Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001408.1

Orthogroup ID

OG0003268

Physical Location & Seq

Genomic Coordinates Forward (+)

81137 .. 84659

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001408.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

atggataggaagtggatggtaggcaatttcctgtttttgtggctattggctgtggtttatggtgccactaaccctgatgatatgaagattctgaatgatttgagaaaagggttggagaatccagagcttcttaaatggccagaaaatggggatgacccttgtggctccaaatggcctcatgtgttttgtagtggggatagagttacacagattcaagttcagggtgtggggcttaaaggacctctgcctcagaactttaatcagctctcaaagctctacaaccttggtcttcaaaagaacaacttcaatggcaagttacccacgtttagtggcttatctgaactgcaatatgcttatttggataacaatgattttgatactatcccgtccgatttcttcaatggccttaccagtctctcagtcatggctttggataacattccgctgaatgcgtctaccgggtggtctattcctagtgagttagaaaactcagctcagctacaaaatctttccttgattgagtgtaacttggttggacaactgcctgaattcttaggcacattgccgaatctcaggatgctgcaactttcgtttaacagattaactggtggtttgcccaagagttttggacagtctttgttgcagattttgtggttgaataatcaagatggtggtgggatgactggtccaattgatgttattggatcaatgacgtctttgacacaggtttggatgcatggaaacaaattcacagggacaataccagagaacattggagatcttgtatctcttaaggaactcaacctcaatggtaaccaacttgttggtcagattcctcaagcattggctgacttgaagctcgacaaattggacctggcaaacaaccagttaatgggtgcagtacccaagtttcagtctggtaatgtttcctatagttctaattcattttgtcaaactgatcctgggcttctatgtgctccacaagttaccgcacttctggattttcttggtgatctgagttacccatctagtctgacctctgactggtctggtaatgacccctgtggggggccatggttgggagttagttgcaatccgcagtcgaaagtttctgtcatcaatttgcctaggcgcaagctaaatggtactctgagtccttcacttgtgaatttagattctctgattgatattaggcttgctggaaacaatataagaggtacagttcctactaacctcactgagttgaaatccttgacgacattggatataagtggaaacaatattgagcctccattaccaaaatttcgtgacaatgtgaggctcatcaccgatggaaatcctcttctagttgctaataaaacagccccgtctcctttacctaccagaagcccaccccaacccccactccaacctccagctccagcagacaatcccccaccaggtaccacaaaaccacctcaatcaccaatttcccctagtccaccttcgccaactcactcaaatgcaggtgcacctaagtcggaatctcaactcaaaagctctaaaagatctaaaccagttattgttgtggctgcagttgcagttatagctgtatctgtgattcttctgttgatgtgtctatctatatactggtgtaagtacagaagaaacaacttggaggctccttgttccattgtggttcaccctaaagacccatctgatccagaaaacaagcttaagattgcagtttctagcaatacaaacggaagcttatcaactagaactgggactacttatttgagtaacaacagcagtggaacacaaagttctcagatgattgattctggtaaccttgtcatatctgttcaagttcttcgaaaggtgaccaataactttgcacctgaaaacgagctaggccatggtggatttggaactgtttacaagggtgaactagaagatggtacaaatctggctgttaagagaatggagggtggtgtaatcagtagtaaaggattggatgaatttcaggcagaaattgctgtactttccaaagtccgtcatcgacatttggtttctctgttggggtactccgttgaagggagtgaaaggcttcttgtctatgagtatatgtctcaaggcgctcttagcaggcatcttttccattggaagaccctgagtctgaagcctttgtcttggacaaggagacttataattgcattggatgttgccagagggatggagtatctgcacagcttagctcgccagaccttcattcacagagatctcaaatcttctaatattcttttgggtgatgacttccgcgcaaaagtttcggattttggattggttaaacttgctccagatggggagaaatctgttgcgactaggcttgctgggacatttggataccttgcccctgaatatgcagaaacttttgagagcatctccttaatagctgatcttgctggacattgcactgcgagggagccaacacatcggcctgacatgggacatgcagtgaacgtgctaggccaacttgttgaaaagtggaaaccagttgatgaaggatcagaaagtttctctggaatcgattataatcaacctctttcccagatgctaaaagtttggcagcaagcagaaagcagagaggtcagctatactagcctggaggacagcaagggaagtattcctgctagacccgctggatttgcagattccttcacttctgccgatggtcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

