Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Reverse (-)

43601250 .. 43604156

Gene Structure 2907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGGTAAAGGGAGGGAAAGTTGGTTCCAAGCGAAGAGTCAAGCCACGGATTCGGTCTGATTATAAGGGTTCAGATGATTCGGATGAAGATTATGTGATTTCAGATGAAGAAAAGCTAGTTTCTGAGGATTTGGAGGAGGATTATTGCTCCTCTTTGGATGGGAATGCATCAGAAGAGAGCTTTGGTAGTTTTGCAGAGGAGGAGGAGGAAGAGGAAGAGGAAGTGAGATGGGCGAGAAAGAACAGTAGATCAAGAGCAAAAAAGGGTGTTGGTAGATCAAGAGCAAAAAAGGGTATTGATAGATCTATTGTGGACGAAGAGGAGGAGGATGAGTTGGAGGAGCAGGAGGAGGAGGAGGAGGAGGAAGATGAAGAGGAAATGAAAAAGTTGAGAAAGAATGGTAGATCAAGAGCGAAAAAGGGTAAAGATATATTTGTTGCAGACGAGGAGGAGGATGAGCTGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAAGAGGCAATGAAAGAGGTGAGGAAGGTCGCTAGATCAAAGTCCCAAAATGGTTTCTCTGGAAGGCAGAAAAATAGGGTTAAAACATCACAAAAGAGGAGAAGGGCTACATATGAAGAAATGGCAGATCAGGATTATGATGATGAAGAAGATGACGACGACGACTACGATGAGGAATTTACACCCGATGAAGATGATTTTTCAGAATTGGAAGAAGAATCAAGGGTGAAAAAGAAGAAAACTAATGTGAAAGTGGGCAAGCGGCGTTTGAAGAAAAAAGTTCCTATAAGAAGAAAATCAAAGAAGCCTTTGAGAAAGAAACCAAAAAAGAATCGTACATTGAGGAGGAAAGTAAGATCTGATGATGATGATGGTGATTTTATGGACAGTAACCTGCCTGTTAGAGAGAAAAACAAGAAAAAAAGGCCAAACAAAAGGAGGAGATTTGCTCCATCCGATTCAGATTTTGTGTCTTCTGGATCATCTGACTGTGATTACACCATTTCTGAGGAAGAGAGAGAGCAAGTGAGGGAAGCCATGCAGTTGTGCGGAAGTTTGGAACCTAATTTCAGAAGCTCAATACTGCCTGACAAAAGTCAGGAGAATGGGATTGTACAGCTGCCAAGAAAGCCTCCTGGTAGGAAAGGTAAAGAAAAGGTTGAGCAAGTGAAGGTCGAGGTGGTTAAGCAGGTCTGTGGAATTTGTCTCTCTGAGGAAGATAAGAGAAGAGTGAGGGGAACACTAGACTGCTGCACTCATTATTTTTGTTTTTCCTGCATCATGGAATGGGGCAAAGTGGAATCTCGCTGCCCGTTATGCAAGCAGAGGTTTAAAGCAATTACTAAACCCACAAGAGCAGGAACTGATTTGAGAGACGTGGTGATAACAGTCCCTGAGCGTGATCAGGTTTATCAGCCGACAGAAGAAGAACTGAGAAGTTATCTTGACCCTTATGAGAATGTGATTTGTACAGAATGTCATGAAGGTGGGGATGATGGGCTCATGCTACTGTGTGATGTGTGCGATTCACCTGCTCACACCTATTGTGTTGGTCTTGGGCGGGAAGTACCCGAAGGTAATTGGTACTGTGATGGTTGTAGACCTGTTGCTTTGGGATCCTCAAGTTCCCAGGTTCAAGGTTGGTTAACTGAGCAGAGAACTACAAACAACATCTTGCCTAATAGACAATCACCGGCTGTAAGTTTTGGTGAAGGTTTAGAGATAGACCTTAATTCAGTGTCCTCTCCTCGTTCCTATATTACTCAAGGATTTGGGAACTCCTCCTCCCCTTGGTTTCATGTTGGAGGTTTTCAAGTAGCTTCCCCGGGATCTGGGGCAGGGGCACCAACTCTGTCAGGAAGACGTTTAATGCACCGTCACATTCAGCAATTGATTACTGCTAATAGAATGAATTATTTGGCCAGTAGAAATGAGAGGAATTCATCTGCTAATTTGAGTACTGATGTCTTAAATGCTCAAACTGCTCGGGGGAGGGAAACAGTAGTTCAGCATACAAGGACAGACGGAATGGACAGATCTTTTCACACATACGTTGAGGAGAGATTACAAGAAAACCCCTCACTACAAGTGCAGGATAATGATATCTTTTTGTCAACATCAAGCCATCAGAGAAGGCAAGTAGTCCAGGATCCCACTACAACTTCTGCTGATAGACCTAGCAATGGAACATTATGGCCTGGACTTACAGAGAATACAATATCAGGTCCCCCTCACTTCAGCAGTATATCCCATGGTGGTGTGTCCCCCAATACAGTTATGGGACCAAGTGATTTTCAGAGAGCAAAGGAACAACTGCAATCATTGGTCATAAGCCACGTAAAAAACTTATCCCGAGATAGGGATTTAGGCCAAAGTACTACAACTTTCCAGGAGATCGCAAGGAGTGCCATGCACACCGTCCTAGCTGCATGTGAACTGGAGCACACAGGCAGTGAGGTAGTTCCCGTGCCGCCTTCGTCACCCTGCCCTCACATTGAATTAATGGCGGGAAAGACAAGTCTGATGAGAGGTTGCTGTTCATCTTGTTTTGCACAGTTCGTTGAGGACGTGGTAAAGAGGGTCATGGAATACAAACTACCGCCGTGGTTGAGATTAGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

871

Amino Acids

98.77

Weight (kDa)

5.34

Isoelectric Point (pI)

75.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	394 - 437	8.7e-07	Ring finger domain
PHD	PF00628	486 - 529	1.1e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	1 cut(s)	1528
Acc36I	ACCTGC	3 cut(s)	891, 1168, 1528
AccB1I	GGYRCC	1 cut(s)	1831
AccI	GTMKAC	1 cut(s)	1588
AciI	CCGC	6 cut(s)	751, 1038, 1549, 2459, 2495, 2588
AclWI	GGATC	6 cut(s)	976, 1599, 1612, 1825, 2132, 2145
AcoI	YGGCCR	1 cut(s)	1908
AcsI	RAATTY	3 cut(s)	665, 1188, 1927
AcuI	CTGAAG	1 cut(s)	2209
AfaI	GTAC	7 cut(s)	826, 1104, 1459, 1557, 1574, 1948, 2365
AfiI	CCNNNNNNNGG	5 cut(s)	1779, 1820, 2171, 2346, 2347
AgsI	TTSAA	4 cut(s)	760, 1625, 1802, 2486
AjiI	CACGTC	2 cut(s)	1366, 2557
AjnI	CCWGG	5 cut(s)	1123, 1617, 2133, 2185, 2376
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AloI	GAACNNNNNNTCC	4 cut(s)	7, 39, 1757, 1789
AluBI	AGCT	8 cut(s)	115, 180, 460, 1065, 1108, 1808, 2414, 2606
AluI	AGCT	8 cut(s)	115, 180, 460, 1065, 1108, 1808, 2414, 2606
Alw21I	GWGCWC	1 cut(s)	2433
Alw26I	GTCTC	2 cut(s)	1199, 1356
AlwI	GGATC	6 cut(s)	976, 1599, 1612, 1825, 2132, 2145
AlwNI	CAGNNNCTG	2 cut(s)	1352, 1382
Ama87I	CYCGRG	3 cut(s)	1813, 1974, 2340
AoxI	GGCC	4 cut(s)	914, 1908, 2183, 2356
ApeKI	GCWGC	4 cut(s)	1108, 1239, 1296, 2414
ApoI	RAATTY	3 cut(s)	665, 1188, 1927
AseI	ATTAAT	1 cut(s)	2489
AspS9I	GGNCC	2 cut(s)	2213, 2270
AsuC2I	CCSGG	2 cut(s)	1814, 1815
AsuHPI	GGTGA	8 cut(s)	520, 727, 875, 1381, 1509, 1671, 1709, 2460
AvaI	CYCGRG	3 cut(s)	1813, 1974, 2340
