Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Forward (+)

6063960 .. 6067969

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGGTAAAGGGAGGGAAAGTTAGTTCCAAGCGAAGAGTCAAGCCCAGGATTCGGTCTGATTATAAGGGTTCAGATGATTCGGATGAAGATTATGTGATTTCAGATGAAGAAAAGCTAGTTTCTGAGGATTTGGAGGAGGATTATTGCTCCTCTTTGGATGGGAATGCATCAGAAGAGAGCCTTGGTAGTTTTGCAAAGGAGGAAGAGGAAGAGAGCTGGGGGAGAAAGAACAGTAGATCAAGAGCGAAAAAGGGTGTTGGTAGATCAAGAGCAAAAAAGGGTATTGATAGATCTATTGAGGACGAAGAGGTGGAGGATGAGCTGGAGGAGCAGGAGGAGGAGGAGGAAATGAAAAAGGTGAGAAAGAACGGTAGATCAAGAGTGAAAAAGGGTAAAGATATATTTATTGCGGACGAGGAGGAGGATGAGCTGGAGGAGGAGGAGGAAGCTGAGGAGGAAATGAAAAAGGTGAGAAAGAACGGTAGATCAAGAGTGAAAAAGGGTAAAGATATATTTATTGCGGAGGAGGAGGAGGATGAGCTGGAGGAGGAAGAAGAAGAAGAGGAAAAGGCAATGAAAGAGGTGAGGAAGGTGGCTAGATCACAGTCCCAAAACGGTTTCTCTGGAAGGCCGAAAAATAGGGTTAAAACATCACAAAAGAGGAGAAGGGCTACATATGAAGACATGGCAGATGAGGATTATGATGATGACGAAGATGACGACGACGACTACGATGAGGAATCTGATGAAGATGATTTTTCAGAATCGGAAGAAGAATCAAGGGTGAAAAAGAAGAAAACTAATGTGAAAATGGGCAAGCGGCGTTTAAAGAAAAAAGTTCCTGTAAGAAGAAAATCAAAGAAGCCTTTGAGAAAGAAACAAAAAAAGAATCGTACATTGAGGAGGAAAATAAGATCTGATGATGATGATGGTGATTTTATGGACAGTAACCTGCCTGTGAGAGAGAAGAACAAGAAAAAAAGGCCAAACAAAAGGAGATTTGTTGCTCCATCCGATTCAGATTTTGTGTCTTCTGGATCATCTGACTGTGATTACACCATTTCTGAGGAAGAGAGAGAGCAAGTGAGGGAAGCCAGGCAGTTGTGCGGAAGTTTGGAACCTAATTTCAGAAGCTCAATACTGCCTGACAAAATTCAGGAGAATGAGATTGTACAGCTGCCAAGAAAGCCTCCTGGTAGGAAAGGTAAAGAAAAGGTTGAGCAAGTGAAGGTCGAGGTGGTTAAGCAGGTCTGTGGAATTTGTCTCTCTGAGGAAGATAAGAGAAGAGTGAGGGGAACACTAGACTGCTGCACTCATTATTTTTGTTTTTCCTGCATCATGGAATGGGGCAAAGTGGAATCTCGCTGCCCGTTATGCAAGCAGAGGTTTAAAGCAATTAGTAAACCCACAAGAGCAGGAACTGATTTGAGAGACGTGGTGATAACAGTCCCTGAGCGTGATCAGGTTTATCAGCCAACAGAAGAAGAACTGAGAAGTTATCTTGACCCTTATGAGAATGTGATTTGTACAGAATGTCATGAAGGTGGAGAAGATGGGCTCATGCTACTGTGTGATGTGTGCGATTCACCTGCTCACACCTATTGTGTTGGTCTTGGGCGGGAAGTACCCGAAGGTAATTGGTACTGTAATGGTTGTAGACCTGTTGCTCTGGGATCCTCAAGTTCCCAGGTTCAAGGTTGGTTACCTGAGCAGAGAACTACAAACAACATCTTGCCTAATAGACAACCACCTGCTGTAAGTTTTGGTGAAGGTTTGGAGATAGACCTTAATTCAGTGTCCTCTCCTCGTTCCTATATTACTCAAGGATTTGGGAACTCCTCCTCCCCTTGGTTTCATGTTGGAGGTTTTCAACTAGCTTCCCCGGGATCTGGGGCAGGGGCACCAACTCTGTCAGGAAGACGTTTAATGCACCGTCATATTCAGCAATTGATTACTGCTAATAGAATGAATTATTTGGCCAGTAGAAATGAGAGGAATTCATCTGCTAATTTGAGTACTGATGTCTTAAATGCTCAAACTGCTCAGGGGAGGGAAACAGTAGTTCAGCATGCAAGGACAGACGGAATGGACAGATCTTTTCACACATTCTTTGAGGAGAGATTACAAGAAAACCCCTCACTACAAGTGCAGGATAATGATATCTTTTTGTCAACATCAGGCCATCAGAGAAGGCAAGTAGTCCAGGATCCAACTACAACTTCTGCTGATAGACCTAGCAATGGAACATTATGGCCTGGACTTACAGAGAATACAATATCAGGTCCCCCTCACTTCAGCAGTATATCCGATGGTGGTTTGTCCCCCAATACAGTTATGGGACCAAGTGATTTTCACAGAGCAAAGGAACAACTGCAATCATTGGTCATAAGCCACGTAAAAAACTTATCCCGAGATAGGGATTTAGGCCAAAGTACTACTACTTTCCAGGAGATCGCAAGGAGTGCTATGCACACTGTCCTAGCTGCATGTGAACTGGAGCACACAGGCAGTGAGGTAGTTCCCGTGCCGCCTTCGTCACCCTGCCCTCACATTGAATTAATGGCAGGAAAGACAAGTCTGATGAGAGGTTGCTGTTCATCTTGTTTTGCACAGTTCGTTGAGGACGTGGTAAAGAGGGTCATGGAATACAGACTACCGCCGTGGTTGAGATTAGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

893

Amino Acids

101.4

Weight (kDa)

5.47

Isoelectric Point (pI)

74.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	417 - 460	9e-07	Ring finger domain
PHD	PF00628	509 - 552	7.3e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	2 cut(s)	1597, 1759
Acc36I	ACCTGC	4 cut(s)	960, 1237, 1597, 1759
AccB1I	GGYRCC	1 cut(s)	1900
AccI	GTMKAC	1 cut(s)	1657
AciI	CCGC	7 cut(s)	410, 521, 820, 1107, 1618, 2528, 2657
AclWI	GGATC	6 cut(s)	1045, 1668, 1681, 1894, 2201, 2214
AcoI	YGGCCR	1 cut(s)	1977
AcsI	RAATTY	3 cut(s)	1152, 1257, 1996
AcuI	CTGAAG	1 cut(s)	2278
AfaI	GTAC	7 cut(s)	895, 1173, 1528, 1626, 1643, 2017, 2434
AfiI	CCNNNNNNNGG	6 cut(s)	51, 1848, 1889, 2240, 2415, 2416
AgsI	TTSAA	3 cut(s)	1694, 1871, 2555
AjiI	CACGTC	2 cut(s)	1435, 2626
AjnI	CCWGG	7 cut(s)	44, 1094, 1192, 1686, 2202, 2254, 2445
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 2203, 2235
AloI	GAACNNNNNNTCC	4 cut(s)	7, 39, 1826, 1858
Alw21I	GWGCWC	1 cut(s)	2502
Alw26I	GTCTC	2 cut(s)	1268, 1425
AlwI	GGATC	6 cut(s)	1045, 1668, 1681, 1894, 2201, 2214
AlwNI	CAGNNNCTG	2 cut(s)	1421, 1451
Ama87I	CYCGRG	2 cut(s)	1882, 2409
AoxI	GGCC	6 cut(s)	629, 983, 1977, 2179, 2252, 2425
ApeKI	GCWGC	4 cut(s)	1177, 1308, 1365, 2483
ApoI	RAATTY	3 cut(s)	1152, 1257, 1996
AseI	ATTAAT	1 cut(s)	2558
AspS9I	GGNCC	2 cut(s)	2282, 2339
AsuC2I	CCSGG	2 cut(s)	1883, 1884
AsuHPI	GGTGA	9 cut(s)	370, 481, 595, 796, 944, 1450, 1578, 1778, 2529
AvaI	CYCGRG	2 cut(s)	1882, 2409
AvaII	GGWCC	2 cut(s)	2282, 2339
BaeGI	GKGCMC	1 cut(s)	1903
BalI	TGGCCA	1 cut(s)	1979
BamHI	GGATCC	2 cut(s)	1673, 2206
BanI	GGYRCC	1 cut(s)	1900
BanII	GRGCYC	1 cut(s)	1560
BbsI	GAAGAC	3 cut(s)	687, 1023, 1924
