Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Reverse (-)

43399513 .. 43403557

Gene Structure 4045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGAAAAAGTTGAGAAAGTACGGTAGATCAAGAGCGAAAAAGGGTAAAGATATATTTATTGCCTACGAGGAGGAGGATGAGCAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGTGAGGAAGGTGGCTAGATCAAAGTCCCAAAATGGTTTCTCTGGAAGGCAGAAAAATGGGGTTAAACCATCACAAAAGAGGAGAAGGGCTACATATGAAGAAATGGCAGATCAGGATTATGATGATGAAGAAGATGAGGACGACGACTATGATGAGGAATTTACACCCGATGAAGATGATTTTTCAGAATTGGAAGAAGAATCAAGGGTGAAAAAGAAGAAAACTAATGTGAAAGTGGGCAAGCAGCGTTTGAAGAAAAAAGTTCCTATAAGAAGAAAATCAAAGAAGCCTTTGAGAAAGAAACAAAAAAAGAATCGTACATTGAGGAGGAAAGCAAGATCTGATGATGATGATGGTGATTTTATGGACAGTAACCTGCCTGTTAGAGAGAAAAACAAGAACAAAAGGCCAAACAAAAGGAGGAGATTTGTTGCTCCATCCGATTCAGATTTTGTGTCTTCTGGATCATCTGACTGTGATTACACCATTTCTGAGGAAGAGAGAGAGCAAGTGAGGGAAGCCATGCAGTTGTGCGGAAGTTTGGAAAGCTCAATACTGCCTGACAAAATTCAGGAGAATGAGACTGTACAGCTGCCAAGAAAGCCTCCTGGTAGGAAAGGTAAAGAAAAGGTTGAGCAAGTGAAGGTCGAGGTGGTTAAGCAGGTCTGTGGAATTTGTCTCTCTGAGGAAGATAAGAGAAGAGTGAGGGGAACACTAGACTGCTGCACTCATTATTTTTGTTTTTCCTGCATCATGGAATGGGGCAAAGTGGAATCTCGCTGCCCATTATGCAAGCAGAGGTTTAAAGCAATTACTAAACCCACAAGAGCAGGAACTGATTTGAGAGATGTGGTGATAACAGTCCCTGAGCGTGATCAGGTTTATCAGCCGACAGAAGAAGAACTGAGAAGTTATCTTGACCCTTATGAGAATGTGATTTGTACAGAATGTCATGAAGGTGGAGATGATGGGCTCATGCTACTGTGTGATGTGTGCGATTCACCTGCTCACACCTATTGTGTTGGTCTTGGGCGGGAAGTACCCGAAGGTAATTGGTACTGTGATGGTTGTAGACCTGTTGCTCTGGGATCCTCCAGTTCCCAGGTTCAAGGTCGGTTAACTGAGCAGAGAACTACAAACAACATCTTGCCTAATAGACAATCACCGGCTGTAAGTTTTGGTGAAGGTTTAGAGATAGACCTTAATTCAGTGTCCTCTCCTCGTTCCTATATTACTCAAGGATTTGGGAACTCCTCCTCCCCTTGGTTTCATGTTGGAGGTTTTCAAGTAGCTTCCCCGGGATCTGGGGCAGGGGCACCAACTCTGTCAGGAAGACGTTTAATGCACCGTCATATTCAGCAATTGATTACTGCTAATAGAAGGAGTTATTTGGCCAGTAGAAATGAGAGGAATTCATCTGCTAATTTGAGTACTGATGTCTTAAATGGTCAAACTGCTCCGGGGAGGGAAACAGTAGTTCAGCATACAAGGACAGACGGAATGGACAGATCTTTTCACACATTCTTTGAGGAGAGATTACAAGAAAACCCCTCACTACAAGTGCAGGATAATGATATCTTTTTGTCAACATCAAGCCATCAGAGAAGGCAAGTAGTCCAGGATCCAACTACAACTTCTGCTGATAGACCTAGCAATGGAACATTATGGCCTGGACTTACAGAGAATACAATATCAGGTCGTCCCCCTCACTTCAGCAGTATATCCGATGGTGGTGTGCCCCCCAATACAGTTATGGGACCAAGTGATTTTCACAGAGCAAAGGAACAACTGCAATCATTGGTCATAAGCCACGTAAAAAACTTATCCCGAGATAGGGATTTAGGCCAAAGTAGTACTACTTTCCAGGAGATCGCAAGGAGTGCTATGCACACCGTCCTAGCTGCATGTGAACTGGAGCACACAGGCAGTGAGGTAGTTCCCGTGCCGCCTTCATCACCCTGCCCTCACATTGAATTAATGGCAGGAAAGACTAGTCTGATGAGAGGTTGCTGTTCATCTTGTTTTGCACAGTTCGTTGAGGACGTGGTAAAGAGGGTCATGGAATACAAACTACCGCCGTGGTTGAGATTGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

