Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Forward (+)

6141066 .. 6145156

Gene Structure 4091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG078900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2817 bp

ATGGTAAAGGGAGGGAAAGTTAGTTCCAAGCGAAGAGTCAAGCCACGGATTCGGTCTGATTATAAGGGTTCAGATGATTCGGATGAAGATTATGTGGTTTCAGATGAAGAAAAGCTAGTTTCTGAGGATTTGGAGGAGGATTATTGCTCCTCTTTGGATGGGAATGCATCAGAAGAGAGCCTTGGTAGTTTTGCAAAGGAGGAAGAGGAAGAGAGCTGGGGGAGAAAGAACAGTAGATCAAGAGCGAAAAAGGGTGTTGGTAGATCAAGAGCAAAAAAGGGCATTGATAGATCTATTGAGGACGAAGAGGTGGAGGATGAGCTGGAGGAGCAGGAGCAGGAGGAGGAAGATGAGGAGGAAATGAAAAAGGTGAGAAAGAATGGTAGATCAAGAGTGAAAAAGGGTAAAGATATATTTATTGCGGACGACGAGGAGGATGAGCTGGAGGAGGAAGAAGAAGAAGAGGAAAAGGCAATGAAAGAGGTGAGAAAGAACGGTAGATCAAGAGTGAAAAAGGGTAAAGATATATTTATTGCGGACGAGGAGGAGGATGAGCTGGAGGAGCAGGAGGAGGAGGAGGAAGATGAGGAGGAAATGAAAAAGGTGAGAAAGAACGGTAGATCAAGAGTGAAAAAGGGTAAAGATATATTTATTGCGGACGAGGAGGAGGATGAGCTGGAGGAGGAAGAAGAAGAAGAGGAAAAGGCAATGAAAGAGGTGAGGAAGGTGGCTAGATCACAGTCCCAAAACGGTTTCTCTGGAAGGCCGAAAAATAGGGTTAAAACATCACAAAAGAGGAGAAGGGATACATATGAAGACATGGCAGATGAGGATTATGATGATGAAGAAGATGACGACGACGACTACGATGAGGAATCTGATGAAGATGATTTTTCAGAATCGGAAGAAGAATCAAGGGTGAAAAAGAAGAAAACTAATGTGAAAATGGGCAAGCGGCGTTTGAAGAAAAAAGTTCCTGTAAGAAGAAAATCAAAGAAGCCTTTGAGAAAGAAACAAAAAAAGAATCGTACATTGAGGAGGAAAGTAAGATCTGATGATGATGATGGTGATTTTATGGACAGTAACCTGCCTGTGAGAGAGAAGAACAAGAAAAAAAGGCCAAACAAAAGGAGGAGATTTGTTGCTCCATCCGATTCAGATTTTGTGTCTTCTGGATCATCTGACTGTGATTACACCATTTCTGAGGAAGAGAGAGAGCAAGTGAGGGAAGCCAGGCAGTTGTGCGGAAGTTTGGAACCTAATTTCAGAAGCTCAATACTGCCTGACAAAATTCAGGAGAATGAGATTGTACAGCTGCCAAGAAAGCCTCCTGGAAGGAAAGGTAAAGAAAAGGTTGAGCAAGTGAAGGTCGAGGTGGTTAAGCAGGTCTGTGGAATTTGTCTCTCTGAGGAAGATAAGAGAAGACTGAGGGGAACACTAGACTGCTGCACTCATTATTTTTGTTTTTCCTGCATCATGGAATGGGGCAAAGTGGAATCTCGCTGCCCGTTATGCAAGCAGAGGTTTAAAGCAATTAGTAAACCCACCAGAGCAGGAACTGATTTGAGAGACGTGGTGATAACAGTCCCTGAGCGTGATCAGGTTTATCAGCCGACAGAAGAAGAACTGAGAAGTTATCTTGACCCTTATGAGAATGTGATTTGTACAGAATGTCATGAAGGTGGAGAAGATGGGCTCATGCTACTGTGTGATGTGTGCGATTCACCTGCTCACACCTATTGTGTTGGTCTTGGGCGGGTAGTACCCGAAGGTAATTGGTACTGTAATGGTTGTAGACCTGTTGCTCTGGGATCCTCAAGTTCCCAGGTTCAAGGTTGGTTACCTGAGCAGAGAACTACAAACAACATCTTGCCTAATAGACAACCACCTGCTGTAAGTTTTGGTGAAGGTTTGGAGATAGACCTTAATTCAGTGTCCTCTCCTCGTTCCTATATTCCTCAAGGATTTGGGAACTCCTCCTCCCCTTGGTTTCATGTTGGAGGTTTTCAAGTAGCTTCCCCGGGATCTGGGGCAGGGGCACCAACTCTGTCAGGAAGACGTTTAATGCACCGTCATATTCAGCAATTGATTACTGCTAGTAGAATGAATTATTTGGCCAGTAGAAATGAGAGGAATTCATCTGCTAATTTGAGTACTGATGTCTTAAATGCTCAAACTGCTCAGGGGAGGGAAACAGTAGTTCAGCATACAAGGACAGACGGAATGGACAGATCTTTTCACACATTCATTGAGAGATTACAAGAAAACCCCTCACTACAAGTGCAGGATAATGATATCTTTTTGTCAACATCAAGCCATCAGAGGAGGCAAGTAGTCCAGGATCCAACTACAACTTCTGCTGATAGACCTAGCAATGGAACATTATGGCCTGGACTTACAGAGAATACAATATCAGGTCCCCCTCACTTCAGCAGTATATCCGATGGTGGTTTGTCCCCCAATACAGTTATGGGACCAAGTGATTTTCACAGAGCAAAGGAACAACTGCAATCATTGGTCATAAGCCACGTAAAAAACTTATCCCGAGATAGGGATTTAGGCCAAAGTTCTACTACTTTCCAGGAGATCGCAAGGAGTGCTATGCACACCGTCCTAGCTGCATGTGAACTGGAGCACACAGGCAGTGAGGTAGTTCCCGTGCCGCCTTCATCACCCTGCCCTCACATTGAATTAATGGCGGGAAAGACAAGTCTGATGAGGGGTTGCTGTTCATCTTGTTTTGCACAGTTCGTTGAGGACGTGGTAAAGAGGGTCATGGAATACAGACTACCGCCGTGGTTGAGATTAGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

938

Amino Acids

106.85

Weight (kDa)

5.23

Isoelectric Point (pI)

77.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	463 - 506	1.8e-06	Ring finger domain
PHD	PF00628	555 - 598	2.3e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	2 cut(s)	1735, 1897
Acc36I	ACCTGC	4 cut(s)	1095, 1375, 1735, 1897
AccB1I	GGYRCC	1 cut(s)	2038
AccI	GTMKAC	1 cut(s)	1795
AciI	CCGC	9 cut(s)	422, 536, 656, 955, 1245, 1756, 2663, 2699, 2792
AclWI	GGATC	6 cut(s)	1183, 1806, 1819, 2032, 2336, 2349
AcoI	YGGCCR	1 cut(s)	2115
AcsI	RAATTY	3 cut(s)	1290, 1395, 2134
AcuI	CTGAAG	1 cut(s)	2413
AfaI	GTAC	6 cut(s)	1030, 1311, 1666, 1764, 1781, 2155
AfiI	CCNNNNNNNGG	5 cut(s)	1986, 2027, 2375, 2550, 2551
AgsI	TTSAA	4 cut(s)	964, 1832, 2009, 2690
AjiI	CACGTC	2 cut(s)	1573, 2761
AjnI	CCWGG	6 cut(s)	1232, 1330, 1824, 2337, 2389, 2580
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 2338, 2370
AloI	GAACNNNNNNTCC	4 cut(s)	7, 39, 1964, 1996
Alw21I	GWGCWC	1 cut(s)	2637
Alw26I	GTCTC	2 cut(s)	1406, 1563
AlwI	GGATC	6 cut(s)	1183, 1806, 1819, 2032, 2336, 2349
AlwNI	CAGNNNCTG	2 cut(s)	1559, 1589
Ama87I	CYCGRG	2 cut(s)	2020, 2544
AoxI	GGCC	5 cut(s)	764, 1118, 2115, 2387, 2560
ApeKI	GCWGC	4 cut(s)	1315, 1446, 1503, 2618
ApoI	RAATTY	3 cut(s)	1290, 1395, 2134
AseI	ATTAAT	1 cut(s)	2693
AspS9I	GGNCC	2 cut(s)	2417, 2474
AsuC2I	CCSGG	2 cut(s)	2021, 2022
AvaI	CYCGRG	2 cut(s)	2020, 2544