Bbv12I	GWGCWC	1 cut(s)	2502
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	1164, 1295, 1352, 2470
BccI	CCATC	6 cut(s)	152, 923, 1018, 1547, 2190, 2303
BceAI	ACGGC	1 cut(s)	2644
BcgI	CGANNNNNNTGC	2 cut(s)	1571, 1605
BciT130I	CCWGG	7 cut(s)	46, 1096, 1194, 1688, 2204, 2256, 2447
BclI	TGATCA	1 cut(s)	1459
BcnI	CCSGG	2 cut(s)	1883, 1884
BcoDI	GTCTC	2 cut(s)	1268, 1425
BfaI	CTAG	6 cut(s)	116, 597, 1301, 1874, 2235, 2480
BfuAI	ACCTGC	4 cut(s)	960, 1237, 1597, 1759
BglII	AGATCT	3 cut(s)	290, 914, 2093
BisI	GCNGC	6 cut(s)	821, 1178, 1309, 1366, 2484, 2528
BlsI	GCNGC	6 cut(s)	822, 1179, 1310, 1367, 2485, 2529
BmcAI	AGTACT	2 cut(s)	2017, 2434
Bme1390I	CCNGG	9 cut(s)	46, 1096, 1194, 1688, 1883, 1884, 2204, 2256, 2447
Bme18I	GGWCC	2 cut(s)	2282, 2339
BmeT110I	CYCGRG	2 cut(s)	1882, 2409
BmgBI	CACGTC	2 cut(s)	1435, 2626
BmgT120I	GGNCC	2 cut(s)	2282, 2339
BmiI	GGNNCC	6 cut(s)	1119, 1675, 1902, 2208, 2284, 2340
BmrFI	CCNGG	9 cut(s)	46, 1096, 1194, 1688, 1883, 1884, 2204, 2256, 2447
BmsI	GCATC	2 cut(s)	176, 1344
BpiI	GAAGAC	3 cut(s)	687, 1023, 1924
BplI	GAGNNNNNCTC	1 cut(s)	2659
BpmI	CTGGAG	4 cut(s)	344, 452, 563, 2516
Bpu10I	CCTNAGC	4 cut(s)	450, 1452, 1707, 2043
BpuEI	CTTGAG	2 cut(s)	1663, 1806
BpuMI	CCSGG	2 cut(s)	1883, 1884
BsaAI	YACGTR	1 cut(s)	2395
BsaJI	CCNNGG	7 cut(s)	44, 181, 1686, 1847, 1881, 1882, 2660
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 1826, 1856
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 1848, 1889, 2240, 2415, 2416
Bse1I	ACTGG	2 cut(s)	1980, 2499
Bse3DI	GCAATG	2 cut(s)	579, 2245
BseBI	CCWGG	7 cut(s)	46, 1096, 1194, 1688, 2204, 2256, 2447
BseDI	CCNNGG	7 cut(s)	44, 181, 1686, 1847, 1881, 1882, 2660
BseGI	GGATG	6 cut(s)	88, 163, 322, 430, 541, 1010
BseLI	CCNNNNNNNGG	6 cut(s)	51, 1848, 1889, 2240, 2415, 2416
BseMI	GCAATG	2 cut(s)	579, 2245
BseMII	CTCAG	8 cut(s)	114, 441, 1056, 1260, 1443, 1481, 1698, 2057
BseNI	ACTGG	2 cut(s)	1980, 2499
BseSI	GKGCMC	1 cut(s)	1903
BseXI	GCAGC	4 cut(s)	1164, 1295, 1352, 2470
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	2 cut(s)	1294, 2168
BshFI	GGCC	6 cut(s)	631, 985, 1979, 2181, 2254, 2427
BshNI	GGYRCC	1 cut(s)	1900
BsiHKAI	GWGCWC	1 cut(s)	2502
BsiHKCI	CYCGRG	2 cut(s)	1882, 2409
BsiSI	CCGG	1 cut(s)	1883