736

Amino Acids

83.24

Weight (kDa)

6.62

Isoelectric Point (pI)

72.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	259 - 302	7.1e-07	Ring finger domain
PHD	PF00628	351 - 394	8.7e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1123
Acc36I	ACCTGC	3 cut(s)	495, 763, 1123
AccB1I	GGYRCC	1 cut(s)	1426
AccI	GTMKAC	1 cut(s)	1183
AciI	CCGC	4 cut(s)	645, 1144, 2057, 2186
AclWI	GGATC	6 cut(s)	583, 1194, 1207, 1420, 1727, 1740
AcoI	YGGCCR	1 cut(s)	1503
AcsI	RAATTY	4 cut(s)	269, 678, 783, 1522
AcuI	CTGAAG	1 cut(s)	1807
AfaI	GTAC	8 cut(s)	20, 430, 699, 1054, 1152, 1169, 1543, 1966
AfiI	CCNNNNNNNGG	5 cut(s)	1374, 1415, 1766, 1944, 1945
AgsI	TTSAA	4 cut(s)	364, 1220, 1397, 2084
AhlI	ACTAGT	1 cut(s)	2102
AjiI	CACGTC	1 cut(s)	2155
AjnI	CCWGG	5 cut(s)	718, 1212, 1728, 1780, 1974
AjuI	GAANNNNNNNTTGG	2 cut(s)	1729, 1761
AloI	GAACNNNNNNTCC	2 cut(s)	1352, 1384
AluBI	AGCT	4 cut(s)	660, 703, 1403, 2012
AluI	AGCT	4 cut(s)	660, 703, 1403, 2012
Alw21I	GWGCWC	1 cut(s)	2031
Alw26I	GTCTC	2 cut(s)	686, 794
AlwI	GGATC	6 cut(s)	583, 1194, 1207, 1420, 1727, 1740
AlwNI	CAGNNNCTG	2 cut(s)	947, 977
Ama87I	CYCGRG	2 cut(s)	1408, 1938
AoxI	GGCC	4 cut(s)	518, 1503, 1778, 1954
ApeKI	GCWGC	5 cut(s)	355, 703, 834, 891, 2012
ApoI	RAATTY	4 cut(s)	269, 678, 783, 1522
AseI	ATTAAT	1 cut(s)	2087
AspS9I	GGNCC	1 cut(s)	1868
AsuC2I	CCSGG	3 cut(s)	1409, 1410, 1572
AsuHPI	GGTGA	8 cut(s)	124, 331, 479, 976, 1104, 1266, 1304, 2058
AvaI	CYCGRG	2 cut(s)	1408, 1938
AvaII	GGWCC	1 cut(s)	1868
BaeGI	GKGCMC	2 cut(s)	1429, 1851
BalI	TGGCCA	1 cut(s)	1505
BamHI	GGATCC	2 cut(s)	1199, 1732
BanI	GGYRCC	1 cut(s)	1426
BanII	GRGCYC	1 cut(s)	1086
BbsI	GAAGAC	2 cut(s)	561, 1450
Bbv12I	GWGCWC	1 cut(s)	2031
BbvI	GCAGC	5 cut(s)	367, 690, 821, 878, 1999
BccI	CCATC	7 cut(s)	187, 458, 556, 1073, 1169, 1716, 1832
BceAI	ACGGC	1 cut(s)	2173
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	5 cut(s)	720, 1214, 1730, 1782, 1976
BclI	TGATCA	1 cut(s)	985
BcnI	CCSGG	3 cut(s)	1409, 1410, 1572
BcoDI	GTCTC	2 cut(s)	686, 794
BcuI	ACTAGT	1 cut(s)	2102
BfaI	CTAG	5 cut(s)	126, 827, 1761, 2009, 2103
BfuAI	ACCTGC	3 cut(s)	495, 763, 1123