906

Amino Acids

98.41

Weight (kDa)

6.21

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26630 FvH4_3g26630 FvH4_6g20300
malus_domestica	MD03G1154600.v1.1 MD12G1040200.v1.1 MD14G1038700.v1.1
prunus_persica	Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.7G094700_v2.0.a1
pyrus_communis	pycom03g10840 pycom12g03440 pycom14g03340
rosa_chinensis	RchiOBHm_Chr3g0475921 RchiOBHm_Chr5g0048201
rosa_laevigata	RLG00000023801 RLG00000034502
rosa_multiflora	Rmu_sc0001408.1_g000015 Rmu_sc0009168.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033720 Rroxscaffold_6G00405730
rosa_rugosa	Rorug03G0151900 Rorug05G0237000 Rorug05G0237100
rosa_samantha	Rh3AG202700 Rh3BG232600 Rh3CG228000 Rh3DG228200 Rh5AG316200 Rh5BG326800 Rh5CG353000 Rh5DG337800
rosa_wichuraiana	Rw3G018440 Rw5G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2189, 2574
AarI	CACCTGC	1 cut(s)	1496
AatII	GACGTC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	1496
Acc65I	GGTACC	1 cut(s)	1442
AccB1I	GGYRCC	2 cut(s)	62, 1442
AccB7I	CCANNNNNTGG	2 cut(s)	146, 892
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	1 cut(s)	2301
AciI	CCGC	5 cut(s)	443, 990, 1097, 2299, 2679
AclWI	GGATC	4 cut(s)	712, 953, 1694, 2554
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	5 cut(s)	548, 746, 1168, 1301, 2000
AcuI	CTGAAG	1 cut(s)	2180
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	8 cut(s)	903, 1147, 1219, 1444, 1640, 1942, 2022, 2066
AflII	CTTAAG	2 cut(s)	791, 1715
AhdI	GACNNNNNGTC	1 cut(s)	2154
AjnI	CCWGG	4 cut(s)	873, 961, 1438, 2643
Alw21I	GWGCWC	2 cut(s)	979, 1513
Alw26I	GTCTC	4 cut(s)	419, 1374, 2115, 2176
Alw44I	GTGCAC	1 cut(s)	1509
AlwI	GGATC	4 cut(s)	712, 953, 1694, 2554
AoxI	GGCC	7 cut(s)	137, 173, 403, 1070, 1894, 2477, 2509
ApaLI	GTGCAC	1 cut(s)	1509
ApeKI	GCWGC	3 cut(s)	580, 1571, 2608
ApoI	RAATTY	5 cut(s)	548, 746, 1168, 1301, 2000
ArsI	GACNNNNNNTTYG	2 cut(s)	1759, 1791
Asp700I	GAANNNNTTC	2 cut(s)	302, 2088
Asp718I	GGTACC	1 cut(s)	1442
AspA2I	CCTAGG	1 cut(s)	1127
AspLEI	GCGC	3 cut(s)	1134, 2120, 2303
AspS9I	GGNCC	4 cut(s)	239, 686, 871, 1070
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	7 cut(s)	1022, 1318, 1455, 1673, 1873, 1937, 2300
AsuII	TTCGAA	1 cut(s)	1855
AvaII	GGWCC	3 cut(s)	239, 686, 871
AvrII	CCTAGG	1 cut(s)	1127
BaeGI	GKGCMC	1 cut(s)	1513
