Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003268

Physical Location & Seq

Genomic Coordinates Forward (+)

48890996 .. 48906705

Gene Structure 15710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2910 bp

ATGGATAGGCAGTGGATGGTAGGCAATTTCCTGTTTTTGTGGCTATTGGCTGTGGTTTATGGTGCCACTGACCCTGATGATATGAAGATTCTGAATGATTTCAGAAGAGGGTTGGAGAATCCAGAGCTTCTTAAATGGCCAGAAAATGGGGATGACCCTTGTGGCTCCAAATGGCCTCATGTGTTTTGTAGTGGGGATAGAGTTACACAGATTCAAGTTCAGGGTATGGGGCTTAAAGGACCTCTGCCTCAGAACTTTAATCAACTCTCAAAGCTCTACAACCTTGGTCTTCAAAAGAACAACTTCAATGGCAAGTTACCCACGTTTAGTGGCTTATCTGAACTGCAATATGCTTATCTGGATAACAATGATTTTGATACTATCCCGTCCGATTTCTTCAATGGCCTTACCAGTCTCTCAGTCATGGCTTTGGATAACATTCCGCTGAATGCGTCTACCGGGTGGTATATTCCTAATGAGTTAGAAAACTCAGCTCAGCTACAAAATCTTTCCTTGATTGAGTGTAACTTGGTTGGACAACTGCCTGAATTCTTAGGCACATTGCCGAATCTCAGGATGCTGCAACTTTCGTTTAACAGATTAACTGGTGGTTTGCCCAAGAGTTTTGGACAGTCTTTGTTGCAGATTTTGTGGTTGAATAATCAAGATGGTGGTGGGATGACCGGTCCAATTGATGTTATTGGATCAATGACGTCTTTGACACAGGTTTGGCTGCATGGAAACAAATTCACAGGGACAATACCAGAGAACATTGGAGATCTTGTATCTCTTAAGGAACTCAACCTCAATGGTAACCAACTTGTTGGTCAGATTCCTCAAGCATTGGCTGACTTGAAGCTCGACAAATTGGACCTGGCAAACAACCAGTTAATGGGTGCAGTACCCAAGTTTCAGTCTGATAATGTTTCCTATAGTTCTAATTCATTTTGTCAAACTGATCCTGGGCTTCTATGTGCTCCACAAGTTACTGCACTTCTGGATTTTCTTGGTGATCTGAGTTACCCATCTAGTCTGACCTCTGACTGGTCTGGTAATGACCCCTGTGGGGGGCCATGGTTGGGAGTTAGTTGCAATCCGCAGTCAAAAGTTTCTGTCATCAATTTGCCTAGGCGCAAGCTAAATGGTACTCTGAGTCCTTCACTTGTGAATTTAGATTCTCTGATTGATATTAGGCTTGCTGGAAACAATATAAGTGGTACAGTTCCTACTAACCTCACTGAGTTGAAATCCTTGACAACATTGGATATAAGTGGAAACAATATTGAGCCTCCATTACCAAAATTTCGTGACAATGTGAGACTCATCACCGATGGAAATCCTCTTCTAGTTGCTAATAAAACAGCCCCGTCTCCTTTACCTACCAGAAGCCCACCCCCACTCCAACCTCCAGCTCCAGCAGACAATCCGCCACCAGATACCACAAAACCACCTCAATCACCAGTTTCCCCCAGTCCACCTTCGCCAGCTCACTCAAATGCAGGTGCACCTAAGTCAGAATCTCAACTCAAAAGCTCCAAAAGATCTAAACCAATTATTGTTGTGGCTGGAGTTGCAGTTATAGCTGTATTTGTGATTCTTCTGTTGATGTGTCTATCTATATACTGGTGTAAGTACAGAAAAAACAACTTGGAGGCTCCTTGTTCCATTGTGGTTCACCCTAAAGACCCATCTGATCCAGAAAACAAGCTTAAGATTGCAGTTTCTAGCAATACAAACGGAAGCTTATCAACTAAAACTGGGACTACTTATTTGAGTAACAACAGCAGTGGAACACAAAGTTCTCATATGATTGATTCCGGTAACCTTGTCATATCTGTTCAAGTTCTTCGAAAGGTGACCAATAACTTTGCACCTGAAAACGAGCTAGGCCATGGTGGATTTGGAACTGTTTACAAGGGTGAACTAGAAGATGGTACAAATCTGGCTGTTAAGAGAATGGAGGGTGGTGTAATCAGCAGTAAAGGATTGGATGAATTTCAGGCAGAAATTGCTGTTCTTTCCAAAGTCCGTCATCGACATTTGGTTTCTCTGTTGGGGTACTCCGTTGAAGGGAGTGAAAGGCTTCTTGTCTATGAGTATATGTCTCAAGGCGCTCTTAGCAGGCATCTTTTCCATTGGAAGACCCTGAGTCTGAAGCCTTTGTCTTGGACAAGGAGACTTATAATTGCATTGGATGTTGCCAGAGGGATGGAGTATCTGCACAGCTTAGCTCGCCAGACCTTCATTCACAGAGATCTCAAATCTTCTAATATTCTTTTGGGTGATGACTTCCGCGCAAAAGTTTCGGATTTTGGATTGGTTAAACTTGCTCCAGATGGGGAGAAATCTGTTGCGACTAGGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACAACTAAAGTAGATGTGTTCAGCTTTGGCGTAGTGTTAATGGAGCTTGTGACTGGATTAATGGCACTGGATGAGAACCGGCCCGAGGAAAGTCGTTACTTGGCTGAGTGGTTTTGGCGAATCAAGTCAAGCAAGGAGAAGCTTATGGCTGCAGTTGATCCAACTATTGAGGTTACTGAAGAAACTTTTGAGAGCATCTCCTTAATAGCTGATCTTGCCGGACATTGCACTGCGAGGGAGCCAACACATCGGCCTGACATGGGACATGCAGTGAACGTGCTAGGCCAACTTGTTGAAAAGTGGAAACCAGTTGATGATGAATCAGAAAGTTTCTCTGGAATCGATTATAATCAACCTCTTCCCCAGATGCTAAAAGTTTGGCAGCAAGCAGAAAGCAGAGAGGTCAGCTATACTAGCCTGGAGGACAGCAAGGGAAGTATTCCTGCTAGACCCGCAGGATTTGCAGATTCCTTCACTTCTGCCGATGGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

969

Amino Acids

105.87

Weight (kDa)

5.6

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	141 - 283	2.3e-07	Leucine-rich repeat region
LRR_8	PF13855	239 - 297	7.8e-07	Leucine rich repeat
LRRNT_2	PF08263	327 - 365	1.1e-06	Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr	PF07714	626 - 896	2.1e-44	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	626 - 896	2.1e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26630 FvH4_3g26630 FvH4_6g20300
malus_domestica	MD03G1154600.v1.1 MD12G1040200.v1.1 MD14G1038700.v1.1
prunus_persica	Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.7G094700_v2.0.a1
pyrus_communis	pycom03g10840 pycom12g03440 pycom14g03340
rosa_chinensis	RchiOBHm_Chr3g0475921 RchiOBHm_Chr5g0048201
rosa_laevigata	RLG00000023801 RLG00000034502
rosa_multiflora	Rmu_sc0001408.1_g000015 Rmu_sc0009168.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033720 Rroxscaffold_6G00405730
rosa_rugosa	Rorug03G0151900 Rorug05G0237000 Rorug05G0237100
rosa_samantha	Rh3AG202700 Rh3BG232600 Rh3CG228000 Rh3DG228200 Rh5AG316200 Rh5BG326800 Rh5CG353000 Rh5DG337800
rosa_wichuraiana	Rw3G018440 Rw5G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2183, 2763
AarI	CACCTGC	1 cut(s)	1490
AatII	GACGTC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	1490
