Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Reverse (-)

147290 .. 150163

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

atggtaaagggagggaaagttagttccaagcgaagagtcaagccacggattcggtctgattataagggttcagatgattcggatgaagattatgtggtttcagatgaagaaaagctagtttctgaggatttggaggaggattattgctcctctttggatgagaatgcatcagaagagattggtagttttgcaaaggaggaagaggaagagagctgggggagaaagaacagtagatcaagagcgaaaaagggtgttggtagatcaagagcaaaaaagggtattgatagatctattgaggacgaagaggtggaggatgagctggaggaggaggaggaagatgaggaggaaatgaaaaaggtgagaaagaacggtagatcaagagtgaaaaagggtaaagatatatttattgcggatgaggaggaggatgagctggaggagtttggggtggaggaggaagaagaagaagaggaaaaggcaatgaaagaggtgaggaaggtggctagatcacagtcccaaaacggtttctctggaaggctgaaaaatagggttaaaacatcacaaaagaggagaagggctacatatgaagacatggcagatgaggattatgatgatgaagaagatgatgacgacgactacgatgaggaatctgatgaagatgatttttcagaatcggaagaagaatcaagggtgaaaaagaagaaaactaatgtgaaagtgggcaagcggcgtttgaagaaaaaagttcctgtaagaagaaaatcaaagaagcctttgagaaagaaacaaaaaaagaatcgtacattgaggaggaaagtaagatctgatgatgatgatggtgattttatggacagtaacctgcctgtgagagagaagaacaagaaaaaaaggccaaacaaaaggaggagagttgttgctccatccgattcagattttgtgtcttctggatcatctgactgtgattacaccatttctgaggaagagagagagcaagtgagggaagccaggcagttgtgcggaagtttggaacctaatttcagaagctcaatactgcctgacaaaattcaggagaatgagagaaagcctcctggtaggaaaggtaaagaaaaggttgagcaagtgcaggtcgaggtggttaagcaggtctgtggaatttgtctctctgaggaagataagagaagagtcaggggaacactagactgctgcactcattatttttgtttttcctgcatcatggaatggggcaaagtggaatctcgctgcccgttatgcaagcagaggtttaaagcaattagtaaacccacaagagcaggaactgatttgagagacgtggtgataacagtccctgagcgtgatcaggtttatcagccgacagaagaagaactgagaagttatcttgacccttatgagaatgtgatttgtacagaatgtcatgaaggtggagaagatgggctcatgctactgtgtgatgtgtgcgattcacctgctcacacctattgtgttggtcttgggcgggaggtacccgaaggtaattggtactgtaatggttgtagacctgttgctctgggatcctcaagttcccaggttcaaggttggttacctgagcagagaactacaaacaacatcttgcctaatagacaatcacctgctgtaagttttggtgaaggtttagagatagaccttaattcagtgtcctctcctcgtccctatattactcaaggatttgggaactcctcctccccttggtttcatgttggaggttttcaagtagcttccccgggatctggggcaggggcaccaactctgtcaggaagacgtttaatgcaccgtcatattcagcaattgattactgctagtagaatgaattatttggccagtagaaatgagaggaattcatctgctaatttgagtactgatgtcttaaatgctcaaactgctcaggggagggaaacagtagttcagcatacaaggacagacggaatgggcagatctcttcacccattctttggggagagattacaagaaaacccctcactacaagtgcaggataatgatatctttttgtcaacatcaagccatcagagaaggcaagtagtccaggatccaactacaacttctgctgatagacctagcaatggaacattatggcctggacttaccccagagaatacaatatcaggtccccctcacttcagcagtatatccgatggtggtttgtcccccaatacagttatgggaccaagtgattttcacagagcaaaggaacaactgcaatcattggtcataagccacgtaaaaaacttatcccgagatagggatttaggccaaagtactactactttccaggagatcgcaaggagtgctatgcacactgtcctagctgcatgtgaactggagcacacaggcagtgaggtagttcccgtgccgccttcatcaccgtgccctcacattgaattaatggcaggaaagacaagtctgatgagaggttgctgttcatcttgttttgcacagttcgttgaggacgtggtaaagaaggtcatggaatacagactaccgccgtggttgagattagctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