BglII	AGATCT	2 cut(s)	449, 1619
BisI	GCNGC	6 cut(s)	356, 704, 835, 892, 2013, 2057
BlsI	GCNGC	6 cut(s)	357, 705, 836, 893, 2014, 2058
BmcAI	AGTACT	2 cut(s)	1543, 1966
Bme1390I	CCNGG	8 cut(s)	720, 1214, 1409, 1410, 1572, 1730, 1782, 1976
Bme18I	GGWCC	1 cut(s)	1868
BmeT110I	CYCGRG	2 cut(s)	1408, 1938
BmgBI	CACGTC	1 cut(s)	2155
BmgT120I	GGNCC	1 cut(s)	1868
BmiI	GGNNCC	4 cut(s)	1201, 1428, 1734, 1869
BmrFI	CCNGG	8 cut(s)	720, 1214, 1409, 1410, 1572, 1730, 1782, 1976
BmsI	GCATC	1 cut(s)	870
BpiI	GAAGAC	2 cut(s)	561, 1450
BplI	GAGNNNNNCTC	1 cut(s)	2188
BpmI	CTGGAG	2 cut(s)	1189, 2045
Bpu10I	CCTNAGC	1 cut(s)	978
BpuEI	CTTGAG	1 cut(s)	1332
BpuMI	CCSGG	3 cut(s)	1409, 1410, 1572
BsaAI	YACGTR	1 cut(s)	1924
BsaJI	CCNNGG	6 cut(s)	1212, 1373, 1407, 1408, 1571, 2189
BsaXI	ACNNNNNCTCC	2 cut(s)	1352, 1382
Bsc4I	CCNNNNNNNGG	5 cut(s)	1374, 1415, 1766, 1944, 1945
Bse118I	RCCGGY	1 cut(s)	1276
Bse1I	ACTGG	3 cut(s)	1206, 1506, 2028
Bse3DI	GCAATG	1 cut(s)	1771
BseBI	CCWGG	5 cut(s)	720, 1214, 1730, 1782, 1976
BseDI	CCNNGG	6 cut(s)	1212, 1373, 1407, 1408, 1571, 2189
BseGI	GGATG	2 cut(s)	82, 548
BseLI	CCNNNNNNNGG	5 cut(s)	1374, 1415, 1766, 1944, 1945
BseMI	GCAATG	1 cut(s)	1771
BseMII	CTCAG	5 cut(s)	594, 786, 969, 1007, 1224
BseNI	ACTGG	3 cut(s)	1206, 1506, 2028
BseSI	GKGCMC	2 cut(s)	1429, 1851
BseXI	GCAGC	5 cut(s)	367, 690, 821, 878, 1999
BsgI	GTGCAG	2 cut(s)	820, 1694
BshFI	GGCC	4 cut(s)	520, 1505, 1780, 1956
BshNI	GGYRCC	1 cut(s)	1426
BsiHKAI	GWGCWC	1 cut(s)	2031
BsiHKCI	CYCGRG	2 cut(s)	1408, 1938
BsiSI	CCGG	3 cut(s)	1277, 1409, 1571
BslFI	GGGAC	4 cut(s)	121, 959, 1797, 1881
BslI	CCNNNNNNNGG	5 cut(s)	1374, 1415, 1766, 1944, 1945
BsmAI	GTCTC	2 cut(s)	686, 794
BsmFI	GGGAC	4 cut(s)	121, 959, 1797, 1881
BsnI	GGCC	4 cut(s)	520, 1505, 1780, 1956
BsoBI	CYCGRG	2 cut(s)	1408, 1938
Bsp1286I	GDGCHC	4 cut(s)	1086, 1429, 1851, 2031
Bsp1407I	TGTACA	2 cut(s)	697, 1052
BspACI	CCGC	4 cut(s)	645, 1144, 2057, 2186
BspANI	GGCC	4 cut(s)	520, 1505, 1780, 1956
BspCNI	CTCAG	5 cut(s)	595, 787, 970, 1008, 1225
BspHI	TCATGA	1 cut(s)	1063
BspLI	GGNNCC	4 cut(s)	1201, 1428, 1734, 1869
BspMI	ACCTGC	3 cut(s)	495, 763, 1123
BspPI	GGATC	6 cut(s)	583, 1194, 1207, 1420, 1727, 1740
BspT107I	GGYRCC	1 cut(s)	1426
BsrDI	GCAATG	1 cut(s)	1771
BsrFI	RCCGGY	1 cut(s)	1276
BsrGI	TGTACA	2 cut(s)	697, 1052