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	2 cut(s)	146, 892
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	1 cut(s)	2295
AciI	CCGC	5 cut(s)	443, 1097, 1427, 2293, 2868
AclWI	GGATC	4 cut(s)	712, 953, 1688, 2567
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	5 cut(s)	548, 746, 1168, 1301, 1994
AcuI	CTGAAG	2 cut(s)	2174, 2613
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	6 cut(s)	903, 1147, 1219, 1634, 1936, 2060
AflII	CTTAAG	2 cut(s)	791, 1709
AgeI	ACCGGT	1 cut(s)	683
AhdI	GACNNNNNGTC	1 cut(s)	2148
AjnI	CCWGG	3 cut(s)	873, 961, 2832
Alw21I	GWGCWC	2 cut(s)	979, 1507
Alw26I	GTCTC	5 cut(s)	419, 1312, 1374, 2109, 2170
Alw44I	GTGCAC	1 cut(s)	1503
AlwI	GGATC	4 cut(s)	712, 953, 1688, 2567
Ama87I	CYCGRG	1 cut(s)	2498
AoxI	GGCC	8 cut(s)	137, 173, 403, 1070, 1888, 2495, 2666, 2698
ApaLI	GTGCAC	1 cut(s)	1503
ApeKI	GCWGC	4 cut(s)	580, 733, 2564, 2797
ApoI	RAATTY	5 cut(s)	548, 746, 1168, 1301, 1994
ArsI	GACNNNNNNTTYG	2 cut(s)	1753, 1785
AseI	ATTAAT	1 cut(s)	2474
AsiGI	ACCGGT	1 cut(s)	683
Asp700I	GAANNNNTTC	3 cut(s)	98, 302, 2082
AspA2I	CCTAGG	1 cut(s)	1127
AspLEI	GCGC	3 cut(s)	1134, 2114, 2297
AspS9I	GGNCC	5 cut(s)	239, 686, 871, 1070, 2496
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	7 cut(s)	1022, 1318, 1449, 1667, 1867, 1931, 2294
AsuII	TTCGAA	1 cut(s)	1849
AvaI	CYCGRG	1 cut(s)	2498
AvaII	GGWCC	3 cut(s)	239, 686, 871
AvrII	CCTAGG	1 cut(s)	1127
BaeGI	GKGCMC	1 cut(s)	1507
BalI	TGGCCA	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	281, 2147
Bbv12I	GWGCWC	2 cut(s)	979, 1507
BbvI	GCAGC	4 cut(s)	567, 720, 2551, 2809
BcgI	CGANNNNNNTGC	2 cut(s)	2286, 2320
BciT130I	CCWGG	3 cut(s)	875, 963, 2834
BciVI	GTATCC	1 cut(s)	2372
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	5 cut(s)	419, 1312, 1374, 2109, 2170
BfmI	CTRYAG	2 cut(s)	931, 2565
BfoI	RGCGCY	1 cut(s)	2115
BfrI	CTTAAG	2 cut(s)	791, 1709
BfuAI	ACCTGC	1 cut(s)	1490
BfuI	GTATCC	1 cut(s)	2372
BglII	AGATCT	3 cut(s)	778, 1541, 2254
BisI	GCNGC	4 cut(s)	581, 734, 2565, 2798
BlnI	CCTAGG	1 cut(s)	1127
BlpI	GCTNAGC	2 cut(s)	495, 2227
BlsI	GCNGC	4 cut(s)	582, 735, 2566, 2799
Bme1390I	CCNGG	4 cut(s)	460, 875, 963, 2834
Bme18I	GGWCC	3 cut(s)	239, 686, 871
BmeRI	GACNNNNNGTC	1 cut(s)	2148
BmeT110I	CYCGRG	1 cut(s)	2498