AvaII	GGWCC	2 cut(s)	2213, 2270
BaeGI	GKGCMC	1 cut(s)	1834
BalI	TGGCCA	1 cut(s)	1910
BamHI	GGATCC	2 cut(s)	1604, 2137
BanI	GGYRCC	1 cut(s)	1831
BanII	GRGCYC	1 cut(s)	1491
BbsI	GAAGAC	2 cut(s)	954, 1855
Bbv12I	GWGCWC	1 cut(s)	2433
BbvI	GCAGC	4 cut(s)	1095, 1226, 1283, 2401
BccI	CCATC	7 cut(s)	152, 222, 854, 949, 1478, 1574, 2121
BceAI	ACGGC	1 cut(s)	2575
BcgI	CGANNNNNNTGC	2 cut(s)	1502, 1536
BciT130I	CCWGG	5 cut(s)	1125, 1619, 2135, 2187, 2378
BclI	TGATCA	1 cut(s)	1390
BcnI	CCSGG	2 cut(s)	1814, 1815
BcoDI	GTCTC	2 cut(s)	1199, 1356
BfaI	CTAG	5 cut(s)	116, 522, 1232, 2166, 2411
BfuAI	ACCTGC	3 cut(s)	891, 1168, 1528
BglII	AGATCT	3 cut(s)	302, 845, 2024
BisI	GCNGC	6 cut(s)	752, 1109, 1240, 1297, 2415, 2459
BlsI	GCNGC	6 cut(s)	753, 1110, 1241, 1298, 2416, 2460
BmcAI	AGTACT	2 cut(s)	1948, 2365
Bme1390I	CCNGG	7 cut(s)	1125, 1619, 1814, 1815, 2135, 2187, 2378
Bme18I	GGWCC	2 cut(s)	2213, 2270
BmeT110I	CYCGRG	3 cut(s)	1813, 1974, 2340
BmgBI	CACGTC	2 cut(s)	1366, 2557
BmgT120I	GGNCC	2 cut(s)	2213, 2270
BmiI	GGNNCC	7 cut(s)	25, 1050, 1606, 1833, 2139, 2215, 2271
BmrFI	CCNGG	7 cut(s)	1125, 1619, 1814, 1815, 2135, 2187, 2378
BmsI	GCATC	2 cut(s)	176, 1275
BoxI	GACNNNNGTC	1 cut(s)	1083
BpiI	GAAGAC	2 cut(s)	954, 1855
BplI	GAGNNNNNCTC	3 cut(s)	922, 954, 2590
BpmI	CTGGAG	2 cut(s)	482, 2447
Bpu10I	CCTNAGC	1 cut(s)	1383
BpuEI	CTTGAG	2 cut(s)	1594, 1737
BpuMI	CCSGG	2 cut(s)	1814, 1815
BsaAI	YACGTR	1 cut(s)	2326
BsaJI	CCNNGG	7 cut(s)	44, 1617, 1778, 1812, 1813, 2239, 2591
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 317, 347, 1757, 1787
Bsc4I	CCNNNNNNNGG	5 cut(s)	1779, 1820, 2171, 2346, 2347
Bse118I	RCCGGY	1 cut(s)	1681
Bse1I	ACTGG	2 cut(s)	1911, 2430
Bse3DI	GCAATG	2 cut(s)	504, 2176
BseBI	CCWGG	5 cut(s)	1125, 1619, 2135, 2187, 2378
BseDI	CCNNGG	7 cut(s)	44, 1617, 1778, 1812, 1813, 2239, 2591
BseGI	GGATG	6 cut(s)	88, 163, 334, 460, 941, 1486
BseLI	CCNNNNNNNGG	5 cut(s)	1779, 1820, 2171, 2346, 2347
BseMI	GCAATG	2 cut(s)	504, 2176
BseMII	CTCAG	6 cut(s)	114, 987, 1191, 1374, 1412, 1629
BseNI	ACTGG	2 cut(s)	1911, 2430
BseSI	GKGCMC	1 cut(s)	1834
BseXI	GCAGC	4 cut(s)	1095, 1226, 1283, 2401
BsgI	GTGCAG	2 cut(s)	1225, 2099
BshFI	GGCC	4 cut(s)	916, 1910, 2185, 2358
