Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003268

Physical Location & Seq

Genomic Coordinates Reverse (-)

43817732 .. 43826380

Gene Structure 8649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3441 bp

ATGGTAGGCAATTTCCTGTTTTTGTGGCTATTGGCTGTGGTTTATGGTGCCACTGACCCTGATGATATGAAGATTCTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTCTTAAATGGCCAGCAAATGGGGATGACCCTTGTGGCTCTAAATGGCCTCATGTGTTTTGTAGTGGGGATAGAGTTACACAGATTCAAGTTCAGGGTGTGGGGCTTAAAGGACCTCTGCCTCAGAACTTTAATCAGCTCTCAAAGCTCTACAACCTTGGTCTTCAAAAGAACCACTTCAATGGCAAGTTACCCACGTTTAGTGGCTTATCTGAACTGCAATATGCTTATCTGGATAACAATGATTTTGATACTATCCCGTCCGATTTCTTCAATGGCCTTACCAGTCTCTCAGTCATGGCTTTGGATAACATTCCGCTGAATGCGTCTACCGGGTGGTCTATTCCTAATGAGTTAGAAAACTCAGCTCAGCTACAAAATCTTTCCTTGATTGACTGTAACTTGGTTGGACAACTTCCTGCATTCTTAGGCACATTGCCGAATCTCAGGATGCTGCAACTTTCGTTTAACAGATTAACTGGTGGTTTGCCCAAGAGTTTTGGACAGTCTTTGTTGCAGATTTTGTGGCTGAATAATCAAGATGGTGGTGGGATGACCGGTCCAATTGATGTTATTGGATCAATGACGTCTTTGACACAGGTTTGGCTGCATGGAAACAAATTCACAGGGACAATACCACAGAACATTGGAGATCTTGTATCTCTTAAGGAACTCAACCTCAATGGTAACCAGCTTGTTGGTCAGATTCCTCAAGCATTGGCTGACTTGAAGCTCGACAAATTGGACCTGGCAAACAACCAGTTAATGGGTGCAATACCCAAGTTTCAGTCTGGTAATGTTTCCTATAGTTCTAATTCATTTTGTCAAACTGATCCTGGGGTTCTATGTGCCCCACAAGTTACCGCACTTCTGGATTTTCTTGGTGATCTGAGTTACCCATCTAGTCTGACATCTGACTGGTCTGGTAATGACCCCTGTGGGGGGCCATGGTTGGGAATAAGTTGCAATCCGCAGTCGAAAGTTTCTGTCATCAATTTGCCTAGGCGCAAGCTAAATGGTACTCTGAGTCCTTCACTTGTGAATTTAGATTCTCTGATTGATATTAGGCTTGCTGGAAACAATATACGTGGTAAAGTTCCTACTAACCTCACTGAGTTGAAATCCTTGACAACATTGGATATAAGTGGAAACAATATTGAGCCTCCATTACCAAAATTTCGTGACAATGTGAGACTCATCACTGATGGAAATCCTCTTCTAGTTGCTAATAAAACAGCCCCTTCTCCTTTACCTACCAGAAGCCCACCCCCACTCCAACCTCCAGCTCCAGCAGACAATCCGCCACCAGGTACCACAAAACCACCTCAATCACCAGTTGCCCCTAGTCCACCTTCGCCAACTCACTCAAATGCAGATGCACCTGAGTCGGAATCTCAACTCAAAAGCTCCAAAAGATCTAAACCAGTTATTGTTGTGGCTGGAGTTGCAGTTATAGCTGTATTTGGGATTCTTCTGTTGATGTGTCTATCGATATACTGGTGTAAGTACAGAAAAAACAACTTGGAGGCTCCTTGTTCCATTGTGGTTCACCCTAAAGACCCATCTGATCCAGAAAACAAGCTTAAGATTGCGGTTTCTAGCAATACAAACGGAAGCTTATCAACTAAAACTGGAACTACTTATTTGAGTAACAACAGCAGTGGAACACAAAGTTCTCATATGATTGATTCCGGTAACCTTGTCATATCTGTTCAAGTTCTTCGAAAGACCTTCATTCACAGAGATCTCAAATCTTCTAATATTCTTTTGGGTGATGACTTCCGCGCAAAAGTTTCGGATTTTGGATTGGTTAAACTTGCTCCAGATGGGGAGAAATCTGTTGCGACTAGGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACAACTAAAGTAGATGTGTTCAGCTTCGGCGTAGTGTTGATGGAGCTTGTGACTGGATTAATGGCACTGGATGAGAACCGGCCCGAGGAAAGTCGTTACTTGGCTGAGTGGTTTTGGCGAATCAAGTCAAGCAAGGAGAAGCTTATGGCTGCGGTTGATCCAACTATTGAGGTTACTGAAGAAACTTTTGAGAGCATCTCCTTAATAGCTGAACTTGCTGGACATTGCACTGCGAGGGAGCCAACACATCGGCCAGACATGGGACATGCAGTGAACGTGCTAGGCCAACTTGTTGAAAAGTGGAAACCAGTTGATGATGAATCAGAAAGTTTCTCTGGAATCGATTATAATCAACCTCTTTCCCAGATGCTAAAAGTTTGGCAGCAAGCAGAAAGCAGAGAGGGGCCTTATGAATTCCACTCAATTGACTATTGCTGCGATTCTCTGAGACTCTCAACTCTCTGGTCTCAGTTCAGCAAACAGCCAGGGTCTCGGATGGGGGAGCTGGCATCTCAGAAACATGTTCAATTCATTTTATCAAAAGCAAAGGAGAAGGACTCTTATGAGTCGGTTTTGATGGAGCATATAAGATTGAATGGAGCTTACTGGGGTTTGACAACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCGATGAGGTTGTTTCAGAGGTCATGCAGTGCCAGCATGAGTCAGGTGGCTTTGGTGGTAACAGTGGACATGATCCACACATACTCTATACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATGTCGAAAAAGTTGCAGATTATGTAGCTGGACTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGGTTTTCATATATTGCTATTTGTTGTCTCGCATTACTACATCTTTTGGATAAAATCAATGCGGAGAAAGCTGCGGACTATATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGGTCAAACCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGCGAGCGGCAAGTTAAATCAGGTGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAACCATGATTGACAGGGTTCATTGGATCGATAAGCAAAAGCTTGTCAAGTTCATTTTAGACTGCCAGGACACTGAAAATGGGGGAATTTCTGATAGAGCAGATGATGCATGTGATGCCTACCATACATACTTTGGTGTAGCAGGACTTTCCTTGCTTGAATATCCTGGGGTTAAAGCCATAGATCCAGCTTATGGTTTGCCAGTTGATGTTGTAAATAGGATTATCTTAGGCATAAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1147

Amino Acids

125.0

Weight (kDa)

5.24

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	135 - 277	7.8e-07	Leucine-rich repeat region
LRR_8	PF13855	234 - 292	1.8e-06	Leucine rich repeat
LRRNT_2	PF08263	322 - 360	3.1e-06	Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr	PF07714	612 - 763	6.1e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	613 - 763	1.3e-20	Protein kinase domain
Prenyltrans	PF00432	841 - 1131	2.7e-92	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26630 FvH4_3g26630 FvH4_6g20300
malus_domestica	MD03G1154600.v1.1 MD12G1040200.v1.1 MD14G1038700.v1.1
prunus_persica	Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.6G143800_v2.0.a1 Prupe.7G094700_v2.0.a1
pyrus_communis	pycom03g10840 pycom12g03440 pycom14g03340
rosa_chinensis	RchiOBHm_Chr3g0475921 RchiOBHm_Chr5g0048201
rosa_laevigata	RLG00000023801 RLG00000034502
