Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003268

Physical Location & Seq

Genomic Coordinates Reverse (-)

24953203 .. 24955339

Gene Structure 2137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAAGCTGCAGGTTCTTTCTGTGTTCTTTTTTGGCAGATTATCTTCTTTGTTAGTGTAGTTTTGGAGGGCATCAATGGCGCTCAAGCTAATGGTTGGCTTAACGCTCATGCAACTTTCTATGGGGTCAACCAGGACCCTGCCACCCTTGGAGGTGCGTGTGGTTATGGAAATACAATGCTTGCGGGGTTCGGAGTGAACACAGCAGCAGTTAGTGGCATACTTTTCAGAGGTGGCGAGGCATGTGGTGCTTGTTACCAAGTGATGTGCAACTATAAGTTGGATCCAAAGTGGTGCCTTCAACGACGAGCCGTGACTGTATCAGCCACCAATTTCTGCCCCCCAAACAACAATGGAGGGTGGTGCAATCCCCCTCACCACCACTTCGACATGTCTATGCCGGCTTTTCTTCGCATTGCACGACAAGGAAATGAAGGCATTGTTCCTGTGATCTACAGAAGGGTGGCTTGTAAACGAAGAGGAGGAGTCCGATTCACATTAAAGGGGCAGTTGAATTTTAACATGGTGATGATATCGAATGTTGGCGGAAGCGGCGCCGCGAAGGGGGCGTGGATAAGGGGGTCGAGGATGAGAAGCGGCACATGGATACCGATGCATAGGAATTGGGGTGCGAATTGGCAAAGCAGCATCGACCTGAGAAACCAGCAACTTTCTTTCAAGCTCACTTTGATTGATGGAAAAGCCCTAGTGTTTTACAACGTTGTTCCTTCCACTTGGAGATTTGGACAAACATTTTCATCCCAGAACCAGTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

259

Amino Acids

28.45

Weight (kDa)

