Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Forward (+)

6063960 .. 6068952

Gene Structure 4993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG077200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGGTAAAGGGAGGGAAAGTTAGTTCCAAGCGAAGAGTCAAGCCCAGGATTCGGTCTGATTATAAGGGTTCAGATGATTCGGATGAAGATTATGTGATTTCAGATGAAGAAAAGCTAGTTTCTGAGGATTTGGAGGAGGATTATTGCTCCTCTTTGGATGGGAATGCATCAGAAGAGAGCCTTGGTAGTTTTGCAAAGGAGGAAGAGGAAGAGAGCTGGGGGAGAAAGAACAGTAGATCAAGAGCGAAAAAGGGTGTTGGTAGATCAAGAGCAAAAAAGGGTATTGATAGATCTATTGAGGACGAAGAGGTGGAGGATGAGCTGGAGGAGCAGGAGGAGGAGGAGGAAATGAAAAAGGTGAGAAAGAACGGTAGATCAAGAGTGAAAAAGGGTAAAGATATATTTATTGCGGAGGAGGAGGAGGATGAGCTGGAGGAGGAAGAAGAAGAAGAGGAAAAGGCAATGAAAGAGGTGAGGAAGGTGGCTAGATCACAGTCCCAAAACGGTTTCTCTGGAAGGCCGAAAAATAGGGTTAAAACATCACAAAAGAGGAGAAGGGCTACATATGAAGACATGGCAGATGAGGATTATGATGATGACGAAGATGACGACGACGACTACGATGAGGAATCTGATGAAGATGATTTTTCAGAATCGGAAGAAGAATCAAGGGTGAAAAAGAAGAAAACTAATGTGAAAATGGGCAAGCGGCGTTTAAAGAAAAAAGTTCCTGTAAGAAGAAAATCAAAGAAGCCTTTGAGAAAGAAACAAAAAAAGAATCGTACATTGAGGAGGAAAATAAGATCTGATGATGATGATGGTGATTTTATGGACAGTAACCTGCCTGTGAGAGAGAAGAACAAGAAAAAAAGGCCAAACAAAAGGAGATTTGTTGCTCCATCCGATTCAGATTTTGTGTCTTCTGGATCATCTGACTGTGATTACACCATTTCTGAGGAAGAGAGAGAGCAAGTGAGGGAAGCCAGGCAGTTGTGCGGAAGTTTGGAACCTAATTTCAGAAGCTCAATACTGCCTGACAAAATTCAGGAGAATGAGATTGTACAGCTGCCAAGAAAGCCTCCTGGTAGGAAAGGTAAAGAAAAGGTTGAGCAAGTGAAGGTCGAGGTGGTTAAGCAGGTCTGTGGAATTTGTCTCTCTGAGGAAGATAAGAGAAGAGTGAGGGGAACACTAGACTGCTGCACTCATTATTTTTGTTTTTCCTGCATCATGGAATGGGGCAAAGTGGAATCTCGCTGCCCGTTATGCAAGCAGAGGTTTAAAGCAATTAGTAAACCCACAAGAGCAGGAACTGATTTGAGAGACGTGGTGATAACAGTCCCTGAGCGTGATCAGGTTTATCAGCCAACAGAAGAAGAACTGAGAAGTTATCTTGACCCTTATGAGAATGTGATTTGTACAGAATGTCATGAAGGTGGAGAAGATGGGCTCATGCTACTGTGTGATGTGTGCGATTCACCTGCTCACACCTATTGTGTTGGTCTTGGGCGGGAAGTACCCGAAGGTAATTGGTACTGTAATGGTTGTAGACCTGTTGCTCTGGGATCCTCAAGTTCCCAGGTTCAAGGTTGGTTACCTGAGCAGAGAACTACAAACAACATCTTGCCTAATAGACAACCACCTGCTGTAAGTTTTGGTGAAGGTTTGGAGATAGACCTTAATTCAGTGTCCTCTCCTCGTTCCTATATTACTCAAGGATTTGGGAACTCCTCCTCCCCTTGGTTTCATGTTGGAGGTTTTCAACTAGCTTCCCCGGGATCTGGGGCAGGGGCACCAACTCTGTCAGGAAGACGTTTAATGCACCGTCATATTCAGCAATTGATTACTGCTAATAGAATGAATTATTTGGCCAGTAGAAATGAGAGGAATTCATCTGCTAATTTGAGTACTGATGTCTTAAATGCTCAAACTGCTCAGGGGAGGGAAACAGTAGTTCAGCATGCAAGGACAGACGGAATGGACAGATCTTTTCACACATTCTTTGAGGAGAGATTACAAGAAAACCCCTCACTACAAGTGCAGGATAATGATATCTTTTTGTCAACATCAGGCCATCAGAGAAGGCAAGTAGTCCAGGATCCAACTACAACTTCTGCTGATAGACCTAGCAATGGAACATTATGGCCTGGACTTACAGAGAATACAATATCAGGTCCCCCTCACTTCAGCAGTATATCCGATGGTGGTTTGTCCCCCAATACAGTTATGGGACCAAGTGATTTTCACAGAGCAAAGGAACAACTGCAATCATTGGTCATAAGCCACGTAAAAAACTTATCCCGAGATAGGGATTTAGGTATGTGGAGCTTTCAACTGCTATGTAACATCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