rosa_multiflora	Rmu_sc0001408.1_g000015 Rmu_sc0009168.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033720 Rroxscaffold_6G00405730
rosa_rugosa	Rorug03G0151900 Rorug05G0237000 Rorug05G0237100
rosa_samantha	Rh3AG202700 Rh3BG232600 Rh3CG228000 Rh3DG228200 Rh5AG316200 Rh5BG326800 Rh5CG353000 Rh5DG337800
rosa_wichuraiana	Rw3G018440 Rw5G029640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2364
AatII	GACGTC	1 cut(s)	701
Acc36I	ACCTGC	2 cut(s)	2767, 3032
Acc65I	GGTACC	1 cut(s)	1421
AccB1I	GGYRCC	2 cut(s)	47, 1421
AccB7I	CCANNNNNTGG	3 cut(s)	131, 877, 3389
AccBSI	CCGCTC	1 cut(s)	3115
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	1896
AclWI	GGATC	8 cut(s)	697, 938, 1673, 2168, 2738, 2869, 3230, 3374
AcoI	YGGCCR	2 cut(s)	122, 2267
AcsI	RAATTY	5 cut(s)	731, 1153, 1286, 2429, 3282
AcuI	CTGAAG	1 cut(s)	2214
AcyI	GRCGYC	1 cut(s)	698
AfaI	GTAC	3 cut(s)	1132, 1423, 1619
AflII	CTTAAG	3 cut(s)	776, 1694, 2764
AflIII	ACRYGT	2 cut(s)	2536, 2877
AgeI	ACCGGT	1 cut(s)	668
AjnI	CCWGG	7 cut(s)	858, 946, 1417, 2500, 3022, 3261, 3361
Alw26I	GTCTC	8 cut(s)	404, 1297, 2458, 2487, 2511, 2930, 3039, 3072
AlwI	GGATC	8 cut(s)	697, 938, 1673, 2168, 2738, 2869, 3230, 3374
Ama87I	CYCGRG	1 cut(s)	2099
AoxI	GGCC	9 cut(s)	122, 158, 388, 1055, 2096, 2267, 2299, 2420, 2784
ApeKI	GCWGC	6 cut(s)	565, 718, 2165, 2398, 2451, 2969
ApoI	RAATTY	5 cut(s)	731, 1153, 1286, 2429, 3282
AseI	ATTAAT	1 cut(s)	2075
AsiGI	ACCGGT	1 cut(s)	668
Asp700I	GAANNNNTTC	2 cut(s)	83, 287
Asp718I	GGTACC	1 cut(s)	1421
AspA2I	CCTAGG	1 cut(s)	1112
AspLEI	GCGC	2 cut(s)	1119, 1898
AspS9I	GGNCC	7 cut(s)	224, 671, 856, 1055, 2097, 2420, 3088
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	5 cut(s)	1007, 1434, 1652, 1895, 2897
AsuII	TTCGAA	1 cut(s)	1834
AvaI	CYCGRG	1 cut(s)	2099
AvaII	GGWCC	4 cut(s)	224, 671, 856, 3088
AvrII	CCTAGG	1 cut(s)	1112
BaeGI	GKGCMC	1 cut(s)	964
BalI	TGGCCA	1 cut(s)	124
BanI	GGYRCC	2 cut(s)	47, 1421
BbsI	GAAGAC	1 cut(s)	266
BbvI	GCAGC	6 cut(s)	552, 705, 2152, 2410, 2438, 2956
BcgI	CGANNNNNNTGC	6 cut(s)	1479, 1513, 1887, 1921, 2807, 2841
BciT130I	CCWGG	7 cut(s)	860, 948, 1419, 2502, 3024, 3263, 3363
BciVI	GTATCC	1 cut(s)	1973
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	8 cut(s)	404, 1297, 2458, 2487, 2511, 2930, 3039, 3072
BfaI	CTAG	8 cut(s)	1014, 1113, 1331, 1455, 1710, 1959, 2297, 3192
BfmI	CTRYAG	1 cut(s)	916
BfrI	CTTAAG	3 cut(s)	776, 1694, 2764