BslFI	GGGAC	5 cut(s)	592, 1433, 2268, 2305, 2352
BslI	CCNNNNNNNGG	6 cut(s)	51, 1848, 1889, 2240, 2415, 2416
BsmAI	GTCTC	2 cut(s)	1268, 1425
BsmBI	CGTCTC	1 cut(s)	1425
BsmFI	GGGAC	5 cut(s)	592, 1433, 2268, 2305, 2352
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	6 cut(s)	631, 985, 1979, 2181, 2254, 2427
BsoBI	CYCGRG	2 cut(s)	1882, 2409
Bsp1286I	GDGCHC	3 cut(s)	1560, 1903, 2502
Bsp1407I	TGTACA	2 cut(s)	1171, 1526
BspACI	CCGC	7 cut(s)	410, 521, 820, 1107, 1618, 2528, 2657
BspANI	GGCC	6 cut(s)	631, 985, 1979, 2181, 2254, 2427
BspCNI	CTCAG	8 cut(s)	115, 442, 1057, 1261, 1444, 1482, 1699, 2056
BspHI	TCATGA	1 cut(s)	1537
BspLI	GGNNCC	6 cut(s)	1119, 1675, 1902, 2208, 2284, 2340
BspMI	ACCTGC	4 cut(s)	960, 1237, 1597, 1759
BspPI	GGATC	6 cut(s)	1045, 1668, 1681, 1894, 2201, 2214
BspT107I	GGYRCC	1 cut(s)	1900
BsrDI	GCAATG	2 cut(s)	579, 2245
BsrGI	TGTACA	2 cut(s)	1171, 1526
BsrI	ACTGG	2 cut(s)	1980, 2499
BssECI	CCNNGG	7 cut(s)	44, 181, 1686, 1847, 1881, 1882, 2660
BssT1I	CCWWGG	2 cut(s)	181, 1847
Bst2UI	CCWGG	7 cut(s)	46, 1096, 1194, 1688, 2204, 2256, 2447
Bst6I	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 555, 1065, 1279
BstAPI	GCANNNNNTGC	1 cut(s)	2462
BstAUI	TGTACA	2 cut(s)	1171, 1526
BstBAI	YACGTR	1 cut(s)	2395
BstC8I	GCNNGC	3 cut(s)	818, 1379, 2070
BstDEI	CTNAG	8 cut(s)	123, 450, 1065, 1269, 1452, 1490, 1707, 2043
BstDSI	CCRYGG	1 cut(s)	2660
BstEII	GGTNACC	1 cut(s)	1701
BstF5I	GGATG	6 cut(s)	88, 163, 322, 430, 541, 1010
BstMAI	GTCTC	2 cut(s)	1268, 1425
BstMWI	GCNNNNNNNGC	5 cut(s)	328, 1186, 1374, 2039, 2462
BstNI	CCWGG	7 cut(s)	46, 1096, 1194, 1688, 2204, 2256, 2447
BstNSI	RCATGY	2 cut(s)	2072, 2490
BstPI	GGTNACC	1 cut(s)	1701
BstSCI	CCNGG	9 cut(s)	44, 1094, 1192, 1686, 1881, 1882, 2202, 2254, 2445
BstSLI	GKGCMC	1 cut(s)	1903
BstV1I	GCAGC	4 cut(s)	1164, 1295, 1352, 2470
BstV2I	GAAGAC	3 cut(s)	687, 1023, 1924
BstX2I	RGATCY	6 cut(s)	290, 914, 1673, 1886, 2093, 2206
BstYI	RGATCY	6 cut(s)	290, 914, 1673, 1886, 2093, 2206
BsuRI	GGCC	6 cut(s)	631, 985, 1979, 2181, 2254, 2427
BtgI	CCRYGG	1 cut(s)	2660
BtrI	CACGTC	2 cut(s)	1435, 2626
BtsCI	GGATG	6 cut(s)	88, 163, 322, 430, 541, 1010
BtsI	GCAGTG	1 cut(s)	2515
BtsIMutI	CAGTG	3 cut(s)	1800, 2472, 2515
BveI	ACCTGC	4 cut(s)	960, 1237, 1597, 1759
Cac8I	GCNNGC	3 cut(s)	818, 1379, 2070