BmgT120I	GGNCC	5 cut(s)	239, 686, 871, 1070, 2496
BmiI	GGNNCC	5 cut(s)	64, 166, 1071, 1656, 2655
BmrFI	CCNGG	4 cut(s)	460, 875, 963, 2834
BmrI	ACTGGG	2 cut(s)	1464, 1767
BmsI	GCATC	4 cut(s)	567, 2134, 2619, 2772
BmuI	ACTGGG	2 cut(s)	1464, 1767
BpiI	GAAGAC	2 cut(s)	281, 2147
BplI	GAGNNNNNCTC	2 cut(s)	2597, 2629
BpmI	CTGGAG	5 cut(s)	1392, 1398, 1587, 2316, 2855
Bpu1102I	GCTNAGC	2 cut(s)	495, 2227
Bpu14I	TTCGAA	1 cut(s)	1849
BpuEI	CTTGAG	2 cut(s)	822, 2091
BpuMI	CCSGG	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	2757
BsaBI	GATNNNNATC	2 cut(s)	1335, 2763
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	6 cut(s)	283, 962, 1073, 1127, 1891, 2499
BsaWI	WCCGGW	2 cut(s)	683, 1817
BsaXI	ACNNNNNCTCC	6 cut(s)	768, 798, 1383, 1413, 1560, 1590
Bse118I	RCCGGY	2 cut(s)	683, 2493
Bse3DI	GCAATG	2 cut(s)	560, 2638
Bse8I	GATNNNNATC	2 cut(s)	1335, 2763
BseBI	CCWGG	3 cut(s)	875, 963, 2834
BseCI	ATCGAT	1 cut(s)	2757
BseDI	CCNNGG	6 cut(s)	283, 962, 1073, 1127, 1891, 2499
BseGI	GGATG	8 cut(s)	21, 157, 582, 684, 1996, 2200, 2214, 2491
BseJI	GATNNNNATC	2 cut(s)	1335, 2763
BseMI	GCAATG	2 cut(s)	560, 2638
BseSI	GKGCMC	1 cut(s)	1507
BseXI	GCAGC	4 cut(s)	567, 720, 2551, 2809
BseYI	CCCAGC	1 cut(s)	2366
BsgI	GTGCAG	3 cut(s)	918, 975, 2204
Bsh1236I	CGCG	1 cut(s)	2295
BshFI	GGCC	8 cut(s)	139, 175, 405, 1072, 1890, 2497, 2668, 2700
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	683
BshVI	ATCGAT	1 cut(s)	2757
BsiHKAI	GWGCWC	2 cut(s)	979, 1507
BsiHKCI	CYCGRG	1 cut(s)	2498
BsiSI	CCGG	5 cut(s)	459, 684, 1818, 2494, 2634
BslFI	GGGAC	4 cut(s)	769, 1774, 2383, 2691
BsmAI	GTCTC	5 cut(s)	419, 1312, 1374, 2109, 2170
BsmBI	CGTCTC	1 cut(s)	1374
BsmFI	GGGAC	4 cut(s)	769, 1774, 2383, 2691
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	8 cut(s)	139, 175, 405, 1072, 1890, 2497, 2668, 2700
BsoBI	CYCGRG	1 cut(s)	2498
Bsp119I	TTCGAA	1 cut(s)	1849
Bsp1286I	GDGCHC	2 cut(s)	979, 1507
Bsp143I	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
Bsp1720I	GCTNAGC	2 cut(s)	495, 2227
Bsp19I	CCATGG	2 cut(s)	1073, 1891
BspACI	CCGC	5 cut(s)	443, 1097, 1427, 2293, 2868
BspANI	GGCC	8 cut(s)	139, 175, 405, 1072, 1890, 2497, 2668, 2700
BspDI	ATCGAT	1 cut(s)	2757
BspFNI	CGCG	1 cut(s)	2295
BspLI	GGNNCC	5 cut(s)	64, 166, 1071, 1656, 2655
BspMAI	CTGCAG	1 cut(s)	2569