BfuAI	ACCTGC	2 cut(s)	2767, 3032
BfuI	GTATCC	1 cut(s)	1973
BglII	AGATCT	3 cut(s)	763, 1526, 1855
BisI	GCNGC	7 cut(s)	566, 719, 2166, 2399, 2452, 2970, 3116
BlnI	CCTAGG	1 cut(s)	1112
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	7 cut(s)	567, 720, 2167, 2400, 2453, 2971, 3117
Bme1390I	CCNGG	8 cut(s)	445, 860, 948, 1419, 2502, 3024, 3263, 3363
Bme18I	GGWCC	4 cut(s)	224, 671, 856, 3088
BmeT110I	CYCGRG	1 cut(s)	2099
BmgT120I	GGNCC	7 cut(s)	224, 671, 856, 1055, 2097, 2420, 3088
BmiI	GGNNCC	6 cut(s)	49, 1056, 1423, 1641, 2256, 2421
BmrFI	CCNGG	8 cut(s)	445, 860, 948, 1419, 2502, 3024, 3263, 3363
BmrI	ACTGGG	1 cut(s)	2632
BmsI	GCATC	8 cut(s)	552, 1477, 2220, 2373, 2534, 3005, 3292, 3301
BmuI	ACTGGG	1 cut(s)	2632
BpiI	GAAGAC	1 cut(s)	266
BplI	GAGNNNNNCTC	4 cut(s)	2198, 2230, 2558, 2590
BpmI	CTGGAG	4 cut(s)	1377, 1383, 1572, 1917
Bpu1102I	GCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	1834
BpuEI	CTTGAG	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	445
Bsa29I	ATCGAT	3 cut(s)	1601, 2358, 3225
BsaAI	YACGTR	1 cut(s)	1199
BsaBI	GATNNNNATC	2 cut(s)	1320, 2364
BsaHI	GRCGYC	1 cut(s)	698
BsaI	GGTCTC	3 cut(s)	2487, 2511, 3072
BsaJI	CCNNGG	7 cut(s)	268, 947, 1058, 1112, 2100, 2501, 3362
BsaWI	WCCGGW	2 cut(s)	668, 1802
BsaXI	ACNNNNNCTCC	6 cut(s)	753, 783, 1368, 1398, 1545, 1575
Bse118I	RCCGGY	2 cut(s)	668, 2094
Bse3DI	GCAATG	2 cut(s)	545, 2239
Bse8I	GATNNNNATC	2 cut(s)	1320, 2364
BseBI	CCWGG	7 cut(s)	860, 948, 1419, 2502, 3024, 3263, 3363
BseCI	ATCGAT	3 cut(s)	1601, 2358, 3225
BseDI	CCNNGG	7 cut(s)	268, 947, 1058, 1112, 2100, 2501, 3362
BseGI	GGATG	9 cut(s)	142, 567, 669, 2092, 2517, 2674, 2818, 3020, 3104
BseJI	GATNNNNATC	2 cut(s)	1320, 2364
BseMI	GCAATG	2 cut(s)	545, 2239
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	6 cut(s)	552, 705, 2152, 2410, 2438, 2956
BseYI	CCCAGC	1 cut(s)	1967
BsgI	GTGCAG	1 cut(s)	2795
Bsh1236I	CGCG	1 cut(s)	1896
BshFI	GGCC	9 cut(s)	124, 160, 390, 1057, 2098, 2269, 2301, 2422, 2786
BshNI	GGYRCC	2 cut(s)	47, 1421
BshTI	ACCGGT	1 cut(s)	668
BshVI	ATCGAT	3 cut(s)	1601, 2358, 3225
BsiHKCI	CYCGRG	1 cut(s)	2099
BsiSI	CCGG	4 cut(s)	444, 669, 1803, 2095
BslFI	GGGAC	4 cut(s)	754, 1984, 2292, 2888
BsmAI	GTCTC	8 cut(s)	404, 1297, 2458, 2487, 2511, 2930, 3039, 3072
BsmFI	GGGAC	4 cut(s)	754, 1984, 2292, 2888
BsmI	GAATGC	2 cut(s)	439, 533