BalI	TGGCCA	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	62, 1442
BbsI	GAAGAC	2 cut(s)	281, 2153
Bbv12I	GWGCWC	2 cut(s)	979, 1513
BbvI	GCAGC	3 cut(s)	567, 1558, 2620
BccI	CCATC	9 cut(s)	10, 662, 1033, 1325, 1702, 1931, 2209, 2336, 2705
BcgI	CGANNNNNNTGC	4 cut(s)	1500, 1534, 2292, 2326
BciT130I	CCWGG	4 cut(s)	875, 963, 1440, 2645
BciVI	GTATCC	1 cut(s)	2378
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	4 cut(s)	419, 1374, 2115, 2176
BfmI	CTRYAG	2 cut(s)	931, 1572
BfoI	RGCGCY	1 cut(s)	2121
BfrI	CTTAAG	2 cut(s)	791, 1715
BfuAI	ACCTGC	1 cut(s)	1496
BfuI	GTATCC	1 cut(s)	2378
BglII	AGATCT	3 cut(s)	778, 1547, 2260
BisI	GCNGC	3 cut(s)	581, 1572, 2609
BlnI	CCTAGG	1 cut(s)	1127
BlpI	GCTNAGC	2 cut(s)	495, 2233
BlsI	GCNGC	3 cut(s)	582, 1573, 2610
Bme1390I	CCNGG	5 cut(s)	460, 875, 963, 1440, 2645
Bme18I	GGWCC	3 cut(s)	239, 686, 871
BmeRI	GACNNNNNGTC	1 cut(s)	2154
BmgT120I	GGNCC	4 cut(s)	239, 686, 871, 1070
BmiI	GGNNCC	6 cut(s)	64, 166, 1071, 1444, 1662, 2466
BmrFI	CCNGG	5 cut(s)	460, 875, 963, 1440, 2645
BmrI	ACTGGG	1 cut(s)	1773
BmsI	GCATC	5 cut(s)	567, 723, 2140, 2430, 2583
BmuI	ACTGGG	1 cut(s)	1773
BpiI	GAAGAC	2 cut(s)	281, 2153
BplI	GAGNNNNNCTC	2 cut(s)	2408, 2440
BpmI	CTGGAG	4 cut(s)	1398, 1404, 2322, 2666
Bpu1102I	GCTNAGC	2 cut(s)	495, 2233
Bpu14I	TTCGAA	1 cut(s)	1855
BpuEI	CTTGAG	2 cut(s)	822, 2097
BpuMI	CCSGG	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	2568
BsaBI	GATNNNNATC	2 cut(s)	1335, 2574
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	5 cut(s)	283, 962, 1073, 1127, 1897
BsaXI	ACNNNNNCTCC	4 cut(s)	768, 798, 1389, 1419
Bse1I	ACTGG	9 cut(s)	411, 610, 688, 886, 1049, 1556, 1634, 1768, 2534
Bse3DI	GCAATG	2 cut(s)	560, 2449
Bse8I	GATNNNNATC	2 cut(s)	1335, 2574
BseBI	CCWGG	4 cut(s)	875, 963, 1440, 2645
BseCI	ATCGAT	1 cut(s)	2568
BseDI	CCNNGG	5 cut(s)	283, 962, 1073, 1127, 1897
BseGI	GGATG	8 cut(s)	21, 157, 582, 684, 738, 2002, 2206, 2220
BseJI	GATNNNNATC	2 cut(s)	1335, 2574
BseMI	GCAATG	2 cut(s)	560, 2449
BseNI	ACTGG	9 cut(s)	411, 610, 688, 886, 1049, 1556, 1634, 1768, 2534
BseSI	GKGCMC	1 cut(s)	1513
BseXI	GCAGC	3 cut(s)	567, 1558, 2620
BseYI	CCCAGC	1 cut(s)	2372
BsgI	GTGCAG	2 cut(s)	918, 2210
Bsh1236I	CGCG	1 cut(s)	2301
BshFI	GGCC	7 cut(s)	139, 175, 405, 1072, 1896, 2479, 2511
BshNI	GGYRCC	2 cut(s)	62, 1442
BshVI	ATCGAT	1 cut(s)	2568
BsiHKAI	GWGCWC	2 cut(s)	979, 1513