783

Amino Acids

89.07

Weight (kDa)

5.59

Isoelectric Point (pI)

72.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	380 - 423	7.7e-07	Ring finger domain
PHD	PF00628	472 - 515	6.2e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	2 cut(s)	1486, 1648
Acc36I	ACCTGC	4 cut(s)	849, 1126, 1486, 1648
AccB1I	GGYRCC	1 cut(s)	1789
AccI	GTMKAC	1 cut(s)	1546
AciI	CCGC	4 cut(s)	410, 709, 996, 1507
AclWI	GGATC	6 cut(s)	934, 1557, 1570, 1783, 2090, 2103
AcoI	YGGCCR	1 cut(s)	1866
AcsI	RAATTY	3 cut(s)	1041, 1146, 1885
AcuI	CTGAAG	1 cut(s)	2167
AfaI	GTAC	6 cut(s)	784, 1062, 1417, 1515, 1532, 1906
AfiI	CCNNNNNNNGG	6 cut(s)	51, 1737, 1778, 2129, 2304, 2305
AgsI	TTSAA	3 cut(s)	1583, 1760, 2330
AjiI	CACGTC	1 cut(s)	1324
AjnI	CCWGG	6 cut(s)	44, 983, 1081, 1575, 2091, 2143
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 2092, 2124
AloI	GAACNNNNNNTCC	4 cut(s)	7, 39, 1715, 1747
AluBI	AGCT	8 cut(s)	115, 216, 322, 430, 1023, 1066, 1766, 2325
AluI	AGCT	8 cut(s)	115, 216, 322, 430, 1023, 1066, 1766, 2325
Alw26I	GTCTC	2 cut(s)	1157, 1314
AlwI	GGATC	6 cut(s)	934, 1557, 1570, 1783, 2090, 2103
AlwNI	CAGNNNCTG	2 cut(s)	1310, 1340
Ama87I	CYCGRG	2 cut(s)	1771, 2298
AoxI	GGCC	5 cut(s)	518, 872, 1866, 2068, 2141
ApeKI	GCWGC	3 cut(s)	1066, 1197, 1254
ApoI	RAATTY	3 cut(s)	1041, 1146, 1885
AspS9I	GGNCC	2 cut(s)	2171, 2228
AsuC2I	CCSGG	2 cut(s)	1772, 1773
AsuHPI	GGTGA	8 cut(s)	370, 484, 685, 833, 1339, 1467, 1667, 2338
AvaI	CYCGRG	2 cut(s)	1771, 2298
AvaII	GGWCC	2 cut(s)	2171, 2228
BaeGI	GKGCMC	1 cut(s)	1792
BalI	TGGCCA	1 cut(s)	1868
BamHI	GGATCC	2 cut(s)	1562, 2095
BanI	GGYRCC	1 cut(s)	1789
BanII	GRGCYC	1 cut(s)	1449
BbsI	GAAGAC	3 cut(s)	576, 912, 1813
BbvI	GCAGC	3 cut(s)	1053, 1184, 1241
BccI	CCATC	6 cut(s)	152, 812, 907, 1436, 2079, 2192
BcgI	CGANNNNNNTGC	2 cut(s)	1460, 1494
BciT130I	CCWGG	6 cut(s)	46, 985, 1083, 1577, 2093, 2145
BclI	TGATCA	1 cut(s)	1348
BcnI	CCSGG	2 cut(s)	1772, 1773
BcoDI	GTCTC	2 cut(s)	1157, 1314
BfaI	CTAG	6 cut(s)	116, 486, 1190, 1763, 2124, 2350
BfuAI	ACCTGC	4 cut(s)	849, 1126, 1486, 1648
BglII	AGATCT	3 cut(s)	290, 803, 1982
BisI	GCNGC	4 cut(s)	710, 1067, 1198, 1255
BlsI	GCNGC	4 cut(s)	711, 1068, 1199, 1256
BmcAI	AGTACT	1 cut(s)	1906