BsnI	GGCC	9 cut(s)	124, 160, 390, 1057, 2098, 2269, 2301, 2422, 2786
Bso31I	GGTCTC	3 cut(s)	2487, 2511, 3072
BsoBI	CYCGRG	1 cut(s)	2099
Bsp119I	TTCGAA	1 cut(s)	1834
Bsp1286I	GDGCHC	1 cut(s)	964
Bsp1720I	GCTNAGC	1 cut(s)	480
Bsp19I	CCATGG	1 cut(s)	1058
BspANI	GGCC	9 cut(s)	124, 160, 390, 1057, 2098, 2269, 2301, 2422, 2786
BspDI	ATCGAT	3 cut(s)	1601, 2358, 3225
BspFNI	CGCG	1 cut(s)	1896
BspHI	TCATGA	1 cut(s)	2998
BspLI	GGNNCC	6 cut(s)	49, 1056, 1423, 1641, 2256, 2421
BspMI	ACCTGC	2 cut(s)	2767, 3032
BspPI	GGATC	8 cut(s)	697, 938, 1673, 2168, 2738, 2869, 3230, 3374
BspT104I	TTCGAA	1 cut(s)	1834
BspT107I	GGYRCC	2 cut(s)	47, 1421
BspTI	CTTAAG	3 cut(s)	776, 1694, 2764
BspTNI	GGTCTC	3 cut(s)	2487, 2511, 3072
BsrBI	CCGCTC	1 cut(s)	3115
BsrDI	GCAATG	2 cut(s)	545, 2239
BsrFI	RCCGGY	2 cut(s)	668, 2094
BssAI	RCCGGY	2 cut(s)	668, 2094
BssECI	CCNNGG	7 cut(s)	268, 947, 1058, 1112, 2100, 2501, 3362
BssNI	GRCGYC	1 cut(s)	698
BssT1I	CCWWGG	3 cut(s)	268, 1058, 1112
Bst2UI	CCWGG	7 cut(s)	860, 948, 1419, 2502, 3024, 3263, 3363
Bst4CI	ACNGT	5 cut(s)	509, 618, 2665, 2735, 2901
Bst6I	CTCTTC	1 cut(s)	1332
BstACI	GRCGYC	1 cut(s)	698
BstAFI	CTTAAG	3 cut(s)	776, 1694, 2764
BstAPI	GCANNNNNTGC	2 cut(s)	3302, 3311
BstBAI	YACGTR	1 cut(s)	1199
BstBI	TTCGAA	1 cut(s)	1834
BstC8I	GCNNGC	9 cut(s)	126, 1121, 1182, 1965, 2403, 2523, 2705, 3020, 3113
BstDSI	CCRYGG	1 cut(s)	1058
BstEII	GGTNACC	2 cut(s)	797, 1805
BstF5I	GGATG	9 cut(s)	142, 567, 669, 2092, 2517, 2674, 2818, 3020, 3104
BstFNI	CGCG	1 cut(s)	1896
BstHHI	GCGC	2 cut(s)	1119, 1898
BstMAI	GTCTC	8 cut(s)	404, 1297, 2458, 2487, 2511, 2930, 3039, 3072
BstMWI	GCNNNNNNNGC	8 cut(s)	256, 1556, 1565, 2231, 2704, 2966, 3302, 3311
BstNI	CCWGG	7 cut(s)	860, 948, 1419, 2502, 3024, 3263, 3363
BstNSI	RCATGY	4 cut(s)	2285, 2540, 2881, 3309
BstPI	GGTNACC	2 cut(s)	797, 1805
BstSCI	CCNGG	8 cut(s)	443, 858, 946, 1417, 2500, 3022, 3261, 3361
BstSFI	CTRYAG	1 cut(s)	916
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	1 cut(s)	1896
BstV1I	GCAGC	6 cut(s)	552, 705, 2152, 2410, 2438, 2956
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	4 cut(s)	763, 1526, 1855, 3379
BstXI	CCANNNNNNTGG	2 cut(s)	293, 809
BstYI	RGATCY	4 cut(s)	763, 1526, 1855, 3379
Bsu15I	ATCGAT	3 cut(s)	1601, 2358, 3225
BsuI	GTATCC	1 cut(s)	1973
BsuRI	GGCC	9 cut(s)	124, 160, 390, 1057, 2098, 2269, 2301, 2422, 2786