AvaII	GGWCC	2 cut(s)	2417, 2474
BaeGI	GKGCMC	1 cut(s)	2041
BalI	TGGCCA	1 cut(s)	2117
BamHI	GGATCC	2 cut(s)	1811, 2341
BanI	GGYRCC	1 cut(s)	2038
BanII	GRGCYC	1 cut(s)	1698
BbsI	GAAGAC	4 cut(s)	822, 1161, 1429, 2062
Bbv12I	GWGCWC	1 cut(s)	2637
BbvI	GCAGC	4 cut(s)	1302, 1433, 1490, 2605
BccI	CCATC	6 cut(s)	152, 1058, 1156, 1685, 2325, 2438
BceAI	ACGGC	1 cut(s)	2779
BcgI	CGANNNNNNTGC	2 cut(s)	1709, 1743
BciT130I	CCWGG	6 cut(s)	1234, 1332, 1826, 2339, 2391, 2582
BciVI	GTATCC	1 cut(s)	799
BclI	TGATCA	1 cut(s)	1597
BcnI	CCSGG	2 cut(s)	2021, 2022
BcoDI	GTCTC	2 cut(s)	1406, 1563
BfaI	CTAG	6 cut(s)	116, 732, 1439, 2097, 2370, 2615
BfuAI	ACCTGC	4 cut(s)	1095, 1375, 1735, 1897
BfuI	GTATCC	1 cut(s)	799
BglII	AGATCT	3 cut(s)	290, 1049, 2231
BisI	GCNGC	6 cut(s)	956, 1316, 1447, 1504, 2619, 2663
BlsI	GCNGC	6 cut(s)	957, 1317, 1448, 1505, 2620, 2664
BmcAI	AGTACT	1 cut(s)	2155
Bme1390I	CCNGG	8 cut(s)	1234, 1332, 1826, 2021, 2022, 2339, 2391, 2582
Bme18I	GGWCC	2 cut(s)	2417, 2474
BmeT110I	CYCGRG	2 cut(s)	2020, 2544
BmgBI	CACGTC	2 cut(s)	1573, 2761
BmgT120I	GGNCC	2 cut(s)	2417, 2474
BmiI	GGNNCC	6 cut(s)	1257, 1813, 2040, 2343, 2419, 2475
BmrFI	CCNGG	8 cut(s)	1234, 1332, 1826, 2021, 2022, 2339, 2391, 2582
BmsI	GCATC	2 cut(s)	176, 1482
BpiI	GAAGAC	4 cut(s)	822, 1161, 1429, 2062
BplI	GAGNNNNNCTC	1 cut(s)	2794
BpmI	CTGGAG	5 cut(s)	344, 464, 578, 698, 2651
Bpu10I	CCTNAGC	3 cut(s)	1590, 1845, 2181
BpuEI	CTTGAG	2 cut(s)	1801, 1944
BpuMI	CCSGG	2 cut(s)	2021, 2022
BsaAI	YACGTR	1 cut(s)	2530
BsaJI	CCNNGG	7 cut(s)	44, 181, 1824, 1985, 2019, 2020, 2795
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 1964, 1994
Bsc4I	CCNNNNNNNGG	5 cut(s)	1986, 2027, 2375, 2550, 2551
Bse1I	ACTGG	2 cut(s)	2118, 2634
Bse3DI	GCAATG	3 cut(s)	480, 714, 2380
BseBI	CCWGG	6 cut(s)	1234, 1332, 1826, 2339, 2391, 2582
BseDI	CCNNGG	7 cut(s)	44, 181, 1824, 1985, 2019, 2020, 2795
BseGI	GGATG	7 cut(s)	88, 163, 322, 442, 556, 676, 1148
BseLI	CCNNNNNNNGG	5 cut(s)	1986, 2027, 2375, 2550, 2551
BseMI	GCAATG	3 cut(s)	480, 714, 2380
BseMII	CTCAG	8 cut(s)	114, 1194, 1398, 1418, 1581, 1619, 1836, 2195
BseNI	ACTGG	2 cut(s)	2118, 2634
BseSI	GKGCMC	1 cut(s)	2041
BseXI	GCAGC	4 cut(s)	1302, 1433, 1490, 2605
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	2 cut(s)	1432, 2303