Bme1390I	CCNGG	8 cut(s)	46, 985, 1083, 1577, 1772, 1773, 2093, 2145
Bme18I	GGWCC	2 cut(s)	2171, 2228
BmeT110I	CYCGRG	2 cut(s)	1771, 2298
BmgBI	CACGTC	1 cut(s)	1324
BmgT120I	GGNCC	2 cut(s)	2171, 2228
BmiI	GGNNCC	6 cut(s)	1008, 1564, 1791, 2097, 2173, 2229
BmrFI	CCNGG	8 cut(s)	46, 985, 1083, 1577, 1772, 1773, 2093, 2145
BmsI	GCATC	2 cut(s)	176, 1233
BpiI	GAAGAC	3 cut(s)	576, 912, 1813
BpmI	CTGGAG	2 cut(s)	344, 452
Bpu10I	CCTNAGC	3 cut(s)	1341, 1596, 1932
BpuEI	CTTGAG	2 cut(s)	1552, 1695
BpuMI	CCSGG	2 cut(s)	1772, 1773
BsaAI	YACGTR	1 cut(s)	2284
BsaJI	CCNNGG	6 cut(s)	44, 181, 1575, 1736, 1770, 1771
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 1715, 1745
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 1737, 1778, 2129, 2304, 2305
Bse1I	ACTGG	1 cut(s)	1869
Bse3DI	GCAATG	2 cut(s)	468, 2134
BseBI	CCWGG	6 cut(s)	46, 985, 1083, 1577, 2093, 2145
BseDI	CCNNGG	6 cut(s)	44, 181, 1575, 1736, 1770, 1771
BseGI	GGATG	5 cut(s)	88, 163, 322, 430, 899
BseLI	CCNNNNNNNGG	6 cut(s)	51, 1737, 1778, 2129, 2304, 2305
BseMI	GCAATG	2 cut(s)	468, 2134
BseMII	CTCAG	7 cut(s)	114, 945, 1149, 1332, 1370, 1587, 1946
BseNI	ACTGG	1 cut(s)	1869
BseSI	GKGCMC	1 cut(s)	1792
BseXI	GCAGC	3 cut(s)	1053, 1184, 1241
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	2 cut(s)	1183, 2057
BshFI	GGCC	5 cut(s)	520, 874, 1868, 2070, 2143
BshNI	GGYRCC	1 cut(s)	1789
BsiHKCI	CYCGRG	2 cut(s)	1771, 2298
BsiSI	CCGG	1 cut(s)	1772
BslFI	GGGAC	5 cut(s)	481, 1322, 2157, 2194, 2241
BslI	CCNNNNNNNGG	6 cut(s)	51, 1737, 1778, 2129, 2304, 2305
BsmAI	GTCTC	2 cut(s)	1157, 1314
BsmBI	CGTCTC	1 cut(s)	1314
BsmFI	GGGAC	5 cut(s)	481, 1322, 2157, 2194, 2241
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	520, 874, 1868, 2070, 2143
BsoBI	CYCGRG	2 cut(s)	1771, 2298
Bsp1286I	GDGCHC	2 cut(s)	1449, 1792
Bsp1407I	TGTACA	2 cut(s)	1060, 1415
BspACI	CCGC	4 cut(s)	410, 709, 996, 1507
BspANI	GGCC	5 cut(s)	520, 874, 1868, 2070, 2143
BspCNI	CTCAG	7 cut(s)	115, 946, 1150, 1333, 1371, 1588, 1945
BspHI	TCATGA	1 cut(s)	1426
BspLI	GGNNCC	6 cut(s)	1008, 1564, 1791, 2097, 2173, 2229
BspMI	ACCTGC	4 cut(s)	849, 1126, 1486, 1648
BspPI	GGATC	6 cut(s)	934, 1557, 1570, 1783, 2090, 2103
BspT107I	GGYRCC	1 cut(s)	1789
BsrDI	GCAATG	2 cut(s)	468, 2134
BsrGI	TGTACA	2 cut(s)	1060, 1415
BsrI	ACTGG	1 cut(s)	1869
BssECI	CCNNGG	6 cut(s)	44, 181, 1575, 1736, 1770, 1771
BssT1I	CCWWGG	2 cut(s)	181, 1736
Bst2UI	CCWGG	6 cut(s)	46, 985, 1083, 1577, 2093, 2145