BsuTUI	ATCGAT	3 cut(s)	1601, 2358, 3225
BtgI	CCRYGG	1 cut(s)	1058
BtsCI	GGATG	9 cut(s)	142, 567, 669, 2092, 2517, 2674, 2818, 3020, 3104
BtsI	GCAGTG	5 cut(s)	1777, 2007, 2244, 2292, 2705
BveI	ACCTGC	2 cut(s)	2767, 3032
Cac8I	GCNNGC	9 cut(s)	126, 1121, 1182, 1965, 2403, 2523, 2705, 3020, 3113
CciI	TCATGA	1 cut(s)	2998
CfoI	GCGC	2 cut(s)	1119, 1898
Cfr10I	RCCGGY	2 cut(s)	668, 2094
Cfr13I	GGNCC	7 cut(s)	224, 671, 856, 1055, 2097, 2420, 3088
ClaI	ATCGAT	3 cut(s)	1601, 2358, 3225
CseI	GACGC	1 cut(s)	426
CsiI	ACCWGGT	1 cut(s)	1417
Csp6I	GTAC	3 cut(s)	1131, 1422, 1618
CspAI	ACCGGT	1 cut(s)	668
CspCI	CAANNNNNGTGG	4 cut(s)	1180, 1215, 1753, 1788
CviQI	GTAC	3 cut(s)	1131, 1422, 1618
EaeI	YGGCCR	2 cut(s)	122, 2267
Eam1104I	CTCTTC	1 cut(s)	1332
EarI	CTCTTC	1 cut(s)	1332
EciI	GGCGGA	2 cut(s)	1401, 3021
Eco130I	CCWWGG	3 cut(s)	268, 1058, 1112
Eco31I	GGTCTC	3 cut(s)	2487, 2511, 3072
Eco47I	GGWCC	4 cut(s)	224, 671, 856, 3088
Eco57I	CTGAAG	1 cut(s)	2214
Eco88I	CYCGRG	1 cut(s)	2099
Eco91I	GGTNACC	2 cut(s)	797, 1805
EcoO109I	RGGNCCY	3 cut(s)	224, 2420, 3088
EcoO65I	GGTNACC	2 cut(s)	797, 1805
EcoRI	GAATTC	1 cut(s)	2429
EcoRII	CCWGG	7 cut(s)	858, 946, 1417, 2500, 3022, 3261, 3361
EcoT14I	CCWWGG	3 cut(s)	268, 1058, 1112
EcoT22I	ATGCAT	1 cut(s)	3307
ErhI	CCWWGG	3 cut(s)	268, 1058, 1112
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	4 cut(s)	754, 1984, 2292, 2888
FauNDI	CATATG	1 cut(s)	1791
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	7 cut(s)	566, 719, 2166, 2399, 2452, 2970, 3116
FokI	GGATG	9 cut(s)	149, 574, 676, 2099, 2524, 2681, 2825, 3027, 3111
Fsp4HI	GCNGC	7 cut(s)	566, 719, 2166, 2399, 2452, 2970, 3116
FspBI	CTAG	8 cut(s)	1014, 1113, 1331, 1455, 1710, 1959, 2297, 3192
GlaI	GCGC	2 cut(s)	1118, 1897
GluI	GCNGC	7 cut(s)	566, 719, 2166, 2399, 2452, 2970, 3116
GsaI	CCCAGC	1 cut(s)	1971
GsuI	CTGGAG	4 cut(s)	1377, 1383, 1572, 1917
HaeIII	GGCC	9 cut(s)	124, 160, 390, 1057, 2098, 2269, 2301, 2422, 2786
HapII	CCGG	4 cut(s)	444, 669, 1803, 2095
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	2 cut(s)	1119, 1898
Hin1I	GRCGYC	1 cut(s)	698
Hin6I	GCGC	2 cut(s)	1117, 1896
HinP1I	GCGC	2 cut(s)	1117, 1896
HindIII	AAGCTT	6 cut(s)	1691, 1726, 2156, 2654, 3155, 3236
HpaII	CCGG	4 cut(s)	444, 669, 1803, 2095
HphI	GGTGA	5 cut(s)	1007, 1434, 1652, 1895, 2897
Hpy166II	GTNNAC	5 cut(s)	441, 1460, 1660, 2290, 2738