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	4 cut(s)	769, 1780, 2389, 2502
BsmAI	GTCTC	4 cut(s)	419, 1374, 2115, 2176
BsmBI	CGTCTC	1 cut(s)	1374
BsmFI	GGGAC	4 cut(s)	769, 1780, 2389, 2502
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	7 cut(s)	139, 175, 405, 1072, 1896, 2479, 2511
Bsp119I	TTCGAA	1 cut(s)	1855
Bsp1286I	GDGCHC	2 cut(s)	979, 1513
Bsp143I	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
Bsp1720I	GCTNAGC	2 cut(s)	495, 2233
Bsp19I	CCATGG	2 cut(s)	1073, 1897
BspACI	CCGC	5 cut(s)	443, 990, 1097, 2299, 2679
BspANI	GGCC	7 cut(s)	139, 175, 405, 1072, 1896, 2479, 2511
BspDI	ATCGAT	1 cut(s)	2568
BspFNI	CGCG	1 cut(s)	2301
BspLI	GGNNCC	6 cut(s)	64, 166, 1071, 1444, 1662, 2466
BspMAI	CTGCAG	1 cut(s)	1576
BspMI	ACCTGC	1 cut(s)	1496
BspPI	GGATC	4 cut(s)	712, 953, 1694, 2554
BspT104I	TTCGAA	1 cut(s)	1855
BspT107I	GGYRCC	2 cut(s)	62, 1442
BspTI	CTTAAG	2 cut(s)	791, 1715
BsrDI	GCAATG	2 cut(s)	560, 2449
BsrI	ACTGG	9 cut(s)	411, 610, 688, 886, 1049, 1556, 1634, 1768, 2534
BssECI	CCNNGG	5 cut(s)	283, 962, 1073, 1127, 1897
BssMI	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	4 cut(s)	283, 1073, 1127, 1897
Bst2UI	CCWGG	4 cut(s)	875, 963, 1440, 2645
Bst4CI	ACNGT	3 cut(s)	633, 1222, 1915
Bst6I	CTCTTC	1 cut(s)	1347
BstACI	GRCGYC	1 cut(s)	713
BstAFI	CTTAAG	2 cut(s)	791, 1715
BstAPI	GCANNNNNTGC	1 cut(s)	2015
BstBI	TTCGAA	1 cut(s)	1855
BstC8I	GCNNGC	6 cut(s)	1136, 1197, 2129, 2239, 2370, 2613
BstDSI	CCRYGG	2 cut(s)	1073, 1897
BstEII	GGTNACC	3 cut(s)	812, 1826, 1861
BstF5I	GGATG	8 cut(s)	21, 157, 582, 684, 738, 2002, 2206, 2220
BstFNI	CGCG	1 cut(s)	2301
BstH2I	RGCGCY	1 cut(s)	2121
BstHHI	GCGC	3 cut(s)	1134, 2120, 2303
BstKTI	GATC	9 cut(s)	707, 781, 961, 1015, 1550, 1702, 2263, 2440, 2549
BstMAI	GTCTC	4 cut(s)	419, 1374, 2115, 2176
BstMBI	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
BstNI	CCWGG	4 cut(s)	875, 963, 1440, 2645
BstNSI	RCATGY	1 cut(s)	2495
BstPI	GGTNACC	3 cut(s)	812, 1826, 1861
BstSCI	CCNGG	5 cut(s)	458, 873, 961, 1438, 2643
BstSFI	CTRYAG	2 cut(s)	931, 1572
BstSLI	GKGCMC	1 cut(s)	1513
BstUI	CGCG	1 cut(s)	2301
BstV1I	GCAGC	3 cut(s)	567, 1558, 2620
BstV2I	GAAGAC	2 cut(s)	281, 2153
BstX2I	RGATCY	3 cut(s)	778, 1547, 2260
BstXI	CCANNNNNNTGG	2 cut(s)	824, 2215
BstYI	RGATCY	3 cut(s)	778, 1547, 2260
Bsu15I	ATCGAT	1 cut(s)	2568