Bst6I	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 444, 954, 1168
BstAUI	TGTACA	2 cut(s)	1060, 1415
BstBAI	YACGTR	1 cut(s)	2284
BstC8I	GCNNGC	3 cut(s)	707, 1268, 1959
BstDEI	CTNAG	7 cut(s)	123, 954, 1158, 1341, 1379, 1596, 1932
BstEII	GGTNACC	1 cut(s)	1590
BstF5I	GGATG	5 cut(s)	88, 163, 322, 430, 899
BstMAI	GTCTC	2 cut(s)	1157, 1314
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 1075, 1263, 1928
BstNI	CCWGG	6 cut(s)	46, 985, 1083, 1577, 2093, 2145
BstNSI	RCATGY	1 cut(s)	1961
BstPI	GGTNACC	1 cut(s)	1590
BstSCI	CCNGG	8 cut(s)	44, 983, 1081, 1575, 1770, 1771, 2091, 2143
BstSLI	GKGCMC	1 cut(s)	1792
BstV1I	GCAGC	3 cut(s)	1053, 1184, 1241
BstV2I	GAAGAC	3 cut(s)	576, 912, 1813
BstX2I	RGATCY	6 cut(s)	290, 803, 1562, 1775, 1982, 2095
BstYI	RGATCY	6 cut(s)	290, 803, 1562, 1775, 1982, 2095
BsuRI	GGCC	5 cut(s)	520, 874, 1868, 2070, 2143
BtrI	CACGTC	1 cut(s)	1324
BtsCI	GGATG	5 cut(s)	88, 163, 322, 430, 899
BtsIMutI	CAGTG	1 cut(s)	1689
BveI	ACCTGC	4 cut(s)	849, 1126, 1486, 1648
Cac8I	GCNNGC	3 cut(s)	707, 1268, 1959
CaiI	CAGNNNCTG	2 cut(s)	1310, 1340
CciI	TCATGA	1 cut(s)	1426
Cfr13I	GGNCC	2 cut(s)	2171, 2228
Cfr9I	CCCGGG	1 cut(s)	1771
Csp6I	GTAC	6 cut(s)	783, 1061, 1416, 1514, 1531, 1905
CviAII	CATG	6 cut(s)	574, 1228, 1427, 1450, 1745, 1958
CviQI	GTAC	6 cut(s)	783, 1061, 1416, 1514, 1531, 1905
DdeI	CTNAG	7 cut(s)	123, 954, 1158, 1341, 1379, 1596, 1932
DraI	TTTAAA	2 cut(s)	717, 1279
EaeI	YGGCCR	1 cut(s)	1866
Eam1104I	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 444, 954, 1168
EarI	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 444, 954, 1168
Eco130I	CCWWGG	2 cut(s)	181, 1736
Eco24I	GRGCYC	1 cut(s)	1449
Eco32I	GATATC	1 cut(s)	2050
Eco47I	GGWCC	2 cut(s)	2171, 2228
Eco57I	CTGAAG	1 cut(s)	2167
Eco88I	CYCGRG	2 cut(s)	1771, 2298
Eco91I	GGTNACC	1 cut(s)	1590
EcoO109I	RGGNCCY	1 cut(s)	2171
EcoO65I	GGTNACC	1 cut(s)	1590
EcoRI	GAATTC	1 cut(s)	1885
EcoRII	CCWGG	6 cut(s)	44, 983, 1081, 1575, 2091, 2143
EcoRV	GATATC	1 cut(s)	2050
EcoT14I	CCWWGG	2 cut(s)	181, 1736
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	1449
ErhI	CCWWGG	2 cut(s)	181, 1736
Esp3I	CGTCTC	1 cut(s)	1314
FaeI	CATG	6 cut(s)	577, 1231, 1430, 1453, 1748, 1961
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	5 cut(s)	481, 1322, 2157, 2194, 2241
FatI	CATG	6 cut(s)	573, 1227, 1426, 1449, 1744, 1957
FauI	CCCGC	1 cut(s)	1500
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	1348
FblI	GTMKAC	1 cut(s)	1546