BshFI	GGCC	5 cut(s)	766, 1120, 2117, 2389, 2562
BshNI	GGYRCC	1 cut(s)	2038
BsiHKAI	GWGCWC	1 cut(s)	2637
BsiHKCI	CYCGRG	2 cut(s)	2020, 2544
BsiSI	CCGG	1 cut(s)	2021
BslFI	GGGAC	5 cut(s)	727, 1571, 2403, 2440, 2487
BslI	CCNNNNNNNGG	5 cut(s)	1986, 2027, 2375, 2550, 2551
BsmAI	GTCTC	2 cut(s)	1406, 1563
BsmBI	CGTCTC	1 cut(s)	1563
BsmFI	GGGAC	5 cut(s)	727, 1571, 2403, 2440, 2487
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	766, 1120, 2117, 2389, 2562
BsoBI	CYCGRG	2 cut(s)	2020, 2544
Bsp1286I	GDGCHC	3 cut(s)	1698, 2041, 2637
Bsp1407I	TGTACA	2 cut(s)	1309, 1664
BspACI	CCGC	9 cut(s)	422, 536, 656, 955, 1245, 1756, 2663, 2699, 2792
BspANI	GGCC	5 cut(s)	766, 1120, 2117, 2389, 2562
BspCNI	CTCAG	8 cut(s)	115, 1195, 1399, 1419, 1582, 1620, 1837, 2194
BspHI	TCATGA	1 cut(s)	1675
BspLI	GGNNCC	6 cut(s)	1257, 1813, 2040, 2343, 2419, 2475
BspMI	ACCTGC	4 cut(s)	1095, 1375, 1735, 1897
BspPI	GGATC	6 cut(s)	1183, 1806, 1819, 2032, 2336, 2349
BspT107I	GGYRCC	1 cut(s)	2038
BsrDI	GCAATG	3 cut(s)	480, 714, 2380
BsrGI	TGTACA	2 cut(s)	1309, 1664
BsrI	ACTGG	2 cut(s)	2118, 2634
BssECI	CCNNGG	7 cut(s)	44, 181, 1824, 1985, 2019, 2020, 2795
BssT1I	CCWWGG	2 cut(s)	181, 1985
Bst2UI	CCWGG	6 cut(s)	1234, 1332, 1826, 2339, 2391, 2582
Bst6I	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 456, 690, 1203
BstAPI	GCANNNNNTGC	1 cut(s)	2597
BstAUI	TGTACA	2 cut(s)	1309, 1664
BstBAI	YACGTR	1 cut(s)	2530
BstC8I	GCNNGC	2 cut(s)	953, 1517
BstDEI	CTNAG	8 cut(s)	123, 1203, 1407, 1427, 1590, 1628, 1845, 2181
BstDSI	CCRYGG	2 cut(s)	44, 2795
BstEII	GGTNACC	1 cut(s)	1839
BstF5I	GGATG	7 cut(s)	88, 163, 322, 442, 556, 676, 1148
BstMAI	GTCTC	2 cut(s)	1406, 1563
BstMWI	GCNNNNNNNGC	6 cut(s)	328, 562, 1324, 1512, 2177, 2597
BstNI	CCWGG	6 cut(s)	1234, 1332, 1826, 2339, 2391, 2582
BstNSI	RCATGY	1 cut(s)	2625
BstPI	GGTNACC	1 cut(s)	1839
BstSCI	CCNGG	8 cut(s)	1232, 1330, 1824, 2019, 2020, 2337, 2389, 2580
BstSLI	GKGCMC	1 cut(s)	2041
BstV1I	GCAGC	4 cut(s)	1302, 1433, 1490, 2605
BstV2I	GAAGAC	4 cut(s)	822, 1161, 1429, 2062
BstX2I	RGATCY	6 cut(s)	290, 1049, 1811, 2024, 2231, 2341
BstYI	RGATCY	6 cut(s)	290, 1049, 1811, 2024, 2231, 2341
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	5 cut(s)	766, 1120, 2117, 2389, 2562