BsrI	ACTGG	3 cut(s)	1206, 1506, 2028
BssAI	RCCGGY	1 cut(s)	1276
BssECI	CCNNGG	6 cut(s)	1212, 1373, 1407, 1408, 1571, 2189
BssT1I	CCWWGG	1 cut(s)	1373
Bst2UI	CCWGG	5 cut(s)	720, 1214, 1730, 1782, 1976
Bst6I	CTCTTC	4 cut(s)	96, 102, 603, 805
BstAPI	GCANNNNNTGC	1 cut(s)	1991
BstAUI	TGTACA	2 cut(s)	697, 1052
BstBAI	YACGTR	1 cut(s)	1924
BstC8I	GCNNGC	2 cut(s)	353, 905
BstDEI	CTNAG	5 cut(s)	603, 795, 978, 1016, 1233
BstDSI	CCRYGG	1 cut(s)	2189
BstF5I	GGATG	2 cut(s)	82, 548
BstMAI	GTCTC	2 cut(s)	686, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	712, 900, 1991
BstNI	CCWGG	5 cut(s)	720, 1214, 1730, 1782, 1976
BstNSI	RCATGY	1 cut(s)	2019
BstSCI	CCNGG	8 cut(s)	718, 1212, 1407, 1408, 1570, 1728, 1780, 1974
BstSLI	GKGCMC	2 cut(s)	1429, 1851
BstV1I	GCAGC	5 cut(s)	367, 690, 821, 878, 1999
BstV2I	GAAGAC	2 cut(s)	561, 1450
BstX2I	RGATCY	5 cut(s)	449, 1199, 1412, 1619, 1732
BstYI	RGATCY	5 cut(s)	449, 1199, 1412, 1619, 1732
BsuRI	GGCC	4 cut(s)	520, 1505, 1780, 1956
BtgI	CCRYGG	1 cut(s)	2189
BtrI	CACGTC	1 cut(s)	2155
BtsCI	GGATG	2 cut(s)	82, 548
BtsI	GCAGTG	1 cut(s)	2044
BtsIMutI	CAGTG	2 cut(s)	1326, 2044
BveI	ACCTGC	3 cut(s)	495, 763, 1123
Cac8I	GCNNGC	2 cut(s)	353, 905
CaiI	CAGNNNCTG	2 cut(s)	947, 977
CciI	TCATGA	1 cut(s)	1063
Cfr10I	RCCGGY	1 cut(s)	1276
Cfr13I	GGNCC	1 cut(s)	1868
Cfr9I	CCCGGG	1 cut(s)	1408
Csp6I	GTAC	8 cut(s)	19, 429, 698, 1053, 1151, 1168, 1542, 1965
CviAII	CATG	7 cut(s)	634, 865, 1064, 1087, 1382, 2016, 2170
CviQI	GTAC	8 cut(s)	19, 429, 698, 1053, 1151, 1168, 1542, 1965
DdeI	CTNAG	5 cut(s)	603, 795, 978, 1016, 1233
DraI	TTTAAA	1 cut(s)	916
EaeI	YGGCCR	1 cut(s)	1503
Eam1104I	CTCTTC	4 cut(s)	96, 102, 603, 805
EarI	CTCTTC	4 cut(s)	96, 102, 603, 805
Eco130I	CCWWGG	1 cut(s)	1373
Eco24I	GRGCYC	1 cut(s)	1086
Eco32I	GATATC	1 cut(s)	1687
Eco47I	GGWCC	1 cut(s)	1868
Eco57I	CTGAAG	1 cut(s)	1807
Eco88I	CYCGRG	2 cut(s)	1408, 1938
EcoRI	GAATTC	1 cut(s)	1522
EcoRII	CCWGG	5 cut(s)	718, 1212, 1728, 1780, 1974
EcoRV	GATATC	1 cut(s)	1687
EcoT14I	CCWWGG	1 cut(s)	1373
EcoT38I	GRGCYC	1 cut(s)	1086
ErhI	CCWWGG	1 cut(s)	1373
FaeI	CATG	7 cut(s)	637, 868, 1067, 1090, 1385, 2019, 2173
FaqI	GGGAC	4 cut(s)	121, 959, 1797, 1881
FatI	CATG	7 cut(s)	633, 864, 1063, 1086, 1381, 2015, 2169
FauI	CCCGC	1 cut(s)	1137
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	985