BspMI	ACCTGC	1 cut(s)	1490
BspPI	GGATC	4 cut(s)	712, 953, 1688, 2567
BspT104I	TTCGAA	1 cut(s)	1849
BspT107I	GGYRCC	1 cut(s)	62
BspTI	CTTAAG	2 cut(s)	791, 1709
BsrDI	GCAATG	2 cut(s)	560, 2638
BsrFI	RCCGGY	2 cut(s)	683, 2493
BssAI	RCCGGY	2 cut(s)	683, 2493
BssECI	CCNNGG	6 cut(s)	283, 962, 1073, 1127, 1891, 2499
BssMI	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	4 cut(s)	283, 1073, 1127, 1891
Bst2UI	CCWGG	3 cut(s)	875, 963, 2834
Bst4CI	ACNGT	3 cut(s)	633, 1222, 1909
Bst6I	CTCTTC	3 cut(s)	100, 1347, 2778
BstACI	GRCGYC	1 cut(s)	713
BstAFI	CTTAAG	2 cut(s)	791, 1709
BstAPI	GCANNNNNTGC	2 cut(s)	2009, 2876
BstBI	TTCGAA	1 cut(s)	1849
BstC8I	GCNNGC	7 cut(s)	1136, 1197, 1485, 2123, 2233, 2364, 2802
BstDSI	CCRYGG	2 cut(s)	1073, 1891
BstEII	GGTNACC	3 cut(s)	812, 1820, 1855
BstF5I	GGATG	8 cut(s)	21, 157, 582, 684, 1996, 2200, 2214, 2491
BstFNI	CGCG	1 cut(s)	2295
BstH2I	RGCGCY	1 cut(s)	2115
BstHHI	GCGC	3 cut(s)	1134, 2114, 2297
BstKTI	GATC	9 cut(s)	707, 781, 961, 1015, 1544, 1696, 2257, 2575, 2629
BstMAI	GTCTC	5 cut(s)	419, 1312, 1374, 2109, 2170
BstMBI	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
BstMWI	GCNNNNNNNGC	9 cut(s)	1571, 1580, 2009, 2118, 2232, 2630, 2829, 2867, 2876
BstNI	CCWGG	3 cut(s)	875, 963, 2834
BstNSI	RCATGY	1 cut(s)	2684
BstPI	GGTNACC	3 cut(s)	812, 1820, 1855
BstSCI	CCNGG	4 cut(s)	458, 873, 961, 2832
BstSFI	CTRYAG	2 cut(s)	931, 2565
BstSLI	GKGCMC	1 cut(s)	1507
BstUI	CGCG	1 cut(s)	2295
BstV1I	GCAGC	4 cut(s)	567, 720, 2551, 2809
BstV2I	GAAGAC	2 cut(s)	281, 2147
BstX2I	RGATCY	3 cut(s)	778, 1541, 2254
BstXI	CCANNNNNNTGG	2 cut(s)	824, 2209
BstYI	RGATCY	3 cut(s)	778, 1541, 2254
Bsu15I	ATCGAT	1 cut(s)	2757
BsuI	GTATCC	1 cut(s)	2372
BsuRI	GGCC	8 cut(s)	139, 175, 405, 1072, 1890, 2497, 2668, 2700
BsuTUI	ATCGAT	1 cut(s)	2757
BtgI	CCRYGG	2 cut(s)	1073, 1891
BtsCI	GGATG	8 cut(s)	21, 157, 582, 684, 1996, 2200, 2214, 2491
BtsI	GCAGTG	5 cut(s)	17, 1792, 2406, 2643, 2691
BtsIMutI	CAGTG	8 cut(s)	17, 66, 1236, 1792, 2406, 2480, 2643, 2691
BveI	ACCTGC	1 cut(s)	1490
Cac8I	GCNNGC	7 cut(s)	1136, 1197, 1485, 2123, 2233, 2364, 2802
CfoI	GCGC	3 cut(s)	1134, 2114, 2297
Cfr10I	RCCGGY	2 cut(s)	683, 2493
Cfr13I	GGNCC	5 cut(s)	239, 686, 871, 1070, 2496
ClaI	ATCGAT	1 cut(s)	2757