858

Amino Acids

97.09

Weight (kDa)

5.54

Isoelectric Point (pI)

73.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	2 cut(s)	1489, 1651
Acc36I	ACCTGC	5 cut(s)	864, 1111, 1129, 1489, 1651
Acc65I	GGTACC	1 cut(s)	1516
AccB1I	GGYRCC	2 cut(s)	1516, 1792
AccB7I	CCANNNNNTGG	1 cut(s)	2003
AccI	GTMKAC	1 cut(s)	1549
AciI	CCGC	6 cut(s)	410, 724, 1014, 1510, 2423, 2552
AclWI	GGATC	6 cut(s)	952, 1560, 1573, 1786, 2093, 2106
AcoI	YGGCCR	1 cut(s)	1869
AcsI	RAATTY	3 cut(s)	1059, 1149, 1888
AcuI	CTGAAG	1 cut(s)	2173
AfaI	GTAC	6 cut(s)	799, 1420, 1518, 1535, 1909, 2329
AfiI	CCNNNNNNNGG	6 cut(s)	1740, 1781, 2003, 2132, 2310, 2311
AgsI	TTSAA	4 cut(s)	733, 1586, 1763, 2450
AjiI	CACGTC	2 cut(s)	1327, 2521
AjnI	CCWGG	6 cut(s)	1001, 1084, 1578, 2094, 2146, 2340
AjuI	GAANNNNNNNTTGG	2 cut(s)	2095, 2127
AloI	GAACNNNNNNTCC	4 cut(s)	7, 39, 1718, 1750
AluBI	AGCT	8 cut(s)	115, 213, 319, 430, 1041, 1769, 2378, 2570
AluI	AGCT	8 cut(s)	115, 213, 319, 430, 1041, 1769, 2378, 2570
Alw21I	GWGCWC	1 cut(s)	2397
Alw26I	GTCTC	2 cut(s)	1160, 1317
AlwI	GGATC	6 cut(s)	952, 1560, 1573, 1786, 2093, 2106
AlwNI	CAGNNNCTG	2 cut(s)	1313, 1343
Ama87I	CYCGRG	2 cut(s)	1774, 2304
AoxI	GGCC	4 cut(s)	887, 1869, 2144, 2320
ApeKI	GCWGC	3 cut(s)	1200, 1257, 2378
ApoI	RAATTY	3 cut(s)	1059, 1149, 1888
AseI	ATTAAT	1 cut(s)	2453
Asp718I	GGTACC	1 cut(s)	1516
AspS9I	GGNCC	2 cut(s)	2177, 2234
AsuC2I	CCSGG	2 cut(s)	1775, 1776
AvaI	CYCGRG	2 cut(s)	1774, 2304
AvaII	GGWCC	2 cut(s)	2177, 2234
BaeGI	GKGCMC	2 cut(s)	1795, 2441
BalI	TGGCCA	1 cut(s)	1871
BamHI	GGATCC	2 cut(s)	1565, 2098
BanI	GGYRCC	2 cut(s)	1516, 1792
BanII	GRGCYC	1 cut(s)	1452
BbsI	GAAGAC	3 cut(s)	591, 930, 1816
Bbv12I	GWGCWC	1 cut(s)	2397
BbvI	GCAGC	3 cut(s)	1187, 1244, 2365
BccI	CCATC	5 cut(s)	827, 925, 1439, 2082, 2198
BceAI	ACGGC	1 cut(s)	2539
BcgI	CGANNNNNNTGC	2 cut(s)	1463, 1497
BciT130I	CCWGG	6 cut(s)	1003, 1086, 1580, 2096, 2148, 2342
BclI	TGATCA	1 cut(s)	1351
BcnI	CCSGG	2 cut(s)	1775, 1776
BcoDI	GTCTC	2 cut(s)	1160, 1317
BfaI	CTAG	6 cut(s)	116, 501, 1193, 1851, 2127, 2375
BfuAI	ACCTGC	5 cut(s)	864, 1111, 1129, 1489, 1651
BglII	AGATCT	3 cut(s)	287, 818, 1985
BisI	GCNGC	5 cut(s)	725, 1201, 1258, 2379, 2423
BlsI	GCNGC	5 cut(s)	726, 1202, 1259, 2380, 2424
BmcAI	AGTACT	2 cut(s)	1909, 2329