BshNI	GGYRCC	1 cut(s)	1831
BsiHKAI	GWGCWC	1 cut(s)	2433
BsiHKCI	CYCGRG	3 cut(s)	1813, 1974, 2340
BsiSI	CCGG	2 cut(s)	1682, 1814
BslFI	GGGAC	5 cut(s)	517, 1364, 2199, 2236, 2283
BslI	CCNNNNNNNGG	5 cut(s)	1779, 1820, 2171, 2346, 2347
BsmAI	GTCTC	2 cut(s)	1199, 1356
BsmBI	CGTCTC	1 cut(s)	1356
BsmFI	GGGAC	5 cut(s)	517, 1364, 2199, 2236, 2283
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	916, 1910, 2185, 2358
BsoBI	CYCGRG	3 cut(s)	1813, 1974, 2340
Bsp1286I	GDGCHC	3 cut(s)	1491, 1834, 2433
Bsp1407I	TGTACA	2 cut(s)	1102, 1457
Bsp19I	CCATGG	1 cut(s)	2239
BspACI	CCGC	6 cut(s)	751, 1038, 1549, 2459, 2495, 2588
BspANI	GGCC	4 cut(s)	916, 1910, 2185, 2358
BspCNI	CTCAG	6 cut(s)	115, 988, 1192, 1375, 1413, 1630
BspHI	TCATGA	1 cut(s)	1468
BspLI	GGNNCC	7 cut(s)	25, 1050, 1606, 1833, 2139, 2215, 2271
BspMI	ACCTGC	3 cut(s)	891, 1168, 1528
BspPI	GGATC	6 cut(s)	976, 1599, 1612, 1825, 2132, 2145
BspT107I	GGYRCC	1 cut(s)	1831
BsrDI	GCAATG	2 cut(s)	504, 2176
BsrFI	RCCGGY	1 cut(s)	1681
BsrGI	TGTACA	2 cut(s)	1102, 1457
BsrI	ACTGG	2 cut(s)	1911, 2430
BssAI	RCCGGY	1 cut(s)	1681
BssECI	CCNNGG	7 cut(s)	44, 1617, 1778, 1812, 1813, 2239, 2591
BssT1I	CCWWGG	2 cut(s)	1778, 2239
Bst2UI	CCWGG	5 cut(s)	1125, 1619, 2135, 2187, 2378
BstAPI	GCANNNNNTGC	1 cut(s)	2393
BstAUI	TGTACA	2 cut(s)	1102, 1457
BstBAI	YACGTR	1 cut(s)	2326
BstC8I	GCNNGC	2 cut(s)	749, 1310
BstDEI	CTNAG	6 cut(s)	123, 996, 1200, 1383, 1421, 1638
BstDSI	CCRYGG	3 cut(s)	44, 2239, 2591
BstF5I	GGATG	6 cut(s)	88, 163, 334, 460, 941, 1486
BstMAI	GTCTC	2 cut(s)	1199, 1356
BstMWI	GCNNNNNNNGC	4 cut(s)	1117, 1305, 1970, 2393
BstNI	CCWGG	5 cut(s)	1125, 1619, 2135, 2187, 2378
BstNSI	RCATGY	1 cut(s)	2421
BstPAI	GACNNNNGTC	1 cut(s)	1083
BstSCI	CCNGG	7 cut(s)	1123, 1617, 1812, 1813, 2133, 2185, 2376
BstSLI	GKGCMC	1 cut(s)	1834
BstV1I	GCAGC	4 cut(s)	1095, 1226, 1283, 2401
BstV2I	GAAGAC	2 cut(s)	954, 1855
BstX2I	RGATCY	6 cut(s)	302, 845, 1604, 1817, 2024, 2137
BstYI	RGATCY	6 cut(s)	302, 845, 1604, 1817, 2024, 2137
BsuRI	GGCC	4 cut(s)	916, 1910, 2185, 2358
BtgI	CCRYGG	3 cut(s)	44, 2239, 2591
BtrI	CACGTC	2 cut(s)	1366, 2557
BtsCI	GGATG	6 cut(s)	88, 163, 334, 460, 941, 1486
BtsI	GCAGTG	1 cut(s)	2446
BtsIMutI	CAGTG	2 cut(s)	1731, 2446