BsuI	GTATCC	1 cut(s)	2378
BsuRI	GGCC	7 cut(s)	139, 175, 405, 1072, 1896, 2479, 2511
BsuTUI	ATCGAT	1 cut(s)	2568
BtgI	CCRYGG	2 cut(s)	1073, 1897
BtsCI	GGATG	8 cut(s)	21, 157, 582, 684, 738, 2002, 2206, 2220
BtsI	GCAGTG	3 cut(s)	1798, 2454, 2502
BtsIMutI	CAGTG	4 cut(s)	1236, 1798, 2454, 2502
BveI	ACCTGC	1 cut(s)	1496
Cac8I	GCNNGC	6 cut(s)	1136, 1197, 2129, 2239, 2370, 2613
CfoI	GCGC	3 cut(s)	1134, 2120, 2303
Cfr13I	GGNCC	4 cut(s)	239, 686, 871, 1070
ClaI	ATCGAT	1 cut(s)	2568
CseI	GACGC	1 cut(s)	441
CsiI	ACCWGGT	1 cut(s)	1438
Csp6I	GTAC	8 cut(s)	902, 1146, 1218, 1443, 1639, 1941, 2021, 2065
CspCI	CAANNNNNGTGG	2 cut(s)	1774, 1809
CviAII	CATG	7 cut(s)	179, 424, 737, 1074, 1898, 2485, 2492
CviQI	GTAC	8 cut(s)	902, 1146, 1218, 1443, 1639, 1941, 2021, 2065
DpnI	GATC	9 cut(s)	706, 780, 960, 1014, 1549, 1701, 2262, 2439, 2548
DpnII	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
DriI	GACNNNNNGTC	1 cut(s)	2154
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	1347
Eam1105I	GACNNNNNGTC	1 cut(s)	2154
EarI	CTCTTC	1 cut(s)	1347
Eco130I	CCWWGG	4 cut(s)	283, 1073, 1127, 1897
Eco47I	GGWCC	3 cut(s)	239, 686, 871
Eco57I	CTGAAG	1 cut(s)	2180
Eco91I	GGTNACC	3 cut(s)	812, 1826, 1861
EcoO109I	RGGNCCY	1 cut(s)	239
EcoO65I	GGTNACC	3 cut(s)	812, 1826, 1861
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	4 cut(s)	873, 961, 1438, 2643
EcoT14I	CCWWGG	4 cut(s)	283, 1073, 1127, 1897
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	4 cut(s)	283, 1073, 1127, 1897
Esp3I	CGTCTC	1 cut(s)	1374
FaeI	CATG	7 cut(s)	182, 427, 740, 1077, 1901, 2488, 2495
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 2106, 2138
FaqI	GGGAC	4 cut(s)	769, 1780, 2389, 2502
FatI	CATG	7 cut(s)	178, 423, 736, 1073, 1897, 2484, 2491
FauI	CCCGC	1 cut(s)	2686
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	3 cut(s)	581, 1572, 2609
FokI	GGATG	8 cut(s)	28, 164, 589, 691, 745, 2009, 2213, 2227
Fsp4HI	GCNGC	3 cut(s)	581, 1572, 2609
GlaI	GCGC	3 cut(s)	1133, 2119, 2302
GluI	GCNGC	3 cut(s)	581, 1572, 2609
GsaI	CCCAGC	1 cut(s)	2376
GsuI	CTGGAG	4 cut(s)	1398, 1404, 2322, 2666
HaeII	RGCGCY	1 cut(s)	2121
HaeIII	GGCC	7 cut(s)	139, 175, 405, 1072, 1896, 2479, 2511
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	1 cut(s)	441
HhaI	GCGC	3 cut(s)	1134, 2120, 2303