BtgI	CCRYGG	2 cut(s)	44, 2795
BtrI	CACGTC	2 cut(s)	1573, 2761
BtsCI	GGATG	7 cut(s)	88, 163, 322, 442, 556, 676, 1148
BtsI	GCAGTG	1 cut(s)	2650
BtsIMutI	CAGTG	2 cut(s)	1938, 2650
BveI	ACCTGC	4 cut(s)	1095, 1375, 1735, 1897
Cac8I	GCNNGC	2 cut(s)	953, 1517
CaiI	CAGNNNCTG	2 cut(s)	1559, 1589
CciI	TCATGA	1 cut(s)	1675
Cfr13I	GGNCC	2 cut(s)	2417, 2474
Cfr9I	CCCGGG	1 cut(s)	2020
Csp6I	GTAC	6 cut(s)	1029, 1310, 1665, 1763, 1780, 2154
CviAII	CATG	7 cut(s)	820, 1477, 1676, 1699, 1994, 2622, 2776
CviQI	GTAC	6 cut(s)	1029, 1310, 1665, 1763, 1780, 2154
DdeI	CTNAG	8 cut(s)	123, 1203, 1407, 1427, 1590, 1628, 1845, 2181
DraI	TTTAAA	1 cut(s)	1528
EaeI	YGGCCR	1 cut(s)	2115
Eam1104I	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 456, 690, 1203
EarI	CTCTTC	8 cut(s)	28, 168, 198, 204, 300, 456, 690, 1203
Eco130I	CCWWGG	2 cut(s)	181, 1985
Eco24I	GRGCYC	1 cut(s)	1698
Eco32I	GATATC	1 cut(s)	2296
Eco47I	GGWCC	2 cut(s)	2417, 2474
Eco57I	CTGAAG	1 cut(s)	2413
Eco88I	CYCGRG	2 cut(s)	2020, 2544
Eco91I	GGTNACC	1 cut(s)	1839
EcoO109I	RGGNCCY	1 cut(s)	2417
EcoO65I	GGTNACC	1 cut(s)	1839
EcoRI	GAATTC	1 cut(s)	2134
EcoRII	CCWGG	6 cut(s)	1232, 1330, 1824, 2337, 2389, 2580
EcoRV	GATATC	1 cut(s)	2296
EcoT14I	CCWWGG	2 cut(s)	181, 1985
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	1698
ErhI	CCWWGG	2 cut(s)	181, 1985
Esp3I	CGTCTC	1 cut(s)	1563
FaeI	CATG	7 cut(s)	823, 1480, 1679, 1702, 1997, 2625, 2779
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	5 cut(s)	727, 1571, 2403, 2440, 2487
FatI	CATG	7 cut(s)	819, 1476, 1675, 1698, 1993, 2621, 2775
FauI	CCCGC	2 cut(s)	1749, 2692
FauNDI	CATATG	1 cut(s)	811
FbaI	TGATCA	1 cut(s)	1597
FblI	GTMKAC	1 cut(s)	1795
Fnu4HI	GCNGC	6 cut(s)	956, 1316, 1447, 1504, 2619, 2663
FokI	GGATG	7 cut(s)	95, 170, 329, 449, 563, 683, 1135
FriOI	GRGCYC	1 cut(s)	1698
Fsp4HI	GCNGC	6 cut(s)	956, 1316, 1447, 1504, 2619, 2663
FspBI	CTAG	6 cut(s)	116, 732, 1439, 2097, 2370, 2615
GluI	GCNGC	6 cut(s)	956, 1316, 1447, 1504, 2619, 2663
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	5 cut(s)	344, 464, 578, 698, 2651
HaeIII	GGCC	5 cut(s)	766, 1120, 2117, 2389, 2562
HapII	CCGG	1 cut(s)	2021
Hin1II	CATG	7 cut(s)	823, 1480, 1679, 1702, 1997, 2625, 2779
HincII	GTYRAC	1 cut(s)	2307
