Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006287

Physical Location & Seq

Genomic Coordinates Forward (+)

6109632 .. 6112487

Gene Structure 2856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGGTAAAGGGAGGGAAAGTTAGTTCCAAACGAAGAGTCAAGCCACGGATTCGGTCTGATTATAAGGGTTCAGATGATTCGGATGAAGATTATGTGGTTTCAGATGAAGAAAAGCTAGTTTCTGAGGATTTGGAGGAGGATTATTGCTCCTCTTTGGATGAGAATGCATCAGAAGAGATTGGTAGTTTTGCAAAGGAGGAAGAGGAAGAGAGCTGGGGGAGAAAGAACAGTAGATCAAGAGCGAAAAAGGGTGTTGGTAGATCAAGAGCAAAAAAGGGTATTGATAGATCTATTGAGGACGAAGAGGTGGAGGATGAGCTGGAGGAGGAGGAGGAAGATGAGGAGGAAATGAAAAAGGTGAGAAAGAACGGTAGATCAAGAGTGAAAAAGGGTAAAGATATATTTATTGCGGATGAGGAGGAGGATGAGCTGGAGGAGGAAGAAGAAGAAGAGGAAAAGGCAATGAAAGAGGTGAGGAAGGTGGCTAGATCACAGTCCCAAAACGGTTTCTCTGGAAGGCTGAAAAATAGGGTTAAAACATCACAAAAGAGGAGAAGGGCTACATTTGAAGACATGGCAGATGAGGATTATGATGATGAAGAAGATGATGACGACGACTACGATGAGGAATCTGATGAAGATGATTTTTCAGAATCGGAAGAAGAATCAAGGGTGAAAAAGAAGAAAACTAATGTGAAAGTGGGCAAGCGGCGTTTGAAGAAAAAAGTTCCTGTAAGAAGAAAATCAAAGAAGCCTTTGAGAAAGAAACAAAAAAAGAATCGTACATTGAGGAGGAAAGTAAGATCTGATGATGATGATGGTGATTTTATGGACAGTAACCTGCCTGTGAGAGAGAAGAACAAGAAAAAAAGGCCAAACAAAAGGAGGAGAGTTGTTGCTCCATCCGATTCAGATTTTGTGTCTTCTGGATCATCTGACTGTGATTACACCATTTCTGAGGAAGAGAGAGAGCAAGTGAGGGAAGCCAGGCAGTTGTGCGGAAGTTTGGAACCTAATTTCAGAAGCTCAATACTGCCTGACAAAATTCAGGTGAATGAGAGAAAGCCTCCTGGTAGGAAAGGTAAAGAAAAGGTTGAGCAAGTGCAGGTCGAGGTGGTTAAGCAGGTCTGTGGAATTTGTCTCTCTGAGGAAGATAAGAGAAGAGTCAGGGGAACACTAGACTGCTGCACTCATTATTTTTGTTTTTCCTGCATCATGGAATGGGGCAAAGTGGAATCTCGCTGCCCGTTATGCAAGCAGAGGTTTAAAGCAATTAGTAAACCCACAAGAGCAGGAACTGATTTGAGAGACGTGGTGATAACAGTCCCTGAGCGTGATCAGGTTTATCAGCCGACAGAAGAAGAACTGAGAAGTTATCTTGACCCTTATGAGAATGTGATTTGTACAGAATGTCATGAAGGTGGAGAAGATGGGCTCATGCTACTGTGTGATGTGTGCGATTCACCTGCTCACACCTATTGTGTTGGTCTTGGGCGGGAGGTACCCGAAGGTAATTGGTACTGTAATGGTTGTAGACCTGTTGCTCTGGGATCCTCAAGTTCCCAGGTTCAAGGTTGGTTACCTGAGCAGAGAATTACAAACAACATCTTGCCTAATAGACAATCACCTGCTTTAAGTTTTGGTGAAGGTTTAGAGATAGACCTTAATTCAGTGTCCTCTCCTCGTTCCTATATTACTCAAGGATTTGGGAACTCCTCCTCCCCTTGGTTTCATGTTGGAGGTTTTCAAGTAGCTTCCCCGGGATCTGGGGCAGGGGCACCAACTCTGTCAGGAAGACGTTTAATGCACCGTCATATTCAGCAATTGATTACTGCTAATAGAATGAATTATTTGGCCAGTAGAAATGAGAGGAATTCATCTGCTAATTTGAGTACTGATGTCTTAAATGCTCAAACTGCTCAGGGGAGGGAAACAGTAGTTCAGCATACAAGGACAGACGGAATGGACAGATCTTTTCACACATTCATTGAGGAGAGATTACAAGAAAACCCCTCACTACAAGTGCAGGATAATGATATCTTTTTGTCAACATCAAGCCATCAGAGAAGGCAAGTAGTCCAGGATCCAACTACAACTTCTGCTGCTAGACCTAGCAATGGAACATTATGGCCTCGACTTACAGAGAATACAATATCAGGTCCCCCTCACTTCAGCAGTATATCCGATGGTGGTTTCTCCCCCAATACAGTTATGGGACCAAGTGATTTTCACAGAGCAAAGGAACAACTGCAATCATTGGTCATAAGCCACGTAAAAAACTTATCCCGAGATAGGGATTTAGGCCAAAGTACTACTACTTTCCAGGAGATCGCAAGGAGTGCTATGCACACTGTCCTAGCTGCATGTGAACTGGAGCACACAGGCAGTGAGGTAGTTCCCGTGCCGCCTTCATCACCGTGCCCTCACATTGAATTAATGGCAGGAAAGACAAGTCTGATGAGAGGTTGCTGTTCATCTTGTTTTGCACAGTTCGTTGAGGACGTGGTAAAGAAGGTCATGGAATACAGACTACCGCCGTGGTTGAGATTAGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