Hpy8I	GTNNAC	5 cut(s)	441, 1460, 1660, 2290, 2738
HpyAV	CCTTC	6 cut(s)	1152, 1362, 1473, 1852, 2563, 3101
HpyCH4III	ACNGT	5 cut(s)	509, 618, 2665, 2735, 2901
HpyCH4IV	ACGT	4 cut(s)	308, 698, 1198, 2292
HpyF10VI	GCNNNNNNNGC	8 cut(s)	256, 1556, 1565, 2231, 2704, 2966, 3302, 3311
HpySE526I	ACGT	4 cut(s)	308, 698, 1198, 2292
Hsp92I	GRCGYC	1 cut(s)	698
HspAI	GCGC	2 cut(s)	1117, 1896
KpnI	GGTACC	1 cut(s)	1425
LmnI	GCTCC	9 cut(s)	1402, 1523, 1645, 1936, 2059, 2254, 2518, 2596, 2615
Lsp1109I	GCAGC	6 cut(s)	552, 705, 2152, 2410, 2438, 2956
LweI	GCATC	8 cut(s)	552, 1477, 2220, 2373, 2534, 3005, 3292, 3301
MabI	ACCWGGT	1 cut(s)	1417
MaeI	CTAG	8 cut(s)	1014, 1113, 1331, 1455, 1710, 1959, 2297, 3192
MaeII	ACGT	4 cut(s)	308, 698, 1198, 2292
MbiI	CCGCTC	1 cut(s)	3115
MfeI	CAATTG	2 cut(s)	675, 2439
MflI	RGATCY	4 cut(s)	763, 1526, 1855, 3379
MhlI	GDGCHC	1 cut(s)	964
MlsI	TGGCCA	1 cut(s)	124
MluNI	TGGCCA	1 cut(s)	124
MlyI	GAGTC	8 cut(s)	1147, 1299, 1505, 2460, 2567, 2591, 2720, 3041
MmeI	TCCRAC	5 cut(s)	78, 499, 1411, 1479, 2201
Mox20I	TGGCCA	1 cut(s)	124
Mph1103I	ATGCAT	1 cut(s)	3307
MroXI	GAANNNNTTC	2 cut(s)	83, 287
MscI	TGGCCA	1 cut(s)	124
MslI	CAYNNNNRTG	2 cut(s)	291, 1479
Msp20I	TGGCCA	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	430
MspCI	CTTAAG	3 cut(s)	776, 1694, 2764
MspI	CCGG	4 cut(s)	444, 669, 1803, 2095
MspR9I	CCNGG	8 cut(s)	445, 860, 948, 1419, 2502, 3024, 3263, 3363
MunI	CAATTG	2 cut(s)	675, 2439
Mva1269I	GAATGC	2 cut(s)	439, 533
MvaI	CCWGG	7 cut(s)	860, 948, 1419, 2502, 3024, 3263, 3363
MvnI	CGCG	1 cut(s)	1896
MwoI	GCNNNNNNNGC	8 cut(s)	256, 1556, 1565, 2231, 2704, 2966, 3302, 3311
NciI	CCSGG	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	1058
NdeI	CATATG	1 cut(s)	1791
NlaIV	GGNNCC	6 cut(s)	49, 1056, 1423, 1641, 2256, 2421
NmuCI	GTSAC	2 cut(s)	1292, 2065
NsiI	ATGCAT	1 cut(s)	3307
NspI	RCATGY	4 cut(s)	2285, 2540, 2881, 3309
NspV	TTCGAA	1 cut(s)	1834
PagI	TCATGA	1 cut(s)	2998
PciI	ACATGT	2 cut(s)	2536, 2877
PctI	GAATGC	2 cut(s)	439, 533
PdmI	GAANNNNTTC	2 cut(s)	83, 287
PflMI	CCANNNNNTGG	3 cut(s)	131, 877, 3389
PinAI	ACCGGT	1 cut(s)	668
PkrI	GCNGC	7 cut(s)	567, 720, 2167, 2400, 2453, 2971, 3117
PleI	GAGTC	8 cut(s)	1146, 1299, 1504, 2460, 2567, 2590, 2719, 3040
PpsI	GAGTC	8 cut(s)	1146, 1299, 1504, 2460, 2567, 2590, 2719, 3040
Ppu21I	YACGTR	1 cut(s)	1199