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	6 cut(s)	902, 1146, 1218, 1633, 1935, 2059
CspAI	ACCGGT	1 cut(s)	683
CspCI	CAANNNNNGTGG	4 cut(s)	1195, 1230, 1768, 1803
CviAII	CATG	7 cut(s)	179, 424, 737, 1074, 1892, 2674, 2681
CviQI	GTAC	6 cut(s)	902, 1146, 1218, 1633, 1935, 2059
DpnI	GATC	9 cut(s)	706, 780, 960, 1014, 1543, 1695, 2256, 2574, 2628
DpnII	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
DriI	GACNNNNNGTC	1 cut(s)	2148
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	3 cut(s)	100, 1347, 2778
Eam1105I	GACNNNNNGTC	1 cut(s)	2148
EarI	CTCTTC	3 cut(s)	100, 1347, 2778
EciI	GGCGGA	1 cut(s)	1416
Eco130I	CCWWGG	4 cut(s)	283, 1073, 1127, 1891
Eco47I	GGWCC	3 cut(s)	239, 686, 871
Eco57I	CTGAAG	2 cut(s)	2174, 2613
Eco88I	CYCGRG	1 cut(s)	2498
Eco91I	GGTNACC	3 cut(s)	812, 1820, 1855
EcoO109I	RGGNCCY	1 cut(s)	239
EcoO65I	GGTNACC	3 cut(s)	812, 1820, 1855
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	3 cut(s)	873, 961, 2832
EcoT14I	CCWWGG	4 cut(s)	283, 1073, 1127, 1891
ErhI	CCWWGG	4 cut(s)	283, 1073, 1127, 1891
Esp3I	CGTCTC	1 cut(s)	1374
FaeI	CATG	7 cut(s)	182, 427, 740, 1077, 1895, 2677, 2684
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 2100, 2132
FaqI	GGGAC	4 cut(s)	769, 1774, 2383, 2691
FatI	CATG	7 cut(s)	178, 423, 736, 1073, 1891, 2673, 2680
FauI	CCCGC	1 cut(s)	2875
FauNDI	CATATG	1 cut(s)	1806
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	4 cut(s)	581, 734, 2565, 2798
FokI	GGATG	8 cut(s)	28, 164, 589, 691, 2003, 2207, 2221, 2498
Fsp4HI	GCNGC	4 cut(s)	581, 734, 2565, 2798
GlaI	GCGC	3 cut(s)	1133, 2113, 2296
GluI	GCNGC	4 cut(s)	581, 734, 2565, 2798
GsaI	CCCAGC	1 cut(s)	2370
GsuI	CTGGAG	5 cut(s)	1392, 1398, 1587, 2316, 2855
HaeII	RGCGCY	1 cut(s)	2115
HaeIII	GGCC	8 cut(s)	139, 175, 405, 1072, 1890, 2497, 2668, 2700
HapII	CCGG	5 cut(s)	459, 684, 1818, 2494, 2634
HgaI	GACGC	1 cut(s)	441
HhaI	GCGC	3 cut(s)	1134, 2114, 2297
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	7 cut(s)	182, 427, 740, 1077, 1895, 2677, 2684
Hin6I	GCGC	3 cut(s)	1132, 2112, 2295
HinP1I	GCGC	3 cut(s)	1132, 2112, 2295
HindIII	AAGCTT	3 cut(s)	1706, 1741, 2555
HpaII	CCGG	5 cut(s)	459, 684, 1818, 2494, 2634
HphI	GGTGA	7 cut(s)	1022, 1318, 1449, 1667, 1867, 1931, 2294
Hpy166II	GTNNAC	7 cut(s)	456, 1475, 1505, 1675, 1912, 1922, 2689