9.97

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	38 - 126	1.9e-07	EXPB1-like domain 1
DPBB_1	PF03330	68 - 152	3.4e-19	Lytic transglycolase
Expansin_C	PF01357	163 - 243	9.2e-23	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26630 FvH4_3g26630 FvH4_6g20300
malus_domestica	MD03G1154600.v1.1 MD12G1040200.v1.1 MD14G1038700.v1.1
prunus_persica	Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.7G094700_v2.0.a1
pyrus_communis	pycom03g10840 pycom12g03440 pycom14g03340
rosa_chinensis	RchiOBHm_Chr3g0475921 RchiOBHm_Chr5g0048201
rosa_laevigata	RLG00000023801 RLG00000034502
rosa_multiflora	Rmu_sc0001408.1_g000015 Rmu_sc0009168.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033720 Rroxscaffold_6G00405730
rosa_rugosa	Rorug03G0151900 Rorug05G0237000 Rorug05G0237100
rosa_samantha	Rh3AG202700 Rh3BG232600 Rh3CG228000 Rh3DG228200 Rh5AG316200 Rh5BG326800 Rh5CG353000 Rh5DG337800
rosa_wichuraiana	Rw3G018440 Rw5G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	2 cut(s)	294, 554
AccII	CGCG	1 cut(s)	560
AciI	CCGC	5 cut(s)	185, 546, 552, 558, 597
AclI	AACGTT	1 cut(s)	720
AclWI	GGATC	2 cut(s)	278, 291
AcsI	RAATTY	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	564
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	302, 514, 679
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	8, 89, 682
AluI	AGCT	3 cut(s)	8, 89, 682
AlwI	GGATC	2 cut(s)	278, 291
ApeKI	GCWGC	3 cut(s)	8, 206, 645
ApoI	RAATTY	1 cut(s)	514
Asp700I	GAANNNNTTC	1 cut(s)	770
AspLEI	GCGC	2 cut(s)	83, 557
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	368, 538
AvaII	GGWCC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	283
BanI	GGYRCC	2 cut(s)	294, 554
BbvI	GCAGC	2 cut(s)	218, 657
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	2 cut(s)	9, 454
BfoI	RGCGCY	2 cut(s)	84, 558
BfuAI	ACCTGC	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	600
BisI	GCNGC	6 cut(s)	9, 207, 553, 558, 598, 646
BlsI	GCNGC	6 cut(s)	10, 208, 554, 559, 599, 647
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	4 cut(s)	138, 285, 296, 556
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	3 cut(s)	81, 603, 657
BpuEI	CTTGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	594, 758
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	2 cut(s)	495, 498
BseXI	GCAGC	2 cut(s)	218, 657
Bsh1236I	CGCG	1 cut(s)	560
BshNI	GGYRCC	2 cut(s)	294, 554
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	283, 450
BspACI	CCGC	5 cut(s)	185, 546, 552, 558, 597
BspCNI	CTCAG	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	4 cut(s)	138, 285, 296, 556
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	2 cut(s)	278, 291
BspT107I	GGYRCC	2 cut(s)	294, 554
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	283, 450
BssNI	GRCGYC	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	472
BstACI	GRCGYC	1 cut(s)	555
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	183, 402
BstDEI	CTNAG	2 cut(s)	656, 777
BstF5I	GGATG	2 cut(s)	594, 758
BstFNI	CGCG	1 cut(s)	560
BstH2I	RGCGCY	2 cut(s)	84, 558
BstHHI	GCGC	2 cut(s)	83, 557
BstKTI	GATC	2 cut(s)	286, 453
BstMBI	GATC	2 cut(s)	283, 450
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 248, 552, 566
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	246, 394
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	2 cut(s)	9, 454
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	218, 657
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	594, 758
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	2 cut(s)	183, 402
CfoI	GCGC	2 cut(s)	83, 557
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	5 cut(s)	110, 243, 391, 523, 603
CviJI	RGCY	9 cut(s)	8, 89, 100, 311, 326, 404, 467, 682, 704
CviKI_1	RGCY	9 cut(s)	8, 89, 100, 311, 326, 404, 467, 682, 704
DdeI	CTNAG	2 cut(s)	656, 777
DinI	GGCGCC	1 cut(s)	556
DpnI	GATC	2 cut(s)	285, 452
DpnII	GATC	2 cut(s)	283, 450
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	618
EgeI	GGCGCC	1 cut(s)	556
EheI	GGCGCC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	5 cut(s)	113, 246, 394, 526, 606
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FatI	CATG	5 cut(s)	109, 242, 390, 522, 602
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	6 cut(s)	9, 207, 553, 558, 598, 646
FokI	GGATG	2 cut(s)	601, 745
Fsp4HI	GCNGC	6 cut(s)	9, 207, 553, 558, 598, 646
FspBI	CTAG	1 cut(s)	707
GlaI	GCGC	2 cut(s)	82, 556
GluI	GCNGC	6 cut(s)	9, 207, 553, 558, 598, 646
HaeII	RGCGCY	2 cut(s)	84, 558
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	2 cut(s)	83, 557
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	5 cut(s)	113, 246, 394, 526, 606
Hin6I	GCGC	2 cut(s)	81, 555
HinP1I	GCGC	2 cut(s)	81, 555
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	486, 492
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	368, 538
Hpy166II	GTNNAC	3 cut(s)	130, 199, 473
Hpy188I	TCNGA	3 cut(s)	194, 230, 491
Hpy8I	GTNNAC	3 cut(s)	130, 199, 473
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	5 cut(s)	308, 428, 453, 556, 738
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	6 cut(s)	11, 113, 270, 366, 419, 616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 248, 552, 566
HpyF3I	CTNAG	2 cut(s)	656, 777
HpySE526I	ACGT	1 cut(s)	720
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	5 cut(s)	113, 246, 394, 526, 606
HspAI	GCGC	2 cut(s)	81, 555
KasI	GGCGCC	1 cut(s)	554
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	283, 450
LpnPI	CCDG	8 cut(s)	119, 146, 153, 414, 459, 668, 677, 776
Lsp1109I	GCAGC	2 cut(s)	218, 657
LweI	GCATC	3 cut(s)	81, 603, 657
MaeI	CTAG	1 cut(s)	707
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	2 cut(s)	254, 313
MalI	GATC	2 cut(s)	285, 452
MboI	GATC	2 cut(s)	283, 450
MboII	GAAGA	3 cut(s)	37, 401, 489
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	4 cut(s)	331, 514, 622, 634
Mly113I	GGCGCC	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	9 cut(s)	61, 146, 224, 232, 350, 384, 473, 476, 579
Mph1103I	ATGCAT	1 cut(s)	618
MroNI	GCCGGC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	3 cut(s)	102, 500, 519
MslI	CAYNNNNRTG	2 cut(s)	395, 527
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	78, 248, 552, 566
NaeI	GCCGGC	1 cut(s)	402
NarI	GGCGCC	1 cut(s)	555
NdeII	GATC	2 cut(s)	283, 450
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	5 cut(s)	113, 246, 394, 526, 606
NlaIV	GGNNCC	4 cut(s)	138, 285, 296, 556
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	618
NspI	RCATGY	2 cut(s)	246, 394
PciI	ACATGT	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PdiI	GCCGGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	1 cut(s)	492
PkrI	GCNGC	6 cut(s)	10, 208, 554, 559, 599, 647
PleI	GAGTC	1 cut(s)	494
PluTI	GGCGCC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	136
PscI	ACATGT	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	138, 285, 296, 556
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	395, 527
SaqAI	TTAA	3 cut(s)	102, 500, 519
SatI	GCNGC	6 cut(s)	9, 207, 553, 558, 598, 646
Sau3AI	GATC	2 cut(s)	283, 450
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	8 cut(s)	10, 16, 91, 157, 235, 657, 684, 723
SfaNI	GCATC	3 cut(s)	81, 603, 657
SfcI	CTRYAG	2 cut(s)	9, 454
SfoI	GGCGCC	1 cut(s)	556
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	395, 527
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	4 cut(s)	331, 514, 622, 634
SsiI	CCGC	5 cut(s)	185, 546, 552, 558, 597
SspDI	GGCGCC	1 cut(s)	554
SspMI	CTAG	1 cut(s)	707
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	4 cut(s)	387, 536, 584, 651
TasI	AATT	4 cut(s)	331, 514, 622, 634
TauI	GCSGC	3 cut(s)	555, 560, 600
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	3 cut(s)	102, 500, 519
Tru9I	TTAA	3 cut(s)	102, 500, 519
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	8, 206, 645
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	17, 447, 747
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	2 cut(s)	246, 394
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.