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	1005
SfuI	TTCGAA	4 cut(s)	420, 962, 1786, 2085
SgrAI	CRCCGGYG	1 cut(s)	689
SgrBI	CCGCGG	1 cut(s)	1005
SinI	GGWCC	4 cut(s)	238, 260, 707, 920
SmaI	CCCGGG	1 cut(s)	988
SmiMI	CAYNNNNRTG	4 cut(s)	15, 327, 731, 1443
SsiI	CCGC	9 cut(s)	630, 943, 1002, 1004, 1385, 1754, 2639, 2708, 2832
SspMI	CTAG	6 cut(s)	134, 1260, 1488, 1823, 2139, 2165
SstI	GAGCTC	3 cut(s)	150, 297, 1706
StyD4I	CCNGG	7 cut(s)	188, 985, 986, 1935, 2294, 2303, 2769
StyI	CCWWGG	3 cut(s)	247, 1923, 2127
TaiI	ACGT	2 cut(s)	204, 1794
TatI	WGTACW	3 cut(s)	1152, 1490, 1563
TauI	GCSGC	3 cut(s)	1004, 1388, 2710
TscAI	CASTG	5 cut(s)	295, 334, 1339, 2582, 2587
TseFI	GTSAC	3 cut(s)	1792, 2290, 2338
TseI	GCWGC	6 cut(s)	20, 23, 736, 1394, 2456, 2501
Tsp45I	GTSAC	3 cut(s)	1792, 2290, 2338
TspDTI	ATGAA	3 cut(s)	1944, 2170, 2544
TspGWI	ACGGA	6 cut(s)	633, 711, 1074, 1990, 2060, 2275
TspMI	CCCGGG	1 cut(s)	986
TspRI	CASTG	5 cut(s)	295, 334, 1339, 2582, 2587
Tth111I	GACNNNGTC	1 cut(s)	1971
VpaK11BI	GGWCC	4 cut(s)	238, 260, 707, 920
VspI	ATTAAT	1 cut(s)	2390
XapI	RAATTY	6 cut(s)	487, 932, 1322, 1594, 1931, 2019
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	2 cut(s)	35, 586
XmaI	CCCGGG	1 cut(s)	986
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	3 cut(s)	323, 1684, 2081
XspI	CTAG	6 cut(s)	134, 1260, 1488, 1823, 2139, 2165
ZrmI	AGTACT	1 cut(s)	1492
Zsp2I	ATGCAT	2 cut(s)	1588, 1630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.