BveI	ACCTGC	3 cut(s)	891, 1168, 1528
Cac8I	GCNNGC	2 cut(s)	749, 1310
CaiI	CAGNNNCTG	2 cut(s)	1352, 1382
CciI	TCATGA	1 cut(s)	1468
Cfr10I	RCCGGY	1 cut(s)	1681
Cfr13I	GGNCC	2 cut(s)	2213, 2270
Cfr9I	CCCGGG	1 cut(s)	1813
Csp6I	GTAC	7 cut(s)	825, 1103, 1458, 1556, 1573, 1947, 2364
CviAII	CATG	9 cut(s)	1027, 1270, 1469, 1492, 1787, 2240, 2398, 2418, 2572
CviQI	GTAC	7 cut(s)	825, 1103, 1458, 1556, 1573, 1947, 2364
DdeI	CTNAG	6 cut(s)	123, 996, 1200, 1383, 1421, 1638
DraI	TTTAAA	1 cut(s)	1321
EaeI	YGGCCR	1 cut(s)	1908
Eco130I	CCWWGG	2 cut(s)	1778, 2239
Eco24I	GRGCYC	1 cut(s)	1491
Eco32I	GATATC	1 cut(s)	2092
Eco47I	GGWCC	2 cut(s)	2213, 2270
Eco57I	CTGAAG	1 cut(s)	2209
Eco88I	CYCGRG	3 cut(s)	1813, 1974, 2340
EcoO109I	RGGNCCY	1 cut(s)	2213
EcoRI	GAATTC	1 cut(s)	1927
EcoRII	CCWGG	5 cut(s)	1123, 1617, 2133, 2185, 2376
EcoRV	GATATC	1 cut(s)	2092
EcoT14I	CCWWGG	2 cut(s)	1778, 2239
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	1491
ErhI	CCWWGG	2 cut(s)	1778, 2239
Esp3I	CGTCTC	1 cut(s)	1356
FaeI	CATG	9 cut(s)	1030, 1273, 1472, 1495, 1790, 2243, 2401, 2421, 2575
FaqI	GGGAC	5 cut(s)	517, 1364, 2199, 2236, 2283
FatI	CATG	9 cut(s)	1026, 1269, 1468, 1491, 1786, 2239, 2397, 2417, 2571
FauI	CCCGC	2 cut(s)	1542, 2488
FauNDI	CATATG	1 cut(s)	601
FbaI	TGATCA	1 cut(s)	1390
FblI	GTMKAC	1 cut(s)	1588
Fnu4HI	GCNGC	6 cut(s)	752, 1109, 1240, 1297, 2415, 2459
FokI	GGATG	6 cut(s)	95, 170, 341, 467, 928, 1493
FriOI	GRGCYC	1 cut(s)	1491
Fsp4HI	GCNGC	6 cut(s)	752, 1109, 1240, 1297, 2415, 2459
FspBI	CTAG	5 cut(s)	116, 522, 1232, 2166, 2411
GluI	GCNGC	6 cut(s)	752, 1109, 1240, 1297, 2415, 2459
GsuI	CTGGAG	2 cut(s)	482, 2447
HaeIII	GGCC	4 cut(s)	916, 1910, 2185, 2358
HapII	CCGG	2 cut(s)	1682, 1814
Hin1II	CATG	9 cut(s)	1030, 1273, 1472, 1495, 1790, 2243, 2401, 2421, 2575
HincII	GTYRAC	2 cut(s)	1635, 2103
HindII	GTYRAC	2 cut(s)	1635, 2103
HinfI	GANTC	8 cut(s)	36, 49, 77, 707, 820, 947, 1289, 1514
HpaI	GTTAAC	1 cut(s)	1635
HpaII	CCGG	2 cut(s)	1682, 1814
HphI	GGTGA	8 cut(s)	520, 727, 875, 1381, 1509, 1671, 1709, 2460
Hpy166II	GTNNAC	5 cut(s)	313, 1589, 1635, 2103, 2423
Hpy8I	GTNNAC	5 cut(s)	313, 1589, 1635, 2103, 2423
Hpy99I	CGWCG	2 cut(s)	650, 653