852

Amino Acids

96.65

Weight (kDa)

5.66

Isoelectric Point (pI)

74.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	376 - 419	8.5e-07	Ring finger domain
PHD	PF00628	468 - 511	6.9e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05670 AT3G05670 AT3G05670
fragaria_vesca	FvH4_6g07080
malus_domestica	MD04G1196300.v1.1 MD12G1209300.v1.1
prunus_persica	Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1 Prupe.6G316500_v2.0.a1
pyrus_communis	pycom04g17360 pycom12g19660
rosa_chinensis	RchiOBHm_Chr3g0456661
rosa_laevigata	RLG00000025286
rosa_multiflora	Rmu_co8126688.1_g000001 Rmu_sc0000133.1_g000031
rosa_roxburghii	Rroxscaffold_11G00450420 Rroxscaffold_6G00422560
rosa_rugosa	Rorug03G0014500 Rorug03G0014600 Rorug03G0014700 Rorug03G0014800.1
rosa_samantha	Rh3AG075300 Rh3BG077200 Rh3CG076900 Rh3DG078900
rosa_wichuraiana	Rw3G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	2 cut(s)	1474, 1636
Acc36I	ACCTGC	5 cut(s)	849, 1096, 1114, 1474, 1636
Acc65I	GGTACC	1 cut(s)	1501
AccB1I	GGYRCC	2 cut(s)	1501, 1777
AccI	GTMKAC	1 cut(s)	1534
AciI	CCGC	6 cut(s)	410, 709, 999, 1495, 2405, 2534
AclWI	GGATC	6 cut(s)	937, 1545, 1558, 1771, 2078, 2091
AcoI	YGGCCR	1 cut(s)	1854
AcsI	RAATTY	3 cut(s)	1044, 1134, 1873
AcuI	CTGAAG	1 cut(s)	2155
AfaI	GTAC	6 cut(s)	784, 1405, 1503, 1520, 1894, 2311
AfiI	CCNNNNNNNGG	5 cut(s)	1725, 1766, 2117, 2292, 2293
AgsI	TTSAA	5 cut(s)	569, 718, 1571, 1748, 2432
AjiI	CACGTC	2 cut(s)	1312, 2503
AjnI	CCWGG	5 cut(s)	986, 1069, 1563, 2079, 2322
AjuI	GAANNNNNNNTTGG	2 cut(s)	2080, 2112
AloI	GAACNNNNNNTCC	4 cut(s)	7, 39, 1703, 1735
AluBI	AGCT	8 cut(s)	115, 213, 319, 430, 1026, 1754, 2360, 2552
AluI	AGCT	8 cut(s)	115, 213, 319, 430, 1026, 1754, 2360, 2552
Alw21I	GWGCWC	1 cut(s)	2379
Alw26I	GTCTC	2 cut(s)	1145, 1302
AlwI	GGATC	6 cut(s)	937, 1545, 1558, 1771, 2078, 2091
AlwNI	CAGNNNCTG	2 cut(s)	1298, 1328
Ama87I	CYCGRG	2 cut(s)	1759, 2286
AoxI	GGCC	4 cut(s)	872, 1854, 2129, 2302
ApeKI	GCWGC	4 cut(s)	1185, 1242, 2102, 2360
ApoI	RAATTY	3 cut(s)	1044, 1134, 1873
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AseI	ATTAAT	1 cut(s)	2435
Asp718I	GGTACC	1 cut(s)	1501
AspS9I	GGNCC	2 cut(s)	2159, 2216
AsuC2I	CCSGG	2 cut(s)	1760, 1761
AvaI	CYCGRG	2 cut(s)	1759, 2286