HindII	GTYRAC	1 cut(s)	2307
HpaII	CCGG	1 cut(s)	2021
Hpy166II	GTNNAC	4 cut(s)	1541, 1796, 2307, 2627
Hpy8I	GTNNAC	4 cut(s)	1541, 1796, 2307, 2627
Hpy99I	CGWCG	3 cut(s)	431, 860, 863
HpyAV	CCTTC	9 cut(s)	718, 756, 795, 1329, 1360, 1673, 1763, 1901, 2676
HpyCH4IV	ACGT	4 cut(s)	1572, 2059, 2529, 2760
HpyF10VI	GCNNNNNNNGC	6 cut(s)	328, 562, 1324, 1512, 2177, 2597
HpyF3I	CTNAG	8 cut(s)	123, 1203, 1407, 1427, 1590, 1628, 1845, 2181
HpySE526I	ACGT	4 cut(s)	1572, 2059, 2529, 2760
Hsp92II	CATG	7 cut(s)	823, 1480, 1679, 1702, 1997, 2625, 2779
Ksp22I	TGATCA	1 cut(s)	1597
LmnI	GCTCC	6 cut(s)	152, 328, 334, 562, 1150, 2632
Lsp1109I	GCAGC	4 cut(s)	1302, 1433, 1490, 2605
LweI	GCATC	2 cut(s)	176, 1482
MaeI	CTAG	6 cut(s)	116, 732, 1439, 2097, 2370, 2615
MaeII	ACGT	4 cut(s)	1572, 2059, 2529, 2760
MaeIII	GTNAC	2 cut(s)	1082, 1839
MfeI	CAATTG	1 cut(s)	2084
MflI	RGATCY	6 cut(s)	290, 1049, 1811, 2024, 2231, 2341
MhlI	GDGCHC	3 cut(s)	1698, 2041, 2637
MlsI	TGGCCA	1 cut(s)	2117
MluNI	TGGCCA	1 cut(s)	2117
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	2 cut(s)	1978, 2369
Mox20I	TGGCCA	1 cut(s)	2117
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	2117
MseI	TTAA	7 cut(s)	780, 1380, 1527, 1926, 2063, 2165, 2693
MslI	CAYNNNNRTG	1 cut(s)	1680
Msp20I	TGGCCA	1 cut(s)	2117
MspA1I	CMGCKG	1 cut(s)	1315
MspI	CCGG	1 cut(s)	2021
MspR9I	CCNGG	8 cut(s)	1234, 1332, 1826, 2021, 2022, 2339, 2391, 2582
MunI	CAATTG	1 cut(s)	2084
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	6 cut(s)	1234, 1332, 1826, 2339, 2391, 2582
MwoI	GCNNNNNNNGC	6 cut(s)	328, 562, 1324, 1512, 2177, 2597
NciI	CCSGG	2 cut(s)	2021, 2022
NdeI	CATATG	1 cut(s)	811
NlaIII	CATG	7 cut(s)	823, 1480, 1679, 1702, 1997, 2625, 2779
NlaIV	GGNNCC	6 cut(s)	1257, 1813, 2040, 2343, 2419, 2475
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	2625
PagI	TCATGA	1 cut(s)	1675
PaqCI	CACCTGC	2 cut(s)	1735, 1897
PcsI	WCGNNNNNNNCGW	2 cut(s)	864, 2757
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	9 cut(s)	49, 77, 875, 899, 911, 1024, 1154, 1496, 1721
PfoI	TCCNGGA	3 cut(s)	1330, 2337, 2580
PkrI	GCNGC	6 cut(s)	957, 1317, 1448, 1505, 2620, 2664
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	2530
PpuMI	RGGWCCY	1 cut(s)	2417
PshBI	ATTAAT	1 cut(s)	2693