Bme1390I	CCNGG	8 cut(s)	1003, 1086, 1580, 1775, 1776, 2096, 2148, 2342
Bme18I	GGWCC	2 cut(s)	2177, 2234
BmeT110I	CYCGRG	2 cut(s)	1774, 2304
BmgBI	CACGTC	2 cut(s)	1327, 2521
BmgT120I	GGNCC	2 cut(s)	2177, 2234
BmiI	GGNNCC	7 cut(s)	1026, 1518, 1567, 1794, 2100, 2179, 2235
BmrFI	CCNGG	8 cut(s)	1003, 1086, 1580, 1775, 1776, 2096, 2148, 2342
BmsI	GCATC	2 cut(s)	176, 1236
BpiI	GAAGAC	3 cut(s)	591, 930, 1816
BplI	GAGNNNNNCTC	3 cut(s)	1066, 1098, 2554
BpmI	CTGGAG	3 cut(s)	341, 452, 2411
Bpu10I	CCTNAGC	3 cut(s)	1344, 1599, 1935
BpuEI	CTTGAG	2 cut(s)	1555, 1698
BpuMI	CCSGG	2 cut(s)	1775, 1776
BsaAI	YACGTR	1 cut(s)	2290
BsaJI	CCNNGG	6 cut(s)	44, 1578, 1739, 1773, 1774, 2555
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 1718, 1748
Bsc4I	CCNNNNNNNGG	6 cut(s)	1740, 1781, 2003, 2132, 2310, 2311
Bse1I	ACTGG	2 cut(s)	1872, 2394
Bse3DI	GCAATG	2 cut(s)	483, 2137
BseBI	CCWGG	6 cut(s)	1003, 1086, 1580, 2096, 2148, 2342
BseDI	CCNNGG	6 cut(s)	44, 1578, 1739, 1773, 1774, 2555
BseGI	GGATG	6 cut(s)	88, 163, 319, 418, 430, 917
BseLI	CCNNNNNNNGG	6 cut(s)	1740, 1781, 2003, 2132, 2310, 2311
BseMI	GCAATG	2 cut(s)	483, 2137
BseMII	CTCAG	7 cut(s)	114, 963, 1152, 1335, 1373, 1590, 1949
BseNI	ACTGG	2 cut(s)	1872, 2394
BseSI	GKGCMC	2 cut(s)	1795, 2441
BseXI	GCAGC	3 cut(s)	1187, 1244, 2365
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	3 cut(s)	1139, 1186, 2060
BshFI	GGCC	4 cut(s)	889, 1871, 2146, 2322
BshNI	GGYRCC	2 cut(s)	1516, 1792
BsiHKAI	GWGCWC	1 cut(s)	2397
BsiHKCI	CYCGRG	2 cut(s)	1774, 2304
BsiSI	CCGG	1 cut(s)	1775
BslFI	GGGAC	6 cut(s)	496, 1325, 1686, 2163, 2200, 2247
BslI	CCNNNNNNNGG	6 cut(s)	1740, 1781, 2003, 2132, 2310, 2311
BsmAI	GTCTC	2 cut(s)	1160, 1317
BsmBI	CGTCTC	1 cut(s)	1317
BsmFI	GGGAC	6 cut(s)	496, 1325, 1686, 2163, 2200, 2247
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	889, 1871, 2146, 2322
BsoBI	CYCGRG	2 cut(s)	1774, 2304
Bsp1286I	GDGCHC	4 cut(s)	1452, 1795, 2397, 2441
Bsp1407I	TGTACA	1 cut(s)	1418
BspACI	CCGC	6 cut(s)	410, 724, 1014, 1510, 2423, 2552
BspANI	GGCC	4 cut(s)	889, 1871, 2146, 2322
BspCNI	CTCAG	7 cut(s)	115, 964, 1153, 1336, 1374, 1591, 1948
BspHI	TCATGA	1 cut(s)	1429
BspLI	GGNNCC	7 cut(s)	1026, 1518, 1567, 1794, 2100, 2179, 2235
BspMI	ACCTGC	5 cut(s)	864, 1111, 1129, 1489, 1651
BspPI	GGATC	6 cut(s)	952, 1560, 1573, 1786, 2093, 2106
BspT107I	GGYRCC	2 cut(s)	1516, 1792
BsrDI	GCAATG	2 cut(s)	483, 2137
BsrGI	TGTACA	1 cut(s)	1418
BsrI	ACTGG	2 cut(s)	1872, 2394
BssECI	CCNNGG	6 cut(s)	44, 1578, 1739, 1773, 1774, 2555
BssT1I	CCWWGG	1 cut(s)	1739