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	7 cut(s)	182, 427, 740, 1077, 1901, 2488, 2495
Hin6I	GCGC	3 cut(s)	1132, 2118, 2301
HinP1I	GCGC	3 cut(s)	1132, 2118, 2301
HindIII	AAGCTT	2 cut(s)	1712, 1747
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	7 cut(s)	1022, 1318, 1455, 1673, 1873, 1937, 2300
Hpy166II	GTNNAC	7 cut(s)	456, 1481, 1511, 1681, 1918, 1928, 2500
Hpy188III	TCNNGA	8 cut(s)	122, 574, 665, 998, 1307, 1703, 2339, 2562
Hpy8I	GTNNAC	7 cut(s)	456, 1481, 1511, 1681, 1918, 1928, 2500
HpyAV	CCTTC	6 cut(s)	1167, 1494, 2069, 2257, 2537, 2707
HpyCH4III	ACNGT	3 cut(s)	633, 1222, 1915
HpyCH4IV	ACGT	3 cut(s)	323, 713, 2502
HpySE526I	ACGT	3 cut(s)	323, 713, 2502
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	7 cut(s)	182, 427, 740, 1077, 1901, 2488, 2495
HspAI	GCGC	3 cut(s)	1132, 2118, 2301
KpnI	GGTACC	1 cut(s)	1446
Kzo9I	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
LmnI	GCTCC	6 cut(s)	170, 982, 1423, 1666, 2341, 2464
Lsp1109I	GCAGC	3 cut(s)	567, 1558, 2620
LweI	GCATC	5 cut(s)	567, 723, 2140, 2430, 2583
MabI	ACCWGGT	1 cut(s)	1438
MaeII	ACGT	3 cut(s)	323, 713, 2502
MalI	GATC	9 cut(s)	706, 780, 960, 1014, 1549, 1701, 2262, 2439, 2548
MboI	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	3 cut(s)	778, 1547, 2260
MhlI	GDGCHC	2 cut(s)	979, 1513
MlsI	TGGCCA	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	1162, 2164
MmeI	TCCRAC	4 cut(s)	93, 514, 1432, 1500
Mox20I	TGGCCA	1 cut(s)	139
Mph1103I	ATGCAT	1 cut(s)	738
MroXI	GAANNNNTTC	2 cut(s)	302, 2088
MscI	TGGCCA	1 cut(s)	139
MslI	CAYNNNNRTG	1 cut(s)	1500
Msp20I	TGGCCA	1 cut(s)	139
MspA1I	CMGCKG	2 cut(s)	445, 2681
MspCI	CTTAAG	2 cut(s)	791, 1715
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	5 cut(s)	460, 875, 963, 1440, 2645
MunI	CAATTG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	4 cut(s)	875, 963, 1440, 2645
MvnI	CGCG	1 cut(s)	2301
NciI	CCSGG	1 cut(s)	460
NcoI	CCATGG	2 cut(s)	1073, 1897
NdeII	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
NlaIII	CATG	7 cut(s)	182, 427, 740, 1077, 1901, 2488, 2495
NlaIV	GGNNCC	6 cut(s)	64, 166, 1071, 1444, 1662, 2466
NmuCI	GTSAC	2 cut(s)	1307, 1861
NsiI	ATGCAT	1 cut(s)	738
NspI	RCATGY	1 cut(s)	2495
NspV	TTCGAA	1 cut(s)	1855
PaqCI	CACCTGC	1 cut(s)	1496
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	302, 2088
PflMI	CCANNNNNTGG	2 cut(s)	146, 892