FblI	GTMKAC	1 cut(s)	1183
Fnu4HI	GCNGC	6 cut(s)	356, 704, 835, 892, 2013, 2057
FokI	GGATG	2 cut(s)	89, 535
FriOI	GRGCYC	1 cut(s)	1086
Fsp4HI	GCNGC	6 cut(s)	356, 704, 835, 892, 2013, 2057
FspBI	CTAG	5 cut(s)	126, 827, 1761, 2009, 2103
GluI	GCNGC	6 cut(s)	356, 704, 835, 892, 2013, 2057
GsuI	CTGGAG	2 cut(s)	1189, 2045
HaeIII	GGCC	4 cut(s)	520, 1505, 1780, 1956
HapII	CCGG	3 cut(s)	1277, 1409, 1571
Hin1II	CATG	7 cut(s)	637, 868, 1067, 1090, 1385, 2019, 2173
HincII	GTYRAC	2 cut(s)	1230, 1698
HindII	GTYRAC	2 cut(s)	1230, 1698
HinfI	GANTC	5 cut(s)	311, 424, 554, 884, 1109
HpaI	GTTAAC	1 cut(s)	1230
HpaII	CCGG	3 cut(s)	1277, 1409, 1571
HphI	GGTGA	8 cut(s)	124, 331, 479, 976, 1104, 1266, 1304, 2058
Hpy166II	GTNNAC	4 cut(s)	1184, 1230, 1698, 2021
Hpy188III	TCNNGA	9 cut(s)	30, 153, 224, 573, 683, 1028, 1064, 1440, 1938
Hpy8I	GTNNAC	4 cut(s)	1184, 1230, 1698, 2021
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4IV	ACGT	3 cut(s)	1447, 1923, 2154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	712, 900, 1991
HpyF3I	CTNAG	5 cut(s)	603, 795, 978, 1016, 1233
HpySE526I	ACGT	3 cut(s)	1447, 1923, 2154
Hsp92II	CATG	7 cut(s)	637, 868, 1067, 1090, 1385, 2019, 2173
Ksp22I	TGATCA	1 cut(s)	985
KspAI	GTTAAC	1 cut(s)	1230
LmnI	GCTCC	3 cut(s)	550, 1573, 2026
Lsp1109I	GCAGC	5 cut(s)	367, 690, 821, 878, 1999
LweI	GCATC	1 cut(s)	870
MaeI	CTAG	5 cut(s)	126, 827, 1761, 2009, 2103
MaeII	ACGT	3 cut(s)	1447, 1923, 2154
MaeIII	GTNAC	1 cut(s)	482
MfeI	CAATTG	1 cut(s)	1472
MflI	RGATCY	5 cut(s)	449, 1199, 1412, 1619, 1732
MhlI	GDGCHC	4 cut(s)	1086, 1429, 1851, 2031
MlsI	TGGCCA	1 cut(s)	1505
MluNI	TGGCCA	1 cut(s)	1505
MmeI	TCCRAC	2 cut(s)	1366, 1760
Mox20I	TGGCCA	1 cut(s)	1505
MscI	TGGCCA	1 cut(s)	1505
MseI	TTAA	8 cut(s)	174, 768, 915, 1229, 1314, 1451, 1553, 2087
MslI	CAYNNNNRTG	1 cut(s)	1068
Msp20I	TGGCCA	1 cut(s)	1505
MspA1I	CMGCKG	1 cut(s)	703
MspI	CCGG	3 cut(s)	1277, 1409, 1571
MspR9I	CCNGG	8 cut(s)	720, 1214, 1409, 1410, 1572, 1730, 1782, 1976
MunI	CAATTG	1 cut(s)	1472
MvaI	CCWGG	5 cut(s)	720, 1214, 1730, 1782, 1976
MwoI	GCNNNNNNNGC	3 cut(s)	712, 900, 1991
NciI	CCSGG	3 cut(s)	1409, 1410, 1572
NdeI	CATATG	1 cut(s)	205
NlaIII	CATG	7 cut(s)	637, 868, 1067, 1090, 1385, 2019, 2173
NlaIV	GGNNCC	4 cut(s)	1201, 1428, 1734, 1869
NspI	RCATGY	1 cut(s)	2019