Bst2UI	CCWGG	6 cut(s)	1003, 1086, 1580, 2096, 2148, 2342
Bst6I	CTCTTC	9 cut(s)	28, 168, 195, 201, 297, 459, 972, 1171, 1995
BstAPI	GCANNNNNTGC	1 cut(s)	2357
BstAUI	TGTACA	1 cut(s)	1418
BstBAI	YACGTR	1 cut(s)	2290
BstC8I	GCNNGC	2 cut(s)	722, 1271
BstDEI	CTNAG	7 cut(s)	123, 972, 1161, 1344, 1382, 1599, 1935
BstDSI	CCRYGG	2 cut(s)	44, 2555
BstEII	GGTNACC	1 cut(s)	1593
BstF5I	GGATG	6 cut(s)	88, 163, 319, 418, 430, 917
BstMAI	GTCTC	2 cut(s)	1160, 1317
BstMWI	GCNNNNNNNGC	3 cut(s)	1266, 1931, 2357
BstNI	CCWGG	6 cut(s)	1003, 1086, 1580, 2096, 2148, 2342
BstNSI	RCATGY	1 cut(s)	2385
BstPI	GGTNACC	1 cut(s)	1593
BstSCI	CCNGG	8 cut(s)	1001, 1084, 1578, 1773, 1774, 2094, 2146, 2340
BstSLI	GKGCMC	2 cut(s)	1795, 2441
BstV1I	GCAGC	3 cut(s)	1187, 1244, 2365
BstV2I	GAAGAC	3 cut(s)	591, 930, 1816
BstX2I	RGATCY	6 cut(s)	287, 818, 1565, 1778, 1985, 2098
BstYI	RGATCY	6 cut(s)	287, 818, 1565, 1778, 1985, 2098
BsuRI	GGCC	4 cut(s)	889, 1871, 2146, 2322
BtgI	CCRYGG	2 cut(s)	44, 2555
BtrI	CACGTC	2 cut(s)	1327, 2521
BtsCI	GGATG	6 cut(s)	88, 163, 319, 418, 430, 917
BtsI	GCAGTG	1 cut(s)	2410
BtsIMutI	CAGTG	3 cut(s)	1692, 2367, 2410
BveI	ACCTGC	5 cut(s)	864, 1111, 1129, 1489, 1651
Cac8I	GCNNGC	2 cut(s)	722, 1271
CaiI	CAGNNNCTG	2 cut(s)	1313, 1343
CciI	TCATGA	1 cut(s)	1429
Cfr13I	GGNCC	2 cut(s)	2177, 2234
Cfr9I	CCCGGG	1 cut(s)	1774
Csp6I	GTAC	6 cut(s)	798, 1419, 1517, 1534, 1908, 2328
CviAII	CATG	7 cut(s)	589, 1231, 1430, 1453, 1748, 2382, 2536
CviQI	GTAC	6 cut(s)	798, 1419, 1517, 1534, 1908, 2328
DdeI	CTNAG	7 cut(s)	123, 972, 1161, 1344, 1382, 1599, 1935
DraI	TTTAAA	1 cut(s)	1282
EaeI	YGGCCR	1 cut(s)	1869
Eam1104I	CTCTTC	9 cut(s)	28, 168, 195, 201, 297, 459, 972, 1171, 1995
EarI	CTCTTC	9 cut(s)	28, 168, 195, 201, 297, 459, 972, 1171, 1995
Eco130I	CCWWGG	1 cut(s)	1739
Eco24I	GRGCYC	1 cut(s)	1452
Eco32I	GATATC	1 cut(s)	2053
Eco47I	GGWCC	2 cut(s)	2177, 2234
Eco57I	CTGAAG	1 cut(s)	2173
Eco88I	CYCGRG	2 cut(s)	1774, 2304
Eco91I	GGTNACC	1 cut(s)	1593
EcoO109I	RGGNCCY	1 cut(s)	2177
EcoO65I	GGTNACC	1 cut(s)	1593
EcoRI	GAATTC	1 cut(s)	1888
EcoRII	CCWGG	6 cut(s)	1001, 1084, 1578, 2094, 2146, 2340
EcoRV	GATATC	1 cut(s)	2053
EcoT14I	CCWWGG	1 cut(s)	1739
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	1452
ErhI	CCWWGG	1 cut(s)	1739
Esp3I	CGTCTC	1 cut(s)	1317
FaeI	CATG	7 cut(s)	592, 1234, 1433, 1456, 1751, 2385, 2539
FaqI	GGGAC	6 cut(s)	496, 1325, 1686, 2163, 2200, 2247
FatI	CATG	7 cut(s)	588, 1230, 1429, 1452, 1747, 2381, 2535
FauI	CCCGC	1 cut(s)	1503
FauNDI	CATATG	1 cut(s)	580
FbaI	TGATCA	1 cut(s)	1351
