Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Reverse (-)

1144683 .. 1145248

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0014500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATGGTCGGAGAAAAGAAAATATATGCACTCATCGTGGAGGATGACCGAGTCACTCAGATGCGCCACCGTATGCTCCTAAAACGATTCAAATGTGAAAGTCATGTTGCGGGGAATGGAAAGGAAGCAATCGATCTCTTTCGCTCGGGAGCTAGTTTTGATGTTGTTCTCATGGATATGGAGATGCCTGTTATGAATGGACTCGAGGCAACGAAGGAACTACGAGCAATGGGTTTTGAAGGCCTTATTGTTGGTGTCACTTCTCGTGATCTTGATTTTGCAAAACAAGTTTTCAATGAAGCGGGCGCAGATTCTTGTTATGAAAAGCCTCTAACTCCTGAATATGTTACCTCCATTCTTCAAGAAATAAACGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

126

Amino Acids

14.2

Weight (kDa)

4.92

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	11 - 119	8.2e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 302
AgsI	TTSAA	4 cut(s)	91, 239, 295, 362
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Ama87I	CYCGRG	2 cut(s)	145, 203
AoxI	GGCC	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	66, 308
AvaI	CYCGRG	2 cut(s)	145, 203
BauI	CACGAG	1 cut(s)	264
BfaI	CTAG	2 cut(s)	153, 379
BmeT110I	CYCGRG	2 cut(s)	145, 203
BmsI	GCATC	2 cut(s)	51, 174
Bsa29I	ATCGAT	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	132
BsiHKCI	CYCGRG	2 cut(s)	145, 203
BsnI	GGCC	1 cut(s)	243
BsoBI	CYCGRG	2 cut(s)	145, 203
Bsp143I	GATC	2 cut(s)	133, 268
BspACI	CCGC	2 cut(s)	110, 302
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	234
BssMI	GATC	2 cut(s)	133, 268
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	49
BstHHI	GCGC	2 cut(s)	66, 308
BstKTI	GATC	2 cut(s)	136, 271
BstMBI	GATC	2 cut(s)	133, 268
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	2 cut(s)	66, 308
ClaI	ATCGAT	1 cut(s)	132
CviAII	CATG	2 cut(s)	104, 172
CviJI	RGCY	3 cut(s)	152, 243, 328
CviKI_1	RGCY	3 cut(s)	152, 243, 328
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	135, 270
DpnII	GATC	2 cut(s)	133, 268
Eco147I	AGGCCT	1 cut(s)	243
Eco88I	CYCGRG	2 cut(s)	145, 203
FaeI	CATG	2 cut(s)	107, 175
FaiI	YATR	9 cut(s)	25, 27, 74, 105, 173, 179, 194, 321, 345
FatI	CATG	2 cut(s)	103, 171
FauI	CCCGC	2 cut(s)	103, 295
FokI	GGATG	1 cut(s)	56
FspBI	CTAG	2 cut(s)	153, 379
GlaI	GCGC	2 cut(s)	65, 307
HaeIII	GGCC	1 cut(s)	243
HhaI	GCGC	2 cut(s)	66, 308
Hin1II	CATG	2 cut(s)	107, 175
Hin6I	GCGC	2 cut(s)	64, 306
HinP1I	GCGC	2 cut(s)	64, 306
HinfI	GANTC	4 cut(s)	51, 87, 201, 311
Hpy188I	TCNGA	2 cut(s)	11, 60
Hpy188III	TCNNGA	5 cut(s)	147, 266, 272, 338, 362
HpyAV	CCTTC	2 cut(s)	208, 233
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	29, 281
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	107, 175
HspAI	GCGC	2 cut(s)	64, 306
Kzo9I	GATC	2 cut(s)	133, 268
LmnI	GCTCC	2 cut(s)	81, 149
LpnPI	CCDG	2 cut(s)	201, 351
LweI	GCATC	2 cut(s)	51, 174
MaeI	CTAG	2 cut(s)	153, 379
MaeIII	GTNAC	3 cut(s)	52, 256, 346
MalI	GATC	2 cut(s)	135, 270
MboI	GATC	2 cut(s)	133, 268
MboII	GAAGA	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	60, 195
MnlI	CCTC	4 cut(s)	34, 199, 339, 361
MslI	CAYNNNNRTG	2 cut(s)	59, 176
NdeII	GATC	2 cut(s)	133, 268
NlaIII	CATG	2 cut(s)	107, 175
NmuCI	GTSAC	2 cut(s)	52, 256
PaeR7I	CTCGAG	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	87, 311
PflFI	GACNNNGTC	1 cut(s)	50
PleI	GAGTC	2 cut(s)	59, 195
PpsI	GAGTC	2 cut(s)	59, 195
PspXI	VCTCGAGB	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	50
RseI	CAYNNNNRTG	2 cut(s)	59, 176
Sau3AI	GATC	2 cut(s)	133, 268
SchI	GAGTC	2 cut(s)	60, 195
SetI	ASST	2 cut(s)	154, 353
SfaNI	GCATC	2 cut(s)	51, 174
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	59, 176
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	2 cut(s)	110, 302
SspMI	CTAG	2 cut(s)	153, 379
StuI	AGGCCT	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	132, 204
TaqII	GACCGA	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	87, 311
TseFI	GTSAC	2 cut(s)	52, 256
Tsp45I	GTSAC	2 cut(s)	52, 256
TspDTI	ATGAA	3 cut(s)	209, 312, 336
Tth111I	GACNNNGTC	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	203
XspI	CTAG	2 cut(s)	153, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.