pycom12g19660

PHD and RING finger domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
21403992 .. 21406185
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1608 bp
ATGTTTTCGCGTTATTTGTTTTTTGTAATGCTCTCGAGAGGAGAGAGAGAGAGGAGAAACAGTAGCATTTCGGACCATTTTCCATTGTTTCCGGTGCTCGCTTTCTCTCTCAGGTGGATTTTTGGGTGCGAGGAACAGATGGTAAAGGGAGGGAAGGTTAGTTCCAAGCGAAAAATCAAGGCAAGGATTCCGTCAAAGTATCAGGGTTCCGATGATTCGGATGAGGATTATGTGATTTCGGGGGAAGAAAATGAAGTTTCTGAGGATTTAGAGGAGGATTACTGTTCTTCTTTGGATGGAGATGCGTCAGAAGACAGCTTTGGGAGTTTTGCGGACGAGGAGGAAGAGGAGGAGGAAGTGAAAAAGGTGAGGAAGAACAGTAGATCAAGAGCGAAAAGGGGTTCTGCTGGTTTAATTGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGACAAAGAGGAAGTGAAACCGGTTAGGAAGGGAATCAGGTCAAAAGTCCGAAATGGTTTTTCTGGTCGGCAGAAAAATGGGGTTAAACCGTTACGAAAGAGGAGAATGATTGCATATCGTGAGGTGGAGGATCAGGATTATAATGATGAAGATGATGATGACGATGAGGAATTTACACCAGATGAAGATGAATTTTCAGAGGTGGAAGAAAAACAAGTGGTGAAAAAGAAGAAAACTAATGGGAAACTGGGCAAGCGGCGGTTGAAGAAAAAGGGTCATTCTGTAAGAGGTGAAAAAAGGAGAAAATCTATGGCTTTAAAGAAGCCTTTGAGAAACAAAGGTAGAACGAGTCAGGCGATGGGGAGGAAGGCAAGAAGGGATGATGAACTTGAAAGTGATAGTGATTTTATTGGTAGTGTTGTGCCCATGAGAGTAACGAATGAGAAAAAAAGGGTTAGGAAAAGGAGGAGAATGTCCGTACCTTCAGATTCAGATTTTGTGCCTTCTGGAGCATCTGATTTTGACTACACCATCTCTGAGGAAGAGAGAGAGCAAGTACGAGAAGCCAAGGAGTTGTGTGAAAGATTGGAAACTAATTTGCGAAGCTCATCAGTGCCTACTAGCCTTCCGGAGGATACACTTGTACAGCTGCCAAGAAAGCCTCCTAGAAGGAAGGGCAAAGAGAAGATTGAACAAGTGAAGGTTGAGGTTGTAAAGCAGGTCTGTGGAATTTGTTTTTCCGAGGAAGATAAAAGAAGAGTGAGGGGAACATTAGACTGTTGCACTCATTATTTTTGTTTTGCATGCATCATGGAATGGGGAAAAGTGGAATCTCGTTGCCCTTTGTGCAAGCAAAGGTTTAAGACAATTAGTAAGCCTGCAAGATCTACGACCGGAATTGATTTGAGAGAAGTGGTGATACAGGTCCCTGAGCGTGATCAGGTCTATCAACCAACAGAAGAAGAACTCAGGAGTTATCTCGACCCTTATGAGAATGTGATCGATCTCGATGTACAGAATGCCACGAAGGAGGGGAAGATGGCCTCATGCTACTGTGTGATATATGTGATTCACCTGCTCACACCTTTTGTGTTGGTCTTGGTCGAGAAGTACCTGATGGTAATTGGTACTGTGAGGGTTGTAGACCTGTAG

Protein Analysis

536

Amino Acids

62.01

Weight (kDa)

5.81

Isoelectric Point (pI)