FblI	GTMKAC	1 cut(s)	1549
Fnu4HI	GCNGC	5 cut(s)	725, 1201, 1258, 2379, 2423
FokI	GGATG	6 cut(s)	95, 170, 326, 425, 437, 904
FriOI	GRGCYC	1 cut(s)	1452
Fsp4HI	GCNGC	5 cut(s)	725, 1201, 1258, 2379, 2423
FspBI	CTAG	6 cut(s)	116, 501, 1193, 1851, 2127, 2375
GluI	GCNGC	5 cut(s)	725, 1201, 1258, 2379, 2423
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	3 cut(s)	341, 452, 2411
HaeIII	GGCC	4 cut(s)	889, 1871, 2146, 2322
HapII	CCGG	1 cut(s)	1775
Hin1II	CATG	7 cut(s)	592, 1234, 1433, 1456, 1751, 2385, 2539
HincII	GTYRAC	1 cut(s)	2064
HindII	GTYRAC	1 cut(s)	2064
HpaII	CCGG	1 cut(s)	1775
Hpy166II	GTNNAC	4 cut(s)	1295, 1550, 2064, 2387
Hpy8I	GTNNAC	4 cut(s)	1295, 1550, 2064, 2387
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	9 cut(s)	487, 525, 564, 1427, 1517, 1655, 2076, 2436, 2524
HpyCH4IV	ACGT	4 cut(s)	1326, 1813, 2289, 2520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1266, 1931, 2357
HpyF3I	CTNAG	7 cut(s)	123, 972, 1161, 1344, 1382, 1599, 1935
HpySE526I	ACGT	4 cut(s)	1326, 1813, 2289, 2520
Hsp92II	CATG	7 cut(s)	592, 1234, 1433, 1456, 1751, 2385, 2539
KpnI	GGTACC	1 cut(s)	1520
Ksp22I	TGATCA	1 cut(s)	1351
LmnI	GCTCC	3 cut(s)	152, 919, 2392
Lsp1109I	GCAGC	3 cut(s)	1187, 1244, 2365
LweI	GCATC	2 cut(s)	176, 1236
MaeI	CTAG	6 cut(s)	116, 501, 1193, 1851, 2127, 2375
MaeII	ACGT	4 cut(s)	1326, 1813, 2289, 2520
MaeIII	GTNAC	2 cut(s)	851, 1593
MfeI	CAATTG	1 cut(s)	1838
MflI	RGATCY	6 cut(s)	287, 818, 1565, 1778, 1985, 2098
MhlI	GDGCHC	4 cut(s)	1452, 1795, 2397, 2441
MlsI	TGGCCA	1 cut(s)	1871
MluNI	TGGCCA	1 cut(s)	1871
MlyI	GAGTC	2 cut(s)	45, 1188
MmeI	TCCRAC	2 cut(s)	1732, 2126
Mox20I	TGGCCA	1 cut(s)	1871
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	1871
MseI	TTAA	7 cut(s)	549, 1134, 1281, 1680, 1817, 1919, 2453
MslI	CAYNNNNRTG	2 cut(s)	1434, 2434
Msp20I	TGGCCA	1 cut(s)	1871
MspI	CCGG	1 cut(s)	1775
MspR9I	CCNGG	8 cut(s)	1003, 1086, 1580, 1775, 1776, 2096, 2148, 2342
MunI	CAATTG	1 cut(s)	1838
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	6 cut(s)	1003, 1086, 1580, 2096, 2148, 2342
MwoI	GCNNNNNNNGC	3 cut(s)	1266, 1931, 2357
NciI	CCSGG	2 cut(s)	1775, 1776
NdeI	CATATG	1 cut(s)	580
NlaIII	CATG	7 cut(s)	592, 1234, 1433, 1456, 1751, 2385, 2539
NlaIV	GGNNCC	7 cut(s)	1026, 1518, 1567, 1794, 2100, 2179, 2235
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	2385
PagI	TCATGA	1 cut(s)	1429
PaqCI	CACCTGC	2 cut(s)	1489, 1651
PcsI	WCGNNNNNNNCGW	2 cut(s)	633, 2517
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	9 cut(s)	49, 77, 644, 668, 680, 793, 923, 1250, 1475