Hpy188III	TCNNGA	9 cut(s)	122, 359, 574, 665, 998, 1307, 1697, 2333, 2751
Hpy8I	GTNNAC	7 cut(s)	456, 1475, 1505, 1675, 1912, 1922, 2689
HpyAV	CCTTC	5 cut(s)	1167, 1488, 2063, 2251, 2896
HpyCH4III	ACNGT	3 cut(s)	633, 1222, 1909
HpyCH4IV	ACGT	3 cut(s)	323, 713, 2691
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1571, 1580, 2009, 2118, 2232, 2630, 2829, 2867, 2876
HpySE526I	ACGT	3 cut(s)	323, 713, 2691
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	7 cut(s)	182, 427, 740, 1077, 1895, 2677, 2684
HspAI	GCGC	3 cut(s)	1132, 2112, 2295
Kzo9I	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
LmnI	GCTCC	8 cut(s)	170, 982, 1417, 1538, 1660, 2335, 2458, 2653
Lsp1109I	GCAGC	4 cut(s)	567, 720, 2551, 2809
LweI	GCATC	4 cut(s)	567, 2134, 2619, 2772
MaeII	ACGT	3 cut(s)	323, 713, 2691
MalI	GATC	9 cut(s)	706, 780, 960, 1014, 1543, 1695, 2256, 2574, 2628
MboI	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	3 cut(s)	778, 1541, 2254
MhlI	GDGCHC	2 cut(s)	979, 1507
MlsI	TGGCCA	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	139
MlyI	GAGTC	3 cut(s)	1162, 1314, 2158
MmeI	TCCRAC	4 cut(s)	93, 514, 1426, 2600
Mox20I	TGGCCA	1 cut(s)	139
MroXI	GAANNNNTTC	3 cut(s)	98, 302, 2082
MscI	TGGCCA	1 cut(s)	139
MslI	CAYNNNNRTG	1 cut(s)	1494
Msp20I	TGGCCA	1 cut(s)	139
MspA1I	CMGCKG	1 cut(s)	445
MspCI	CTTAAG	2 cut(s)	791, 1709
MspI	CCGG	5 cut(s)	459, 684, 1818, 2494, 2634
MspR9I	CCNGG	4 cut(s)	460, 875, 963, 2834
MunI	CAATTG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	3 cut(s)	875, 963, 2834
MvnI	CGCG	1 cut(s)	2295
MwoI	GCNNNNNNNGC	9 cut(s)	1571, 1580, 2009, 2118, 2232, 2630, 2829, 2867, 2876
NciI	CCSGG	1 cut(s)	460
NcoI	CCATGG	2 cut(s)	1073, 1891
NdeI	CATATG	1 cut(s)	1806
NdeII	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
NlaIII	CATG	7 cut(s)	182, 427, 740, 1077, 1895, 2677, 2684
NlaIV	GGNNCC	5 cut(s)	64, 166, 1071, 1656, 2655
NmuCI	GTSAC	3 cut(s)	1307, 1855, 2464
NspI	RCATGY	1 cut(s)	2684
NspV	TTCGAA	1 cut(s)	1849
PaqCI	CACCTGC	1 cut(s)	1490
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	3 cut(s)	98, 302, 2082
PflMI	CCANNNNNTGG	2 cut(s)	146, 892
PinAI	ACCGGT	1 cut(s)	683
PkrI	GCNGC	4 cut(s)	582, 735, 2566, 2799
PleI	GAGTC	3 cut(s)	1161, 1314, 2157
PpsI	GAGTC	3 cut(s)	1161, 1314, 2157