HpyAV	CCTTC	9 cut(s)	508, 546, 585, 1153, 1466, 1556, 1694, 2115, 2472
HpyCH4IV	ACGT	5 cut(s)	1365, 1852, 2040, 2325, 2556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1117, 1305, 1970, 2393
HpyF3I	CTNAG	6 cut(s)	123, 996, 1200, 1383, 1421, 1638
HpySE526I	ACGT	5 cut(s)	1365, 1852, 2040, 2325, 2556
Hsp92II	CATG	9 cut(s)	1030, 1273, 1472, 1495, 1790, 2243, 2401, 2421, 2575
Ksp22I	TGATCA	1 cut(s)	1390
KspAI	GTTAAC	1 cut(s)	1635
LmnI	GCTCC	4 cut(s)	152, 340, 943, 2428
Lsp1109I	GCAGC	4 cut(s)	1095, 1226, 1283, 2401
LweI	GCATC	2 cut(s)	176, 1275
MaeI	CTAG	5 cut(s)	116, 522, 1232, 2166, 2411
MaeII	ACGT	5 cut(s)	1365, 1852, 2040, 2325, 2556
MaeIII	GTNAC	3 cut(s)	878, 1865, 2466
MfeI	CAATTG	1 cut(s)	1877
MflI	RGATCY	6 cut(s)	302, 845, 1604, 1817, 2024, 2137
MhlI	GDGCHC	3 cut(s)	1491, 1834, 2433
MlsI	TGGCCA	1 cut(s)	1910
MluNI	TGGCCA	1 cut(s)	1910
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	2 cut(s)	315, 1771
Mox20I	TGGCCA	1 cut(s)	1910
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	1910
MseI	TTAA	8 cut(s)	570, 1173, 1320, 1634, 1719, 1856, 1958, 2489
MslI	CAYNNNNRTG	2 cut(s)	1473, 2244
Msp20I	TGGCCA	1 cut(s)	1910
MspA1I	CMGCKG	1 cut(s)	1108
MspI	CCGG	2 cut(s)	1682, 1814
MspR9I	CCNGG	7 cut(s)	1125, 1619, 1814, 1815, 2135, 2187, 2378
MunI	CAATTG	1 cut(s)	1877
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	5 cut(s)	1125, 1619, 2135, 2187, 2378
MwoI	GCNNNNNNNGC	4 cut(s)	1117, 1305, 1970, 2393
NciI	CCSGG	2 cut(s)	1814, 1815
NcoI	CCATGG	1 cut(s)	2239
NdeI	CATATG	1 cut(s)	601
NlaIII	CATG	9 cut(s)	1030, 1273, 1472, 1495, 1790, 2243, 2401, 2421, 2575
NlaIV	GGNNCC	7 cut(s)	25, 1050, 1606, 1833, 2139, 2215, 2271
NmuCI	GTSAC	2 cut(s)	1865, 2466
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	2421
PagI	TCATGA	1 cut(s)	1468
PaqCI	CACCTGC	1 cut(s)	1528
PcsI	WCGNNNNNNNCGW	2 cut(s)	654, 2553
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	7 cut(s)	49, 77, 707, 820, 947, 1289, 1514
PfoI	TCCNGGA	2 cut(s)	2133, 2376
PkrI	GCNGC	6 cut(s)	753, 1110, 1241, 1298, 2416, 2460
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	2326
PpuMI	RGGWCCY	1 cut(s)	2213
PshAI	GACNNNNGTC	1 cut(s)	1083
PshBI	ATTAAT	1 cut(s)	2489
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	2213