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	2417
Psp6I	CCWGG	6 cut(s)	1232, 1330, 1824, 2337, 2389, 2580
PspEI	GGTNACC	1 cut(s)	1839
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	6 cut(s)	1232, 1330, 1824, 2337, 2389, 2580
PspN4I	GGNNCC	6 cut(s)	1257, 1813, 2040, 2343, 2419, 2475
PspPI	GGNCC	2 cut(s)	2417, 2474
PspPPI	RGGWCCY	1 cut(s)	2417
PstNI	CAGNNNCTG	2 cut(s)	1559, 1589
PsuI	RGATCY	6 cut(s)	290, 1049, 1811, 2024, 2231, 2341
PvuII	CAGCTG	1 cut(s)	1315
RsaI	GTAC	6 cut(s)	1030, 1311, 1666, 1764, 1781, 2155
RsaNI	GTAC	6 cut(s)	1029, 1310, 1665, 1763, 1780, 2154
RseI	CAYNNNNRTG	1 cut(s)	1680
SaqAI	TTAA	7 cut(s)	780, 1380, 1527, 1926, 2063, 2165, 2693
SatI	GCNGC	6 cut(s)	956, 1316, 1447, 1504, 2619, 2663
Sau96I	GGNCC	2 cut(s)	2417, 2474
ScaI	AGTACT	1 cut(s)	2155
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	8 cut(s)	1234, 1332, 1826, 2021, 2022, 2339, 2391, 2582
SduI	GDGCHC	3 cut(s)	1698, 2041, 2637
SfaNI	GCATC	2 cut(s)	176, 1482
SinI	GGWCC	2 cut(s)	2417, 2474
SmaI	CCCGGG	1 cut(s)	2022
SmiMI	CAYNNNNRTG	1 cut(s)	1680
SmlI	CTYRAG	2 cut(s)	1816, 1959
SmoI	CTYRAG	2 cut(s)	1816, 1959
SsiI	CCGC	9 cut(s)	422, 536, 656, 955, 1245, 1756, 2663, 2699, 2792
SspMI	CTAG	6 cut(s)	116, 732, 1439, 2097, 2370, 2615
StyD4I	CCNGG	8 cut(s)	1232, 1330, 1824, 2019, 2020, 2337, 2389, 2580
StyI	CCWWGG	2 cut(s)	181, 1985
TaiI	ACGT	4 cut(s)	1575, 2062, 2532, 2763
TaqI	TCGA	1 cut(s)	1371
TaqII	GACCGA	1 cut(s)	42
TatI	WGTACW	3 cut(s)	1309, 1664, 2153
TauI	GCSGC	2 cut(s)	958, 2665
TfiI	GAWTC	9 cut(s)	49, 77, 875, 899, 911, 1024, 1154, 1496, 1721
Tru1I	TTAA	7 cut(s)	780, 1380, 1527, 1926, 2063, 2165, 2693
Tru9I	TTAA	7 cut(s)	780, 1380, 1527, 1926, 2063, 2165, 2693
TscAI	CASTG	2 cut(s)	1938, 2650
TseI	GCWGC	4 cut(s)	1315, 1446, 1503, 2618
TspGWI	ACGGA	2 cut(s)	61, 2235
TspMI	CCCGGG	1 cut(s)	2020
TspRI	CASTG	2 cut(s)	1938, 2650
VpaK11BI	GGWCC	2 cut(s)	2417, 2474
VspI	ATTAAT	1 cut(s)	2693
XapI	RAATTY	3 cut(s)	1290, 1395, 2134
XceI	RCATGY	1 cut(s)	2625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2467
XmaI	CCCGGG	1 cut(s)	2020
XmiI	GTMKAC	1 cut(s)	1795
XspI	CTAG	6 cut(s)	116, 732, 1439, 2097, 2370, 2615
ZrmI	AGTACT	1 cut(s)	2155
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.