CaiI	CAGNNNCTG	2 cut(s)	1421, 1451
CciI	TCATGA	1 cut(s)	1537
Cfr13I	GGNCC	2 cut(s)	2282, 2339
Cfr9I	CCCGGG	1 cut(s)	1882
Csp6I	GTAC	7 cut(s)	894, 1172, 1527, 1625, 1642, 2016, 2433
CviAII	CATG	8 cut(s)	685, 1339, 1538, 1561, 1856, 2069, 2487, 2641
CviQI	GTAC	7 cut(s)	894, 1172, 1527, 1625, 1642, 2016, 2433
DdeI	CTNAG	8 cut(s)	123, 450, 1065, 1269, 1452, 1490, 1707, 2043
DraI	TTTAAA	2 cut(s)	828, 1390
EaeI	YGGCCR	1 cut(s)	1977
Eam1104I	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 555, 1065, 1279
EarI	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 555, 1065, 1279
Eco130I	CCWWGG	2 cut(s)	181, 1847
Eco24I	GRGCYC	1 cut(s)	1560
Eco32I	GATATC	1 cut(s)	2161
Eco47I	GGWCC	2 cut(s)	2282, 2339
Eco57I	CTGAAG	1 cut(s)	2278
Eco88I	CYCGRG	2 cut(s)	1882, 2409
Eco91I	GGTNACC	1 cut(s)	1701
EcoO109I	RGGNCCY	1 cut(s)	2282
EcoO65I	GGTNACC	1 cut(s)	1701
EcoRI	GAATTC	1 cut(s)	1996
EcoRII	CCWGG	7 cut(s)	44, 1094, 1192, 1686, 2202, 2254, 2445
EcoRV	GATATC	1 cut(s)	2161
EcoT14I	CCWWGG	2 cut(s)	181, 1847
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	1560
ErhI	CCWWGG	2 cut(s)	181, 1847
Esp3I	CGTCTC	1 cut(s)	1425
FaeI	CATG	8 cut(s)	688, 1342, 1541, 1564, 1859, 2072, 2490, 2644
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	5 cut(s)	592, 1433, 2268, 2305, 2352
FatI	CATG	8 cut(s)	684, 1338, 1537, 1560, 1855, 2068, 2486, 2640
FauI	CCCGC	1 cut(s)	1611
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	1459
FblI	GTMKAC	1 cut(s)	1657
Fnu4HI	GCNGC	6 cut(s)	821, 1178, 1309, 1366, 2484, 2528
FokI	GGATG	6 cut(s)	95, 170, 329, 437, 548, 997
FriOI	GRGCYC	1 cut(s)	1560
Fsp4HI	GCNGC	6 cut(s)	821, 1178, 1309, 1366, 2484, 2528
FspBI	CTAG	6 cut(s)	116, 597, 1301, 1874, 2235, 2480
GluI	GCNGC	6 cut(s)	821, 1178, 1309, 1366, 2484, 2528
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	4 cut(s)	344, 452, 563, 2516
HaeIII	GGCC	6 cut(s)	631, 985, 1979, 2181, 2254, 2427
HapII	CCGG	1 cut(s)	1883
Hin1II	CATG	8 cut(s)	688, 1342, 1541, 1564, 1859, 2072, 2490, 2644
HincII	GTYRAC	1 cut(s)	2172
HindII	GTYRAC	1 cut(s)	2172
HpaII	CCGG	1 cut(s)	1883
HphI	GGTGA	9 cut(s)	370, 481, 595, 796, 944, 1450, 1578, 1778, 2529
Hpy166II	GTNNAC	4 cut(s)	1403, 1658, 2172, 2492
Hpy8I	GTNNAC	4 cut(s)	1403, 1658, 2172, 2492
Hpy99I	CGWCG	2 cut(s)	725, 728