PpuMI	RGGWCCY	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	2474
PsiI	TTATAA	2 cut(s)	2183, 2763
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	3 cut(s)	873, 961, 2832
PspEI	GGTNACC	3 cut(s)	812, 1820, 1855
PspFI	CCCAGC	1 cut(s)	2366
PspGI	CCWGG	3 cut(s)	873, 961, 2832
PspN4I	GGNNCC	5 cut(s)	64, 166, 1071, 1656, 2655
PspPI	GGNCC	5 cut(s)	239, 686, 871, 1070, 2496
PspPPI	RGGWCCY	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	2569
PsuI	RGATCY	3 cut(s)	778, 1541, 2254
RsaI	GTAC	6 cut(s)	903, 1147, 1219, 1634, 1936, 2060
RsaNI	GTAC	6 cut(s)	902, 1146, 1218, 1633, 1935, 2059
RseI	CAYNNNNRTG	1 cut(s)	1494
SatI	GCNGC	4 cut(s)	581, 734, 2565, 2798
Sau3AI	GATC	9 cut(s)	704, 778, 958, 1012, 1541, 1693, 2254, 2572, 2626
Sau96I	GGNCC	5 cut(s)	239, 686, 871, 1070, 2496
SchI	GAGTC	3 cut(s)	1162, 1314, 2158
ScrFI	CCNGG	4 cut(s)	460, 875, 963, 2834
SduI	GDGCHC	2 cut(s)	979, 1507
SfaNI	GCATC	4 cut(s)	567, 2134, 2619, 2772
SfcI	CTRYAG	2 cut(s)	931, 2565
SfuI	TTCGAA	1 cut(s)	1849
SinI	GGWCC	3 cut(s)	239, 686, 871
SmiMI	CAYNNNNRTG	1 cut(s)	1494
SmlI	CTYRAG	4 cut(s)	791, 837, 1709, 2106
SmoI	CTYRAG	4 cut(s)	791, 837, 1709, 2106
SsiI	CCGC	5 cut(s)	443, 1097, 1427, 2293, 2868
SspI	AATATT	2 cut(s)	1282, 2272
StyD4I	CCNGG	4 cut(s)	458, 873, 961, 2832
StyI	CCWWGG	4 cut(s)	283, 1073, 1127, 1891
TaaI	ACNGT	3 cut(s)	633, 1222, 1909
TaiI	ACGT	3 cut(s)	326, 716, 2694
TaqI	TCGA	5 cut(s)	861, 1849, 2035, 2757, 2905
TatI	WGTACW	1 cut(s)	1632
TscAI	CASTG	8 cut(s)	17, 73, 1243, 1792, 2406, 2487, 2650, 2691
TseFI	GTSAC	3 cut(s)	1307, 1855, 2464
TseI	GCWGC	4 cut(s)	580, 733, 2564, 2797
Tsp45I	GTSAC	3 cut(s)	1307, 1855, 2464
TspDTI	ATGAA	5 cut(s)	98, 933, 2007, 2233, 2748
TspGWI	ACGGA	3 cut(s)	1752, 2018, 2053
TspRI	CASTG	8 cut(s)	17, 73, 1243, 1792, 2406, 2487, 2650, 2691
Van91I	CCANNNNNTGG	2 cut(s)	146, 892
Vha464I	CTTAAG	2 cut(s)	791, 1709
VneI	GTGCAC	1 cut(s)	1503
VpaK11BI	GGWCC	3 cut(s)	239, 686, 871
VspI	ATTAAT	1 cut(s)	2474
XapI	RAATTY	5 cut(s)	548, 746, 1168, 1301, 1994
XceI	RCATGY	1 cut(s)	2684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1898
XmaJI	CCTAGG	1 cut(s)	1127
XmiI	GTMKAC	1 cut(s)	455
XmnI	GAANNNNTTC	3 cut(s)	98, 302, 2082
ZraI	GACGTC	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.