64.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 393 - 436 1.9e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AarI CACCTGC 1 cut(s) 1539
Acc36I ACCTGC 2 cut(s) 1165, 1539
AccI GTMKAC 1 cut(s) 1599
AccII CGCG 1 cut(s) 10
AccIII TCCGGA 1 cut(s) 1084
AciI CCGC 3 cut(s) 332, 712, 715
AclWI GGATC 1 cut(s) 594
AcsI RAATTY 3 cut(s) 626, 647, 1185
AcuI CTGAAG 1 cut(s) 924
AfaI GTAC 6 cut(s) 936, 1014, 1101, 1470, 1568, 1585
AfiI CCNNNNNNNGG 1 cut(s) 1087
AgeI ACCGGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 721, 848, 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AloI GAACNNNNNNTCC 2 cut(s) 145, 177
AluBI AGCT 3 cut(s) 318, 1062, 1105
AluI AGCT 3 cut(s) 318, 1062, 1105
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 1 cut(s) 594
Ama87I CYCGRG 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 1084
AoxI GGCC 1 cut(s) 1497
ApeKI GCWGC 1 cut(s) 1105
ApoI RAATTY 3 cut(s) 626, 647, 1185
AsiGI ACCGGT 1 cut(s) 475
AspS9I GGNCC 2 cut(s) 73, 1381
AsuHPI GGTGA 5 cut(s) 379, 688, 758, 1384, 1520
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 2 cut(s) 73, 1381
BaeGI GKGCMC 1 cut(s) 882
BaeI ACNNNNGTAYC 2 cut(s) 1083, 1116
BarI GAAGNNNNNNTAC 2 cut(s) 1359, 1391
BbsI GAAGAC 2 cut(s) 318, 462
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 1092
BccI CCATC 6 cut(s) 133, 290, 808, 995, 1489, 1567
BciVI GTATCC 1 cut(s) 1084
BclI TGATCA 1 cut(s) 1393
BfaI CTAG 2 cut(s) 1077, 1122
BfmI CTRYAG 1 cut(s) 1604
BfuAI ACCTGC 2 cut(s) 1165, 1539
BfuI GTATCC 1 cut(s) 1084
BglII AGATCT 1 cut(s) 1340
BisI GCNGC 2 cut(s) 713, 1106
BlsI GCNGC 2 cut(s) 714, 1107
Bme18I GGWCC 2 cut(s) 73, 1381
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 73, 1381
BmiI GGNNCC 2 cut(s) 208, 1383
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 3 cut(s) 292, 977, 1272
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 2 cut(s) 318, 462
BpmI CTGGAG 1 cut(s) 984
Bpu10I CCTNAGC 1 cut(s) 1386
Bsa29I ATCGAT 1 cut(s) 1458
BsaJI CCNNGG 2 cut(s) 1023, 1197
BsaWI WCCGGW 4 cut(s) 91, 475, 1084, 1349
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 141, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 1087
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 1084
BseCI ATCGAT 1 cut(s) 1458
BseDI CCNNGG 2 cut(s) 1023, 1197
BseGI GGATG 3 cut(s) 226, 301, 841
BseLI CCNNNNNNNGG 1 cut(s) 1087
BseMII CTCAG 5 cut(s) 124, 252, 984, 1377, 1438
BseNI ACTGG 1 cut(s) 708
BseSI GKGCMC 1 cut(s) 882
BseXI GCAGC 1 cut(s) 1092
Bsh1236I CGCG 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 1350
BshFI GGCC 1 cut(s) 1499
BshTI ACCGGT 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 1458
BsiEI CGRYCG 1 cut(s) 1350
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 4 cut(s) 92, 476, 1085, 1350
BslFI GGGAC 1 cut(s) 1367
BslI CCNNNNNNNGG 1 cut(s) 1087
BsmFI GGGAC 1 cut(s) 1367
BsmI GAATGC 1 cut(s) 1480
BsnI GGCC 1 cut(s) 1499
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 99, 882
Bsp13I TCCGGA 1 cut(s) 1084
Bsp1407I TGTACA 2 cut(s) 1099, 1468
Bsp143I GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
BspACI CCGC 3 cut(s) 332, 712, 715
BspANI GGCC 1 cut(s) 1499