AvaII	GGWCC	2 cut(s)	2159, 2216
BaeGI	GKGCMC	2 cut(s)	1780, 2423
BalI	TGGCCA	1 cut(s)	1856
BamHI	GGATCC	2 cut(s)	1550, 2083
BanI	GGYRCC	2 cut(s)	1501, 1777
BanII	GRGCYC	1 cut(s)	1437
BbsI	GAAGAC	3 cut(s)	576, 915, 1801
Bbv12I	GWGCWC	1 cut(s)	2379
BbvI	GCAGC	4 cut(s)	1172, 1229, 2089, 2347
BccI	CCATC	5 cut(s)	812, 910, 1424, 2067, 2180
BceAI	ACGGC	1 cut(s)	2521
BcgI	CGANNNNNNTGC	2 cut(s)	1448, 1482
BciT130I	CCWGG	5 cut(s)	988, 1071, 1565, 2081, 2324
BclI	TGATCA	1 cut(s)	1336
BcnI	CCSGG	2 cut(s)	1760, 1761
BcoDI	GTCTC	2 cut(s)	1145, 1302
BfaI	CTAG	6 cut(s)	116, 486, 1178, 2106, 2112, 2357
BfuAI	ACCTGC	5 cut(s)	849, 1096, 1114, 1474, 1636
BglII	AGATCT	3 cut(s)	287, 803, 1970
BisI	GCNGC	6 cut(s)	710, 1186, 1243, 2103, 2361, 2405
BlsI	GCNGC	6 cut(s)	711, 1187, 1244, 2104, 2362, 2406
BmcAI	AGTACT	2 cut(s)	1894, 2311
Bme1390I	CCNGG	7 cut(s)	988, 1071, 1565, 1760, 1761, 2081, 2324
Bme18I	GGWCC	2 cut(s)	2159, 2216
BmeT110I	CYCGRG	2 cut(s)	1759, 2286
BmgBI	CACGTC	2 cut(s)	1312, 2503
BmgT120I	GGNCC	2 cut(s)	2159, 2216
BmiI	GGNNCC	7 cut(s)	1011, 1503, 1552, 1779, 2085, 2161, 2217
BmrFI	CCNGG	7 cut(s)	988, 1071, 1565, 1760, 1761, 2081, 2324
BmsI	GCATC	2 cut(s)	176, 1221
BpiI	GAAGAC	3 cut(s)	576, 915, 1801
BplI	GAGNNNNNCTC	3 cut(s)	1051, 1083, 2536
BpmI	CTGGAG	3 cut(s)	341, 452, 2393
Bpu10I	CCTNAGC	3 cut(s)	1329, 1584, 1920
BpuEI	CTTGAG	2 cut(s)	1540, 1683
BpuMI	CCSGG	2 cut(s)	1760, 1761
BsaAI	YACGTR	1 cut(s)	2272
BsaJI	CCNNGG	6 cut(s)	44, 1563, 1724, 1758, 1759, 2537
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 1703, 1733
Bsc4I	CCNNNNNNNGG	5 cut(s)	1725, 1766, 2117, 2292, 2293
Bse1I	ACTGG	2 cut(s)	1857, 2376
Bse3DI	GCAATG	2 cut(s)	468, 2122
BseBI	CCWGG	5 cut(s)	988, 1071, 1565, 2081, 2324
BseDI	CCNNGG	6 cut(s)	44, 1563, 1724, 1758, 1759, 2537
BseGI	GGATG	6 cut(s)	88, 163, 319, 418, 430, 902
BseLI	CCNNNNNNNGG	5 cut(s)	1725, 1766, 2117, 2292, 2293
BseMI	GCAATG	2 cut(s)	468, 2122
BseMII	CTCAG	7 cut(s)	114, 948, 1137, 1320, 1358, 1575, 1934
BseNI	ACTGG	2 cut(s)	1857, 2376
BseSI	GKGCMC	2 cut(s)	1780, 2423
BseXI	GCAGC	4 cut(s)	1172, 1229, 2089, 2347
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	3 cut(s)	1124, 1171, 2045
BshFI	GGCC	4 cut(s)	874, 1856, 2131, 2304