Fnu4HI	GCNGC	4 cut(s)	710, 1067, 1198, 1255
FokI	GGATG	5 cut(s)	95, 170, 329, 437, 886
FriOI	GRGCYC	1 cut(s)	1449
Fsp4HI	GCNGC	4 cut(s)	710, 1067, 1198, 1255
FspBI	CTAG	6 cut(s)	116, 486, 1190, 1763, 2124, 2350
GluI	GCNGC	4 cut(s)	710, 1067, 1198, 1255
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	2 cut(s)	344, 452
HaeIII	GGCC	5 cut(s)	520, 874, 1868, 2070, 2143
HapII	CCGG	1 cut(s)	1772
Hin1II	CATG	6 cut(s)	577, 1231, 1430, 1453, 1748, 1961
HincII	GTYRAC	1 cut(s)	2061
HindII	GTYRAC	1 cut(s)	2061
HpaII	CCGG	1 cut(s)	1772
HphI	GGTGA	8 cut(s)	370, 484, 685, 833, 1339, 1467, 1667, 2338
Hpy166II	GTNNAC	3 cut(s)	1292, 1547, 2061
Hpy8I	GTNNAC	3 cut(s)	1292, 1547, 2061
Hpy99I	CGWCG	2 cut(s)	614, 617
HpyAV	CCTTC	8 cut(s)	472, 510, 549, 1111, 1424, 1514, 1652, 2073
HpyCH4IV	ACGT	3 cut(s)	1323, 1810, 2283
HpyCH4V	TGCA	9 cut(s)	167, 194, 1200, 1224, 1266, 1819, 1961, 2038, 2263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 1075, 1263, 1928
HpyF3I	CTNAG	7 cut(s)	123, 954, 1158, 1341, 1379, 1596, 1932
HpySE526I	ACGT	3 cut(s)	1323, 1810, 2283
Hsp92II	CATG	6 cut(s)	577, 1231, 1430, 1453, 1748, 1961
Ksp22I	TGATCA	1 cut(s)	1348
LmnI	GCTCC	4 cut(s)	152, 328, 901, 2322
Lsp1109I	GCAGC	3 cut(s)	1053, 1184, 1241
LweI	GCATC	2 cut(s)	176, 1233
MaeI	CTAG	6 cut(s)	116, 486, 1190, 1763, 2124, 2350
MaeII	ACGT	3 cut(s)	1323, 1810, 2283
MaeIII	GTNAC	3 cut(s)	836, 1590, 2339
MfeI	CAATTG	1 cut(s)	1835
MflI	RGATCY	6 cut(s)	290, 803, 1562, 1775, 1982, 2095
MhlI	GDGCHC	2 cut(s)	1449, 1792
MlsI	TGGCCA	1 cut(s)	1868
MluNI	TGGCCA	1 cut(s)	1868
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	2 cut(s)	1729, 2123
Mox20I	TGGCCA	1 cut(s)	1868
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	1868
MseI	TTAA	7 cut(s)	534, 716, 1131, 1278, 1677, 1814, 1916
MslI	CAYNNNNRTG	1 cut(s)	1431
Msp20I	TGGCCA	1 cut(s)	1868
MspA1I	CMGCKG	1 cut(s)	1066
MspI	CCGG	1 cut(s)	1772
MspR9I	CCNGG	8 cut(s)	46, 985, 1083, 1577, 1772, 1773, 2093, 2145
MunI	CAATTG	1 cut(s)	1835
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	6 cut(s)	46, 985, 1083, 1577, 2093, 2145
MwoI	GCNNNNNNNGC	4 cut(s)	328, 1075, 1263, 1928
NciI	CCSGG	2 cut(s)	1772, 1773
NdeI	CATATG	1 cut(s)	565
NlaIII	CATG	6 cut(s)	577, 1231, 1430, 1453, 1748, 1961
NlaIV	GGNNCC	6 cut(s)	1008, 1564, 1791, 2097, 2173, 2229
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	1961
PaeI	GCATGC	1 cut(s)	1961
PagI	TCATGA	1 cut(s)	1426
PaqCI	CACCTGC	2 cut(s)	1486, 1648