BspCNI CTCAG 5 cut(s) 123, 253, 985, 1378, 1437
BspDI ATCGAT 1 cut(s) 1458
BspEI TCCGGA 1 cut(s) 1084
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 208, 1383
BspMI ACCTGC 2 cut(s) 1165, 1539
BspPI GGATC 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 475
BsrGI TGTACA 2 cut(s) 1099, 1468
BsrI ACTGG 1 cut(s) 708
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 1023, 1197
BssMI GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
BssT1I CCWWGG 1 cut(s) 1023
Bst4CI ACNGT 7 cut(s) 62, 284, 380, 546, 1235, 1511, 1588
Bst6I CTCTTC 3 cut(s) 339, 993, 1207
BstAUI TGTACA 2 cut(s) 1099, 1468
BstC8I GCNNGC 5 cut(s) 99, 710, 1261, 1307, 1335
BstDEI CTNAG 5 cut(s) 110, 261, 993, 1386, 1424
BstENI CCTNNNNNAGG 1 cut(s) 1085
BstF5I GGATG 3 cut(s) 226, 301, 841
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 6 cut(s) 386, 589, 1343, 1396, 1458, 1462
BstMBI GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
BstMCI CGRYCG 1 cut(s) 1350
BstMWI GCNNNNNNNGC 2 cut(s) 1114, 1302
BstNSI RCATGY 1 cut(s) 1263
BstSFI CTRYAG 1 cut(s) 1604
BstSLI GKGCMC 1 cut(s) 882
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 1092
BstV2I GAAGAC 2 cut(s) 318, 462
BstX2I RGATCY 1 cut(s) 1340
BstYI RGATCY 1 cut(s) 1340
Bsu15I ATCGAT 1 cut(s) 1458
BsuI GTATCC 1 cut(s) 1084
BsuRI GGCC 1 cut(s) 1499
BsuTUI ATCGAT 1 cut(s) 1458
BtgZI GCGATG 1 cut(s) 827
BtsCI GGATG 3 cut(s) 226, 301, 841
BtsIMutI CAGTG 1 cut(s) 1074
BveI ACCTGC 2 cut(s) 1165, 1539
Cac8I GCNNGC 5 cut(s) 99, 710, 1261, 1307, 1335
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 2 cut(s) 73, 1381
ClaI ATCGAT 1 cut(s) 1458
CseI GACGC 1 cut(s) 294
Csp6I GTAC 6 cut(s) 935, 1013, 1100, 1469, 1567, 1584
CspAI ACCGGT 1 cut(s) 475
CviAII CATG 4 cut(s) 883, 1260, 1267, 1503
CviQI GTAC 6 cut(s) 935, 1013, 1100, 1469, 1567, 1584
DdeI CTNAG 5 cut(s) 110, 261, 993, 1386, 1424
DpnI GATC 6 cut(s) 385, 588, 1342, 1395, 1457, 1461
DpnII GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
DraI TTTAAA 1 cut(s) 774
Eam1104I CTCTTC 3 cut(s) 339, 993, 1207
EarI CTCTTC 3 cut(s) 339, 993, 1207
Eco130I CCWWGG 1 cut(s) 1023
Eco47I GGWCC 2 cut(s) 73, 1381
Eco57I CTGAAG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 1381
EcoT14I CCWWGG 1 cut(s) 1023
EcoT22I ATGCAT 1 cut(s) 1265
ErhI CCWWGG 1 cut(s) 1023
FaeI CATG 4 cut(s) 886, 1263, 1270, 1506
FaqI GGGAC 1 cut(s) 1367
FatI CATG 4 cut(s) 882, 1259, 1266, 1502
FbaI TGATCA 1 cut(s) 1393
FblI GTMKAC 1 cut(s) 1599
Fnu4HI GCNGC 2 cut(s) 713, 1106
FokI GGATG 3 cut(s) 233, 308, 848
Fsp4HI GCNGC 2 cut(s) 713, 1106
FspBI CTAG 2 cut(s) 1077, 1122
GluI GCNGC 2 cut(s) 713, 1106
GsuI CTGGAG 1 cut(s) 984
HaeIII GGCC 1 cut(s) 1499
HapII CCGG 4 cut(s) 92, 476, 1085, 1350
HgaI GACGC 1 cut(s) 294
Hin1II CATG 4 cut(s) 886, 1263, 1270, 1506
HinfI GANTC 7 cut(s) 187, 215, 489, 805, 944, 1286, 1525
HpaII CCGG 4 cut(s) 92, 476, 1085, 1350
HphI GGTGA 5 cut(s) 379, 688, 758, 1384, 1520
Hpy166II GTNNAC 1 cut(s) 1600
Hpy8I GTNNAC 1 cut(s) 1600
HpyCH4III ACNGT 7 cut(s) 62, 284, 380, 546, 1235, 1511, 1588
HpyCH4V TGCA 6 cut(s) 569, 1239, 1259, 1263, 1305, 1337
HpyF10VI GCNNNNNNNGC 2 cut(s) 1114, 1302