PkrI	GCNGC	3 cut(s)	582, 1573, 2610
PleI	GAGTC	2 cut(s)	1161, 2163
PpsI	GAGTC	2 cut(s)	1161, 2163
PpuMI	RGGWCCY	1 cut(s)	239
PsiI	TTATAA	2 cut(s)	2189, 2574
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	4 cut(s)	873, 961, 1438, 2643
PspEI	GGTNACC	3 cut(s)	812, 1826, 1861
PspFI	CCCAGC	1 cut(s)	2372
PspGI	CCWGG	4 cut(s)	873, 961, 1438, 2643
PspN4I	GGNNCC	6 cut(s)	64, 166, 1071, 1444, 1662, 2466
PspPI	GGNCC	4 cut(s)	239, 686, 871, 1070
PspPPI	RGGWCCY	1 cut(s)	239
PsrI	GAACNNNNNNTAC	2 cut(s)	1753, 1785
PstI	CTGCAG	1 cut(s)	1576
PsuI	RGATCY	3 cut(s)	778, 1547, 2260
RsaI	GTAC	8 cut(s)	903, 1147, 1219, 1444, 1640, 1942, 2022, 2066
RsaNI	GTAC	8 cut(s)	902, 1146, 1218, 1443, 1639, 1941, 2021, 2065
RseI	CAYNNNNRTG	1 cut(s)	1500
SatI	GCNGC	3 cut(s)	581, 1572, 2609
Sau3AI	GATC	9 cut(s)	704, 778, 958, 1012, 1547, 1699, 2260, 2437, 2546
Sau96I	GGNCC	4 cut(s)	239, 686, 871, 1070
SchI	GAGTC	2 cut(s)	1162, 2164
ScrFI	CCNGG	5 cut(s)	460, 875, 963, 1440, 2645
SduI	GDGCHC	2 cut(s)	979, 1513
SexAI	ACCWGGT	1 cut(s)	1438
SfaNI	GCATC	5 cut(s)	567, 723, 2140, 2430, 2583
SfcI	CTRYAG	2 cut(s)	931, 1572
SfuI	TTCGAA	1 cut(s)	1855
SinI	GGWCC	3 cut(s)	239, 686, 871
SmiMI	CAYNNNNRTG	1 cut(s)	1500
SmlI	CTYRAG	4 cut(s)	791, 837, 1715, 2112
SmoI	CTYRAG	4 cut(s)	791, 837, 1715, 2112
SsiI	CCGC	5 cut(s)	443, 990, 1097, 2299, 2679
SspI	AATATT	2 cut(s)	1282, 2278
StyD4I	CCNGG	5 cut(s)	458, 873, 961, 1438, 2643
StyI	CCWWGG	4 cut(s)	283, 1073, 1127, 1897
TaaI	ACNGT	3 cut(s)	633, 1222, 1915
TaiI	ACGT	3 cut(s)	326, 716, 2505
TaqI	TCGA	6 cut(s)	861, 1103, 1855, 2041, 2568, 2716
TatI	WGTACW	2 cut(s)	1638, 2020
TscAI	CASTG	4 cut(s)	1243, 1798, 2461, 2502
TseFI	GTSAC	2 cut(s)	1307, 1861
TseI	GCWGC	3 cut(s)	580, 1571, 2608
Tsp45I	GTSAC	2 cut(s)	1307, 1861
TspDTI	ATGAA	5 cut(s)	98, 933, 2013, 2239, 2556
TspGWI	ACGGA	3 cut(s)	1758, 2024, 2059
TspRI	CASTG	4 cut(s)	1243, 1798, 2461, 2502
Van91I	CCANNNNNTGG	2 cut(s)	146, 892
Vha464I	CTTAAG	2 cut(s)	791, 1715
VneI	GTGCAC	1 cut(s)	1509
VpaK11BI	GGWCC	3 cut(s)	239, 686, 871
XapI	RAATTY	5 cut(s)	548, 746, 1168, 1301, 2000
XceI	RCATGY	1 cut(s)	2495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1904
XmaJI	CCTAGG	1 cut(s)	1127
XmiI	GTMKAC	1 cut(s)	455
XmnI	GAANNNNTTC	2 cut(s)	302, 2088
ZraI	GACGTC	1 cut(s)	714
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.