Psp6I	CCWGG	5 cut(s)	1123, 1617, 2133, 2185, 2376
PspGI	CCWGG	5 cut(s)	1123, 1617, 2133, 2185, 2376
PspN4I	GGNNCC	7 cut(s)	25, 1050, 1606, 1833, 2139, 2215, 2271
PspPI	GGNCC	2 cut(s)	2213, 2270
PspPPI	RGGWCCY	1 cut(s)	2213
PstNI	CAGNNNCTG	2 cut(s)	1352, 1382
PsuI	RGATCY	6 cut(s)	302, 845, 1604, 1817, 2024, 2137
PvuII	CAGCTG	1 cut(s)	1108
RsaI	GTAC	7 cut(s)	826, 1104, 1459, 1557, 1574, 1948, 2365
RsaNI	GTAC	7 cut(s)	825, 1103, 1458, 1556, 1573, 1947, 2364
RseI	CAYNNNNRTG	2 cut(s)	1473, 2244
SaqAI	TTAA	8 cut(s)	570, 1173, 1320, 1634, 1719, 1856, 1958, 2489
SatI	GCNGC	6 cut(s)	752, 1109, 1240, 1297, 2415, 2459
Sau96I	GGNCC	2 cut(s)	2213, 2270
ScaI	AGTACT	2 cut(s)	1948, 2365
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	7 cut(s)	1125, 1619, 1814, 1815, 2135, 2187, 2378
SduI	GDGCHC	3 cut(s)	1491, 1834, 2433
SfaNI	GCATC	2 cut(s)	176, 1275
SinI	GGWCC	2 cut(s)	2213, 2270
SmaI	CCCGGG	1 cut(s)	1815
SmiMI	CAYNNNNRTG	2 cut(s)	1473, 2244
SmlI	CTYRAG	2 cut(s)	1609, 1752
SmoI	CTYRAG	2 cut(s)	1609, 1752
SsiI	CCGC	6 cut(s)	751, 1038, 1549, 2459, 2495, 2588
SspMI	CTAG	5 cut(s)	116, 522, 1232, 2166, 2411
StyD4I	CCNGG	7 cut(s)	1123, 1617, 1812, 1813, 2133, 2185, 2376
StyI	CCWWGG	2 cut(s)	1778, 2239
TaiI	ACGT	5 cut(s)	1368, 1855, 2043, 2328, 2559
TaqI	TCGA	1 cut(s)	1164
TaqII	GACCGA	1 cut(s)	42
TatI	WGTACW	4 cut(s)	1102, 1457, 1946, 2363
TauI	GCSGC	2 cut(s)	754, 2461
TfiI	GAWTC	7 cut(s)	49, 77, 707, 820, 947, 1289, 1514
Tru1I	TTAA	8 cut(s)	570, 1173, 1320, 1634, 1719, 1856, 1958, 2489
Tru9I	TTAA	8 cut(s)	570, 1173, 1320, 1634, 1719, 1856, 1958, 2489
TscAI	CASTG	2 cut(s)	1731, 2446
TseFI	GTSAC	2 cut(s)	1865, 2466
TseI	GCWGC	4 cut(s)	1108, 1239, 1296, 2414
Tsp45I	GTSAC	2 cut(s)	1865, 2466
TspGWI	ACGGA	2 cut(s)	61, 2028
TspMI	CCCGGG	1 cut(s)	1813
TspRI	CASTG	2 cut(s)	1731, 2446
VpaK11BI	GGWCC	2 cut(s)	2213, 2270
VspI	ATTAAT	1 cut(s)	2489
XapI	RAATTY	3 cut(s)	665, 1188, 1927
XceI	RCATGY	1 cut(s)	2421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2263
XmaI	CCCGGG	1 cut(s)	1813
XmiI	GTMKAC	1 cut(s)	1588
XspI	CTAG	5 cut(s)	116, 522, 1232, 2166, 2411
ZrmI	AGTACT	2 cut(s)	1948, 2365
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.