PflMI	CCANNNNNTGG	1 cut(s)	2003
PfoI	TCCNGGA	2 cut(s)	2094, 2340
PkrI	GCNGC	5 cut(s)	726, 1202, 1259, 2380, 2424
PleI	GAGTC	2 cut(s)	44, 1187
PpsI	GAGTC	2 cut(s)	44, 1187
Ppu21I	YACGTR	1 cut(s)	2290
PpuMI	RGGWCCY	1 cut(s)	2177
PshBI	ATTAAT	1 cut(s)	2453
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	2177
Psp6I	CCWGG	6 cut(s)	1001, 1084, 1578, 2094, 2146, 2340
PspEI	GGTNACC	1 cut(s)	1593
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	6 cut(s)	1001, 1084, 1578, 2094, 2146, 2340
PspN4I	GGNNCC	7 cut(s)	1026, 1518, 1567, 1794, 2100, 2179, 2235
PspPI	GGNCC	2 cut(s)	2177, 2234
PspPPI	RGGWCCY	1 cut(s)	2177
PstNI	CAGNNNCTG	2 cut(s)	1313, 1343
PsuI	RGATCY	6 cut(s)	287, 818, 1565, 1778, 1985, 2098
RsaI	GTAC	6 cut(s)	799, 1420, 1518, 1535, 1909, 2329
RsaNI	GTAC	6 cut(s)	798, 1419, 1517, 1534, 1908, 2328
RseI	CAYNNNNRTG	2 cut(s)	1434, 2434
SaqAI	TTAA	7 cut(s)	549, 1134, 1281, 1680, 1817, 1919, 2453
SatI	GCNGC	5 cut(s)	725, 1201, 1258, 2379, 2423
Sau96I	GGNCC	2 cut(s)	2177, 2234
ScaI	AGTACT	2 cut(s)	1909, 2329
SchI	GAGTC	2 cut(s)	45, 1188
ScrFI	CCNGG	8 cut(s)	1003, 1086, 1580, 1775, 1776, 2096, 2148, 2342
SduI	GDGCHC	4 cut(s)	1452, 1795, 2397, 2441
SfaNI	GCATC	2 cut(s)	176, 1236
SinI	GGWCC	2 cut(s)	2177, 2234
SmaI	CCCGGG	1 cut(s)	1776
SmiMI	CAYNNNNRTG	2 cut(s)	1434, 2434
SmlI	CTYRAG	2 cut(s)	1570, 1713
SmoI	CTYRAG	2 cut(s)	1570, 1713
SsiI	CCGC	6 cut(s)	410, 724, 1014, 1510, 2423, 2552
SspMI	CTAG	6 cut(s)	116, 501, 1193, 1851, 2127, 2375
StyD4I	CCNGG	8 cut(s)	1001, 1084, 1578, 1773, 1774, 2094, 2146, 2340
StyI	CCWWGG	1 cut(s)	1739
TaiI	ACGT	4 cut(s)	1329, 1816, 2292, 2523
TaqI	TCGA	1 cut(s)	1125
TaqII	GACCGA	1 cut(s)	42
TatI	WGTACW	3 cut(s)	1418, 1907, 2327
TauI	GCSGC	2 cut(s)	727, 2425
TfiI	GAWTC	9 cut(s)	49, 77, 644, 668, 680, 793, 923, 1250, 1475
Tru1I	TTAA	7 cut(s)	549, 1134, 1281, 1680, 1817, 1919, 2453
Tru9I	TTAA	7 cut(s)	549, 1134, 1281, 1680, 1817, 1919, 2453
TscAI	CASTG	3 cut(s)	1692, 2374, 2410
TseI	GCWGC	3 cut(s)	1200, 1257, 2378
TspGWI	ACGGA	2 cut(s)	61, 1989
TspMI	CCCGGG	1 cut(s)	1774
TspRI	CASTG	3 cut(s)	1692, 2374, 2410
Van91I	CCANNNNNTGG	1 cut(s)	2003
VpaK11BI	GGWCC	2 cut(s)	2177, 2234
VspI	ATTAAT	1 cut(s)	2453
XapI	RAATTY	3 cut(s)	1059, 1149, 1888
XceI	RCATGY	1 cut(s)	2385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2227
XmaI	CCCGGG	1 cut(s)	1774
XmiI	GTMKAC	1 cut(s)	1549
XspI	CTAG	6 cut(s)	116, 501, 1193, 1851, 2127, 2375
ZrmI	AGTACT	2 cut(s)	1909, 2329
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.