HpyAV	CCTTC	9 cut(s)	583, 621, 660, 1222, 1535, 1625, 1763, 2184, 2541
HpyCH4IV	ACGT	4 cut(s)	1434, 1921, 2394, 2625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	328, 1186, 1374, 2039, 2462
HpyF3I	CTNAG	8 cut(s)	123, 450, 1065, 1269, 1452, 1490, 1707, 2043
HpySE526I	ACGT	4 cut(s)	1434, 1921, 2394, 2625
Hsp92II	CATG	8 cut(s)	688, 1342, 1541, 1564, 1859, 2072, 2490, 2644
Ksp22I	TGATCA	1 cut(s)	1459
LmnI	GCTCC	4 cut(s)	152, 328, 1012, 2497
Lsp1109I	GCAGC	4 cut(s)	1164, 1295, 1352, 2470
LweI	GCATC	2 cut(s)	176, 1344
MaeI	CTAG	6 cut(s)	116, 597, 1301, 1874, 2235, 2480
MaeII	ACGT	4 cut(s)	1434, 1921, 2394, 2625
MaeIII	GTNAC	3 cut(s)	947, 1701, 2535
MfeI	CAATTG	1 cut(s)	1946
MflI	RGATCY	6 cut(s)	290, 914, 1673, 1886, 2093, 2206
MhlI	GDGCHC	3 cut(s)	1560, 1903, 2502
MlsI	TGGCCA	1 cut(s)	1979
MluNI	TGGCCA	1 cut(s)	1979
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	2 cut(s)	1840, 2234
Mox20I	TGGCCA	1 cut(s)	1979
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	1979
MseI	TTAA	8 cut(s)	645, 827, 1242, 1389, 1788, 1925, 2027, 2558
MslI	CAYNNNNRTG	1 cut(s)	1542
Msp20I	TGGCCA	1 cut(s)	1979
MspA1I	CMGCKG	1 cut(s)	1177
MspI	CCGG	1 cut(s)	1883
MspR9I	CCNGG	9 cut(s)	46, 1096, 1194, 1688, 1883, 1884, 2204, 2256, 2447
MunI	CAATTG	1 cut(s)	1946
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	7 cut(s)	46, 1096, 1194, 1688, 2204, 2256, 2447
MwoI	GCNNNNNNNGC	5 cut(s)	328, 1186, 1374, 2039, 2462
NciI	CCSGG	2 cut(s)	1883, 1884
NdeI	CATATG	1 cut(s)	676
NlaIII	CATG	8 cut(s)	688, 1342, 1541, 1564, 1859, 2072, 2490, 2644
NlaIV	GGNNCC	6 cut(s)	1119, 1675, 1902, 2208, 2284, 2340
NmuCI	GTSAC	1 cut(s)	2535
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	2 cut(s)	2072, 2490
PaeI	GCATGC	1 cut(s)	2072
PagI	TCATGA	1 cut(s)	1537
PaqCI	CACCTGC	2 cut(s)	1597, 1759
PcsI	WCGNNNNNNNCGW	3 cut(s)	717, 729, 2622
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	9 cut(s)	49, 77, 740, 764, 776, 889, 1016, 1358, 1583
PfoI	TCCNGGA	2 cut(s)	2202, 2445
PkrI	GCNGC	6 cut(s)	822, 1179, 1310, 1367, 2485, 2529
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	2395
PpuMI	RGGWCCY	1 cut(s)	2282
PshBI	ATTAAT	1 cut(s)	2558
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	2282
Psp6I	CCWGG	7 cut(s)	44, 1094, 1192, 1686, 2202, 2254, 2445