BshNI	GGYRCC	2 cut(s)	1501, 1777
BsiHKAI	GWGCWC	1 cut(s)	2379
BsiHKCI	CYCGRG	2 cut(s)	1759, 2286
BsiSI	CCGG	1 cut(s)	1760
BslFI	GGGAC	4 cut(s)	481, 1310, 2145, 2229
BslI	CCNNNNNNNGG	5 cut(s)	1725, 1766, 2117, 2292, 2293
BsmAI	GTCTC	2 cut(s)	1145, 1302
BsmBI	CGTCTC	1 cut(s)	1302
BsmFI	GGGAC	4 cut(s)	481, 1310, 2145, 2229
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	874, 1856, 2131, 2304
BsoBI	CYCGRG	2 cut(s)	1759, 2286
Bsp1286I	GDGCHC	4 cut(s)	1437, 1780, 2379, 2423
Bsp1407I	TGTACA	1 cut(s)	1403
BspACI	CCGC	6 cut(s)	410, 709, 999, 1495, 2405, 2534
BspANI	GGCC	4 cut(s)	874, 1856, 2131, 2304
BspCNI	CTCAG	7 cut(s)	115, 949, 1138, 1321, 1359, 1576, 1933
BspHI	TCATGA	1 cut(s)	1414
BspLI	GGNNCC	7 cut(s)	1011, 1503, 1552, 1779, 2085, 2161, 2217
BspMI	ACCTGC	5 cut(s)	849, 1096, 1114, 1474, 1636
BspPI	GGATC	6 cut(s)	937, 1545, 1558, 1771, 2078, 2091
BspT107I	GGYRCC	2 cut(s)	1501, 1777
BsrDI	GCAATG	2 cut(s)	468, 2122
BsrGI	TGTACA	1 cut(s)	1403
BsrI	ACTGG	2 cut(s)	1857, 2376
BssECI	CCNNGG	6 cut(s)	44, 1563, 1724, 1758, 1759, 2537
BssT1I	CCWWGG	1 cut(s)	1724
Bst2UI	CCWGG	5 cut(s)	988, 1071, 1565, 2081, 2324
Bst6I	CTCTTC	8 cut(s)	28, 168, 195, 201, 297, 444, 957, 1156
BstAPI	GCANNNNNTGC	1 cut(s)	2339
BstAUI	TGTACA	1 cut(s)	1403
BstBAI	YACGTR	1 cut(s)	2272
BstC8I	GCNNGC	2 cut(s)	707, 1256
BstDEI	CTNAG	7 cut(s)	123, 957, 1146, 1329, 1367, 1584, 1920
BstDSI	CCRYGG	2 cut(s)	44, 2537
BstEII	GGTNACC	1 cut(s)	1578
BstF5I	GGATG	6 cut(s)	88, 163, 319, 418, 430, 902
BstMAI	GTCTC	2 cut(s)	1145, 1302
BstMWI	GCNNNNNNNGC	3 cut(s)	1251, 1916, 2339
BstNI	CCWGG	5 cut(s)	988, 1071, 1565, 2081, 2324
BstNSI	RCATGY	1 cut(s)	2367
BstPI	GGTNACC	1 cut(s)	1578
BstSCI	CCNGG	7 cut(s)	986, 1069, 1563, 1758, 1759, 2079, 2322
BstSLI	GKGCMC	2 cut(s)	1780, 2423
BstV1I	GCAGC	4 cut(s)	1172, 1229, 2089, 2347
BstV2I	GAAGAC	3 cut(s)	576, 915, 1801
BstX2I	RGATCY	6 cut(s)	287, 803, 1550, 1763, 1970, 2083
BstYI	RGATCY	6 cut(s)	287, 803, 1550, 1763, 1970, 2083
BsuRI	GGCC	4 cut(s)	874, 1856, 2131, 2304
BtgI	CCRYGG	2 cut(s)	44, 2537
BtrI	CACGTC	2 cut(s)	1312, 2503
BtsCI	GGATG	6 cut(s)	88, 163, 319, 418, 430, 902
BtsI	GCAGTG	1 cut(s)	2392
BtsIMutI	CAGTG	3 cut(s)	1677, 2349, 2392
BveI	ACCTGC	5 cut(s)	849, 1096, 1114, 1474, 1636
