Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8126688.1

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Reverse (-)

22 .. 579

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8126688.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggacagtaacctgcctgtgagagagaagaacaagaaaaaaaggccaaacaaaaggaggagagttgttgctccatccgattcagattttgtgtcttctggatcatctgactgtgattacaccatttctgaggaagagagagagcaagtgagggaagccaggcagttgtgcggaagtttggaacctaatttcagaagctcaatactgcctgacaaaattcaggagaatgagagaaagcctcctggtaggaaaggtaaagaaaaggttgagcaagtgcaggtcgaggtggttaagcaggtctgtggaatttgtctctctgaggaagataagagaagagtcaggggaacactagactgctgcactcattatttttgtttttcctgcatcatggaatggggcaaagtggaatctcgctgcccgttatgcaagcagaggtttaaagcaattagtaaacccacaagagcaggaactgatttgagagacgtggtgataacagtccctgagcgtgatcaggtaccttatcactttacttacattgtgttgtgctttatcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

185

Amino Acids

21.39

Weight (kDa)

8.86

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	21, 268, 286
Acc65I	GGTACC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	514
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	216, 306
AfaI	GTAC	1 cut(s)	516
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	158, 241
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	317, 474
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	2 cut(s)	470, 500
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	357, 414
ApoI	RAATTY	2 cut(s)	216, 306
Asp718I	GGTACC	1 cut(s)	514
AsuHPI	GGTGA	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	344, 401
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	160, 243
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	317, 474
BfaI	CTAG	1 cut(s)	350
BfuAI	ACCTGC	3 cut(s)	21, 268, 286
BisI	GCNGC	2 cut(s)	358, 415
BlsI	GCNGC	2 cut(s)	359, 416
Bme1390I	CCNGG	2 cut(s)	160, 243
BmgBI	CACGTC	1 cut(s)	484
BmiI	GGNNCC	2 cut(s)	183, 516
BmrFI	CCNGG	2 cut(s)	160, 243
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu10I	CCTNAGC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	160, 243
BseGI	GGATG	1 cut(s)	74
BseMII	CTCAG	3 cut(s)	120, 309, 492
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	344, 401
BsgI	GTGCAG	2 cut(s)	296, 343
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	317, 474
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	101, 508
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	3 cut(s)	121, 310, 493
BspLI	GGNNCC	2 cut(s)	183, 516
BspMI	ACCTGC	3 cut(s)	21, 268, 286
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	514
BssMI	GATC	2 cut(s)	101, 508
Bst2UI	CCWGG	2 cut(s)	160, 243
Bst4CI	ACNGT	3 cut(s)	8, 113, 496
Bst6I	CTCTTC	2 cut(s)	129, 328
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	129, 318, 501
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	104, 511
BstMAI	GTCTC	2 cut(s)	317, 474
BstMBI	GATC	2 cut(s)	101, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNI	CCWGG	2 cut(s)	160, 243
BstSCI	CCNGG	2 cut(s)	158, 241
BstV1I	GCAGC	2 cut(s)	344, 401
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	46
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	74
BveI	ACCTGC	3 cut(s)	21, 268, 286
Cac8I	GCNNGC	1 cut(s)	428
CaiI	CAGNNNCTG	2 cut(s)	470, 500
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	4 cut(s)	46, 158, 198, 238
CviKI_1	RGCY	4 cut(s)	46, 158, 198, 238
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	3 cut(s)	129, 318, 501
DpnI	GATC	2 cut(s)	103, 510
DpnII	GATC	2 cut(s)	101, 508
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	129, 328
EarI	CTCTTC	2 cut(s)	129, 328
EcoRII	CCWGG	2 cut(s)	158, 241
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	1 cut(s)	391
FaiI	YATR	2 cut(s)	389, 424
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	358, 415
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	358, 415
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	2 cut(s)	358, 415
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	3 cut(s)	80, 336, 407
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	6 cut(s)	79, 85, 109, 130, 194, 319
Hpy188III	TCNNGA	2 cut(s)	99, 221
Hpy8I	GTNNAC	1 cut(s)	452
HpyCH4III	ACNGT	3 cut(s)	8, 113, 496
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	4 cut(s)	277, 360, 384, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	3 cut(s)	129, 318, 501
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	391
KpnI	GGTACC	1 cut(s)	518
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	101, 508
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	2 cut(s)	344, 401
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	103, 510
MboI	GATC	2 cut(s)	101, 508
MboII	GAAGA	5 cut(s)	40, 87, 146, 335, 345
MluCI	AATT	4 cut(s)	187, 216, 306, 444
MlyI	GAGTC	1 cut(s)	345
MnlI	CCTC	7 cut(s)	51, 124, 144, 249, 277, 313, 426
MseI	TTAA	2 cut(s)	291, 438
MspR9I	CCNGG	2 cut(s)	160, 243
MvaI	CCWGG	2 cut(s)	160, 243
MwoI	GCNNNNNNNGC	1 cut(s)	423
NdeII	GATC	2 cut(s)	101, 508
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	2 cut(s)	183, 516
PfeI	GAWTC	2 cut(s)	80, 407
PkrI	GCNGC	2 cut(s)	359, 416
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	158, 241
PspGI	CCWGG	2 cut(s)	158, 241
PspN4I	GGNNCC	2 cut(s)	183, 516
PstNI	CAGNNNCTG	2 cut(s)	470, 500
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	291, 438
SatI	GCNGC	2 cut(s)	358, 415
Sau3AI	GATC	2 cut(s)	101, 508
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	2 cut(s)	160, 243
SfaNI	GCATC	1 cut(s)	393
Sse9I	AATT	4 cut(s)	187, 216, 306, 444
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	158, 241
TaaI	ACNGT	3 cut(s)	8, 113, 496
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	282
TasI	AATT	4 cut(s)	187, 216, 306, 444
TfiI	GAWTC	2 cut(s)	80, 407
Tru1I	TTAA	2 cut(s)	291, 438
Tru9I	TTAA	2 cut(s)	291, 438
TseI	GCWGC	2 cut(s)	357, 414
XapI	RAATTY	2 cut(s)	216, 306
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.