PpuMI	RGGWCCY	2 cut(s)	224, 3088
PscI	ACATGT	2 cut(s)	2536, 2877
PshBI	ATTAAT	1 cut(s)	2075
PsiI	TTATAA	1 cut(s)	2364
Psp5II	RGGWCCY	2 cut(s)	224, 3088
Psp6I	CCWGG	7 cut(s)	858, 946, 1417, 2500, 3022, 3261, 3361
PspEI	GGTNACC	2 cut(s)	797, 1805
PspFI	CCCAGC	1 cut(s)	1967
PspGI	CCWGG	7 cut(s)	858, 946, 1417, 2500, 3022, 3261, 3361
PspN4I	GGNNCC	6 cut(s)	49, 1056, 1423, 1641, 2256, 2421
PspPI	GGNCC	7 cut(s)	224, 671, 856, 1055, 2097, 2420, 3088
PspPPI	RGGWCCY	2 cut(s)	224, 3088
PsuI	RGATCY	4 cut(s)	763, 1526, 1855, 3379
RsaI	GTAC	3 cut(s)	1132, 1423, 1619
RsaNI	GTAC	3 cut(s)	1131, 1422, 1618
RseI	CAYNNNNRTG	2 cut(s)	291, 1479
SatI	GCNGC	7 cut(s)	566, 719, 2166, 2399, 2452, 2970, 3116
Sau96I	GGNCC	7 cut(s)	224, 671, 856, 1055, 2097, 2420, 3088
SchI	GAGTC	8 cut(s)	1147, 1299, 1505, 2460, 2567, 2591, 2720, 3041
ScrFI	CCNGG	8 cut(s)	445, 860, 948, 1419, 2502, 3024, 3263, 3363
SduI	GDGCHC	1 cut(s)	964
SexAI	ACCWGGT	1 cut(s)	1417
SfaNI	GCATC	8 cut(s)	552, 1477, 2220, 2373, 2534, 3005, 3292, 3301
SfcI	CTRYAG	1 cut(s)	916
SfuI	TTCGAA	1 cut(s)	1834
SinI	GGWCC	4 cut(s)	224, 671, 856, 3088
SmiMI	CAYNNNNRTG	2 cut(s)	291, 1479
SmlI	CTYRAG	4 cut(s)	776, 822, 1694, 2764
SmoI	CTYRAG	4 cut(s)	776, 822, 1694, 2764
SspI	AATATT	2 cut(s)	1267, 1873
SspMI	CTAG	8 cut(s)	1014, 1113, 1331, 1455, 1710, 1959, 2297, 3192
StyD4I	CCNGG	8 cut(s)	443, 858, 946, 1417, 2500, 3022, 3261, 3361
StyI	CCWWGG	3 cut(s)	268, 1058, 1112
TaaI	ACNGT	5 cut(s)	509, 618, 2665, 2735, 2901
TaiI	ACGT	4 cut(s)	311, 701, 1201, 2295
TaqI	TCGA	8 cut(s)	846, 1088, 1601, 1834, 2358, 2673, 2817, 3225
TatI	WGTACW	1 cut(s)	1617
TauI	GCSGC	1 cut(s)	3118
TseFI	GTSAC	2 cut(s)	1292, 2065
TseI	GCWGC	6 cut(s)	565, 718, 2165, 2398, 2451, 2969
Tsp45I	GTSAC	2 cut(s)	1292, 2065
TspGWI	ACGGA	1 cut(s)	1737
Van91I	CCANNNNNTGG	3 cut(s)	131, 877, 3389
Vha464I	CTTAAG	3 cut(s)	776, 1694, 2764
VpaK11BI	GGWCC	4 cut(s)	224, 671, 856, 3088
VspI	ATTAAT	1 cut(s)	2075
XapI	RAATTY	5 cut(s)	731, 1153, 1286, 2429, 3282
XceI	RCATGY	4 cut(s)	2285, 2540, 2881, 3309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3326
XmaJI	CCTAGG	1 cut(s)	1112
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	2 cut(s)	83, 287
XspI	CTAG	8 cut(s)	1014, 1113, 1331, 1455, 1710, 1959, 2297, 3192
ZraI	GACGTC	1 cut(s)	699
Zsp2I	ATGCAT	1 cut(s)	3307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.