PagI	TCATGA	1 cut(s)	1063
PaqCI	CACCTGC	1 cut(s)	1123
PcsI	WCGNNNNNNNCGW	1 cut(s)	2151
PfeI	GAWTC	5 cut(s)	311, 424, 554, 884, 1109
PfoI	TCCNGGA	2 cut(s)	1728, 1974
PkrI	GCNGC	6 cut(s)	357, 705, 836, 893, 2014, 2058
Ppu21I	YACGTR	1 cut(s)	1924
PshBI	ATTAAT	1 cut(s)	2087
Psp6I	CCWGG	5 cut(s)	718, 1212, 1728, 1780, 1974
PspGI	CCWGG	5 cut(s)	718, 1212, 1728, 1780, 1974
PspN4I	GGNNCC	4 cut(s)	1201, 1428, 1734, 1869
PspPI	GGNCC	1 cut(s)	1868
PstNI	CAGNNNCTG	2 cut(s)	947, 977
PsuI	RGATCY	5 cut(s)	449, 1199, 1412, 1619, 1732
PvuII	CAGCTG	1 cut(s)	703
RsaI	GTAC	8 cut(s)	20, 430, 699, 1054, 1152, 1169, 1543, 1966
RsaNI	GTAC	8 cut(s)	19, 429, 698, 1053, 1151, 1168, 1542, 1965
RseI	CAYNNNNRTG	1 cut(s)	1068
SaqAI	TTAA	8 cut(s)	174, 768, 915, 1229, 1314, 1451, 1553, 2087
SatI	GCNGC	6 cut(s)	356, 704, 835, 892, 2013, 2057
Sau96I	GGNCC	1 cut(s)	1868
ScaI	AGTACT	2 cut(s)	1543, 1966
ScrFI	CCNGG	8 cut(s)	720, 1214, 1409, 1410, 1572, 1730, 1782, 1976
SduI	GDGCHC	4 cut(s)	1086, 1429, 1851, 2031
SfaNI	GCATC	1 cut(s)	870
SinI	GGWCC	1 cut(s)	1868
SmaI	CCCGGG	1 cut(s)	1410
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SmlI	CTYRAG	1 cut(s)	1347
SmoI	CTYRAG	1 cut(s)	1347
SpeI	ACTAGT	1 cut(s)	2102
SsiI	CCGC	4 cut(s)	645, 1144, 2057, 2186
SspMI	CTAG	5 cut(s)	126, 827, 1761, 2009, 2103
StyD4I	CCNGG	8 cut(s)	718, 1212, 1407, 1408, 1570, 1728, 1780, 1974
StyI	CCWWGG	1 cut(s)	1373
TaiI	ACGT	3 cut(s)	1450, 1926, 2157
TaqI	TCGA	1 cut(s)	759
TatI	WGTACW	4 cut(s)	697, 1052, 1541, 1964
TauI	GCSGC	1 cut(s)	2059
TfiI	GAWTC	5 cut(s)	311, 424, 554, 884, 1109
Tru1I	TTAA	8 cut(s)	174, 768, 915, 1229, 1314, 1451, 1553, 2087
Tru9I	TTAA	8 cut(s)	174, 768, 915, 1229, 1314, 1451, 1553, 2087
TscAI	CASTG	2 cut(s)	1326, 2044
TseI	GCWGC	5 cut(s)	355, 703, 834, 891, 2012
TspDTI	ATGAA	9 cut(s)	17, 222, 252, 297, 1080, 1370, 1515, 2052, 2115
TspGWI	ACGGA	1 cut(s)	1623
TspMI	CCCGGG	1 cut(s)	1408
TspRI	CASTG	2 cut(s)	1326, 2044
VpaK11BI	GGWCC	1 cut(s)	1868
VspI	ATTAAT	1 cut(s)	2087
XapI	RAATTY	4 cut(s)	269, 678, 783, 1522
XceI	RCATGY	1 cut(s)	2019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1861
XmaI	CCCGGG	1 cut(s)	1408
XmiI	GTMKAC	1 cut(s)	1183
XspI	CTAG	5 cut(s)	126, 827, 1761, 2009, 2103
ZrmI	AGTACT	2 cut(s)	1543, 1966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.