PspEI	GGTNACC	1 cut(s)	1701
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	7 cut(s)	44, 1094, 1192, 1686, 2202, 2254, 2445
PspN4I	GGNNCC	6 cut(s)	1119, 1675, 1902, 2208, 2284, 2340
PspPI	GGNCC	2 cut(s)	2282, 2339
PspPPI	RGGWCCY	1 cut(s)	2282
PstNI	CAGNNNCTG	2 cut(s)	1421, 1451
PsuI	RGATCY	6 cut(s)	290, 914, 1673, 1886, 2093, 2206
PvuII	CAGCTG	1 cut(s)	1177
RsaI	GTAC	7 cut(s)	895, 1173, 1528, 1626, 1643, 2017, 2434
RsaNI	GTAC	7 cut(s)	894, 1172, 1527, 1625, 1642, 2016, 2433
RseI	CAYNNNNRTG	1 cut(s)	1542
SaqAI	TTAA	8 cut(s)	645, 827, 1242, 1389, 1788, 1925, 2027, 2558
SatI	GCNGC	6 cut(s)	821, 1178, 1309, 1366, 2484, 2528
Sau96I	GGNCC	2 cut(s)	2282, 2339
ScaI	AGTACT	2 cut(s)	2017, 2434
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	9 cut(s)	46, 1096, 1194, 1688, 1883, 1884, 2204, 2256, 2447
SduI	GDGCHC	3 cut(s)	1560, 1903, 2502
SfaNI	GCATC	2 cut(s)	176, 1344
SinI	GGWCC	2 cut(s)	2282, 2339
SmaI	CCCGGG	1 cut(s)	1884
SmiMI	CAYNNNNRTG	1 cut(s)	1542
SmlI	CTYRAG	2 cut(s)	1678, 1821
SmoI	CTYRAG	2 cut(s)	1678, 1821
SphI	GCATGC	1 cut(s)	2072
SsiI	CCGC	7 cut(s)	410, 521, 820, 1107, 1618, 2528, 2657
SspMI	CTAG	6 cut(s)	116, 597, 1301, 1874, 2235, 2480
StyD4I	CCNGG	9 cut(s)	44, 1094, 1192, 1686, 1881, 1882, 2202, 2254, 2445
StyI	CCWWGG	2 cut(s)	181, 1847
TaiI	ACGT	4 cut(s)	1437, 1924, 2397, 2628
TaqI	TCGA	1 cut(s)	1233
TaqII	GACCGA	1 cut(s)	42
TatI	WGTACW	4 cut(s)	1171, 1526, 2015, 2432
TauI	GCSGC	2 cut(s)	823, 2530
TfiI	GAWTC	9 cut(s)	49, 77, 740, 764, 776, 889, 1016, 1358, 1583
Tru1I	TTAA	8 cut(s)	645, 827, 1242, 1389, 1788, 1925, 2027, 2558
Tru9I	TTAA	8 cut(s)	645, 827, 1242, 1389, 1788, 1925, 2027, 2558
TscAI	CASTG	3 cut(s)	1800, 2479, 2515
TseFI	GTSAC	1 cut(s)	2535
TseI	GCWGC	4 cut(s)	1177, 1308, 1365, 2483
Tsp45I	GTSAC	1 cut(s)	2535
TspGWI	ACGGA	1 cut(s)	2097
TspMI	CCCGGG	1 cut(s)	1882
TspRI	CASTG	3 cut(s)	1800, 2479, 2515
VpaK11BI	GGWCC	2 cut(s)	2282, 2339
VspI	ATTAAT	1 cut(s)	2558
XapI	RAATTY	3 cut(s)	1152, 1257, 1996
XceI	RCATGY	2 cut(s)	2072, 2490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2332
XmaI	CCCGGG	1 cut(s)	1882
XmiI	GTMKAC	1 cut(s)	1657
XspI	CTAG	6 cut(s)	116, 597, 1301, 1874, 2235, 2480
ZrmI	AGTACT	2 cut(s)	2017, 2434
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.