HpyF3I CTNAG 5 cut(s) 110, 261, 993, 1386, 1424
Hsp92II CATG 4 cut(s) 886, 1263, 1270, 1506
Kpn2I TCCGGA 1 cut(s) 1084
Ksp22I TGATCA 1 cut(s) 1393
Kzo9I GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
LmnI GCTCC 1 cut(s) 965
Lsp1109I GCAGC 1 cut(s) 1092
LweI GCATC 3 cut(s) 292, 977, 1272
MaeI CTAG 2 cut(s) 1077, 1122
MaeIII GTNAC 2 cut(s) 546, 889
MalI GATC 6 cut(s) 385, 588, 1342, 1395, 1457, 1461
MboI GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
MflI RGATCY 1 cut(s) 1340
MhlI GDGCHC 2 cut(s) 99, 882
MluCI AATT 8 cut(s) 414, 626, 647, 1051, 1185, 1323, 1353, 1578
MlyI GAGTC 1 cut(s) 814
Mph1103I ATGCAT 1 cut(s) 1265
MroI TCCGGA 1 cut(s) 1084
MseI TTAA 4 cut(s) 413, 540, 773, 1317
MspA1I CMGCKG 1 cut(s) 1105
MspI CCGG 4 cut(s) 92, 476, 1085, 1350
Mva1269I GAATGC 1 cut(s) 1480
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 1114, 1302
NdeII GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
NlaIII CATG 4 cut(s) 886, 1263, 1270, 1506
NlaIV GGNNCC 2 cut(s) 208, 1383
NsiI ATGCAT 1 cut(s) 1265
NspI RCATGY 1 cut(s) 1263
PaeI GCATGC 1 cut(s) 1263
PaeR7I CTCGAG 1 cut(s) 34
PaqCI CACCTGC 1 cut(s) 1539
PcsI WCGNNNNNNNCGW 1 cut(s) 809
PctI GAATGC 1 cut(s) 1480
PfeI GAWTC 6 cut(s) 187, 215, 489, 944, 1286, 1525
PinAI ACCGGT 1 cut(s) 475
PkrI GCNGC 2 cut(s) 714, 1107
PleI GAGTC 1 cut(s) 813
PpsI GAGTC 1 cut(s) 813
PpuMI RGGWCCY 1 cut(s) 1381
PsiI TTATAA 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 1381
PspN4I GGNNCC 2 cut(s) 208, 1383
PspPI GGNCC 2 cut(s) 73, 1381
PspPPI RGGWCCY 1 cut(s) 1381
PsuI RGATCY 1 cut(s) 1340
PvuII CAGCTG 1 cut(s) 1105
RsaI GTAC 6 cut(s) 936, 1014, 1101, 1470, 1568, 1585
RsaNI GTAC 6 cut(s) 935, 1013, 1100, 1469, 1567, 1584
SaqAI TTAA 4 cut(s) 413, 540, 773, 1317
SatI GCNGC 2 cut(s) 713, 1106
Sau3AI GATC 6 cut(s) 383, 586, 1340, 1393, 1455, 1459
Sau96I GGNCC 2 cut(s) 73, 1381
SchI GAGTC 1 cut(s) 814
SduI GDGCHC 2 cut(s) 99, 882
SfaNI GCATC 3 cut(s) 292, 977, 1272
SfcI CTRYAG 1 cut(s) 1604
Sfr274I CTCGAG 1 cut(s) 34
SinI GGWCC 2 cut(s) 73, 1381
SlaI CTCGAG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SphI GCATGC 1 cut(s) 1263
Sse9I AATT 8 cut(s) 414, 626, 647, 1051, 1185, 1323, 1353, 1578
SsiI CCGC 3 cut(s) 332, 712, 715
SspMI CTAG 2 cut(s) 1077, 1122
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 7 cut(s) 62, 284, 380, 546, 1235, 1511, 1588
TaqI TCGA 5 cut(s) 35, 1437, 1458, 1464, 1560
TasI AATT 8 cut(s) 414, 626, 647, 1051, 1185, 1323, 1353, 1578
TatI WGTACW 2 cut(s) 1099, 1468
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 6 cut(s) 187, 215, 489, 944, 1286, 1525
Tru1I TTAA 4 cut(s) 413, 540, 773, 1317
Tru9I TTAA 4 cut(s) 413, 540, 773, 1317
TscAI CASTG 1 cut(s) 1074
TseI GCWGC 1 cut(s) 1105
TspDTI ATGAA 5 cut(s) 267, 618, 654, 660, 855
TspGWI ACGGA 2 cut(s) 180, 922
TspRI CASTG 1 cut(s) 1074
VpaK11BI GGWCC 2 cut(s) 73, 1381
XagI CCTNNNNNAGG 1 cut(s) 1085
XapI RAATTY 3 cut(s) 626, 647, 1185
XceI RCATGY 1 cut(s) 1263
XhoI CTCGAG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 1599
XspI CTAG 2 cut(s) 1077, 1122
Zsp2I ATGCAT 1 cut(s) 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.