PcsI	WCGNNNNNNNCGW	2 cut(s)	606, 618
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	9 cut(s)	49, 77, 629, 653, 665, 778, 905, 1247, 1472
PfoI	TCCNGGA	1 cut(s)	2091
PkrI	GCNGC	4 cut(s)	711, 1068, 1199, 1256
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	2284
PpuMI	RGGWCCY	1 cut(s)	2171
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	2171
Psp6I	CCWGG	6 cut(s)	44, 983, 1081, 1575, 2091, 2143
PspEI	GGTNACC	1 cut(s)	1590
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	6 cut(s)	44, 983, 1081, 1575, 2091, 2143
PspN4I	GGNNCC	6 cut(s)	1008, 1564, 1791, 2097, 2173, 2229
PspPI	GGNCC	2 cut(s)	2171, 2228
PspPPI	RGGWCCY	1 cut(s)	2171
PstNI	CAGNNNCTG	2 cut(s)	1310, 1340
PsuI	RGATCY	6 cut(s)	290, 803, 1562, 1775, 1982, 2095
PvuII	CAGCTG	1 cut(s)	1066
RsaI	GTAC	6 cut(s)	784, 1062, 1417, 1515, 1532, 1906
RsaNI	GTAC	6 cut(s)	783, 1061, 1416, 1514, 1531, 1905
RseI	CAYNNNNRTG	1 cut(s)	1431
SaqAI	TTAA	7 cut(s)	534, 716, 1131, 1278, 1677, 1814, 1916
SatI	GCNGC	4 cut(s)	710, 1067, 1198, 1255
Sau96I	GGNCC	2 cut(s)	2171, 2228
ScaI	AGTACT	1 cut(s)	1906
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	8 cut(s)	46, 985, 1083, 1577, 1772, 1773, 2093, 2145
SduI	GDGCHC	2 cut(s)	1449, 1792
SfaNI	GCATC	2 cut(s)	176, 1233
SinI	GGWCC	2 cut(s)	2171, 2228
SmaI	CCCGGG	1 cut(s)	1773
SmiMI	CAYNNNNRTG	1 cut(s)	1431
SmlI	CTYRAG	2 cut(s)	1567, 1710
SmoI	CTYRAG	2 cut(s)	1567, 1710
SphI	GCATGC	1 cut(s)	1961
SsiI	CCGC	4 cut(s)	410, 709, 996, 1507
SspMI	CTAG	6 cut(s)	116, 486, 1190, 1763, 2124, 2350
StyD4I	CCNGG	8 cut(s)	44, 983, 1081, 1575, 1770, 1771, 2091, 2143
StyI	CCWWGG	2 cut(s)	181, 1736
TaiI	ACGT	3 cut(s)	1326, 1813, 2286
TaqI	TCGA	1 cut(s)	1122
TaqII	GACCGA	1 cut(s)	42
TatI	WGTACW	3 cut(s)	1060, 1415, 1904
TauI	GCSGC	1 cut(s)	712
TfiI	GAWTC	9 cut(s)	49, 77, 629, 653, 665, 778, 905, 1247, 1472
Tru1I	TTAA	7 cut(s)	534, 716, 1131, 1278, 1677, 1814, 1916
Tru9I	TTAA	7 cut(s)	534, 716, 1131, 1278, 1677, 1814, 1916
TscAI	CASTG	1 cut(s)	1689
TseI	GCWGC	3 cut(s)	1066, 1197, 1254
TspGWI	ACGGA	1 cut(s)	1986
TspMI	CCCGGG	1 cut(s)	1771
TspRI	CASTG	1 cut(s)	1689
VpaK11BI	GGWCC	2 cut(s)	2171, 2228
XapI	RAATTY	3 cut(s)	1041, 1146, 1885
XceI	RCATGY	1 cut(s)	1961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2221
XmaI	CCCGGG	1 cut(s)	1771
XmiI	GTMKAC	1 cut(s)	1546
XspI	CTAG	6 cut(s)	116, 486, 1190, 1763, 2124, 2350
ZrmI	AGTACT	1 cut(s)	1906
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.