Cac8I	GCNNGC	2 cut(s)	707, 1256
CaiI	CAGNNNCTG	2 cut(s)	1298, 1328
CciI	TCATGA	1 cut(s)	1414
Cfr13I	GGNCC	2 cut(s)	2159, 2216
Cfr9I	CCCGGG	1 cut(s)	1759
Csp6I	GTAC	6 cut(s)	783, 1404, 1502, 1519, 1893, 2310
CviAII	CATG	7 cut(s)	574, 1216, 1415, 1438, 1733, 2364, 2518
CviQI	GTAC	6 cut(s)	783, 1404, 1502, 1519, 1893, 2310
DdeI	CTNAG	7 cut(s)	123, 957, 1146, 1329, 1367, 1584, 1920
DraI	TTTAAA	1 cut(s)	1267
EaeI	YGGCCR	1 cut(s)	1854
Eam1104I	CTCTTC	8 cut(s)	28, 168, 195, 201, 297, 444, 957, 1156
EarI	CTCTTC	8 cut(s)	28, 168, 195, 201, 297, 444, 957, 1156
Eco130I	CCWWGG	1 cut(s)	1724
Eco24I	GRGCYC	1 cut(s)	1437
Eco32I	GATATC	1 cut(s)	2038
Eco47I	GGWCC	2 cut(s)	2159, 2216
Eco57I	CTGAAG	1 cut(s)	2155
Eco88I	CYCGRG	2 cut(s)	1759, 2286
Eco91I	GGTNACC	1 cut(s)	1578
EcoO109I	RGGNCCY	1 cut(s)	2159
EcoO65I	GGTNACC	1 cut(s)	1578
EcoRI	GAATTC	1 cut(s)	1873
EcoRII	CCWGG	5 cut(s)	986, 1069, 1563, 2079, 2322
EcoRV	GATATC	1 cut(s)	2038
EcoT14I	CCWWGG	1 cut(s)	1724
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	1437
ErhI	CCWWGG	1 cut(s)	1724
Esp3I	CGTCTC	1 cut(s)	1302
FaeI	CATG	7 cut(s)	577, 1219, 1418, 1441, 1736, 2367, 2521
FaqI	GGGAC	4 cut(s)	481, 1310, 2145, 2229
FatI	CATG	7 cut(s)	573, 1215, 1414, 1437, 1732, 2363, 2517
FauI	CCCGC	1 cut(s)	1488
FbaI	TGATCA	1 cut(s)	1336
FblI	GTMKAC	1 cut(s)	1534
Fnu4HI	GCNGC	6 cut(s)	710, 1186, 1243, 2103, 2361, 2405
FokI	GGATG	6 cut(s)	95, 170, 326, 425, 437, 889
FriOI	GRGCYC	1 cut(s)	1437
Fsp4HI	GCNGC	6 cut(s)	710, 1186, 1243, 2103, 2361, 2405
FspBI	CTAG	6 cut(s)	116, 486, 1178, 2106, 2112, 2357
GluI	GCNGC	6 cut(s)	710, 1186, 1243, 2103, 2361, 2405
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	3 cut(s)	341, 452, 2393
HaeIII	GGCC	4 cut(s)	874, 1856, 2131, 2304
HapII	CCGG	1 cut(s)	1760
Hin1II	CATG	7 cut(s)	577, 1219, 1418, 1441, 1736, 2367, 2521
HincII	GTYRAC	1 cut(s)	2049
HindII	GTYRAC	1 cut(s)	2049
HpaII	CCGG	1 cut(s)	1760
Hpy166II	GTNNAC	4 cut(s)	1280, 1535, 2049, 2369
Hpy188III	TCNNGA	9 cut(s)	237, 264, 378, 513, 927, 1379, 1415, 1791, 2286
Hpy8I	GTNNAC	4 cut(s)	1280, 1535, 2049, 2369
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	9 cut(s)	472, 510, 549, 1412, 1502, 1640, 2061, 2418, 2506
HpyCH4IV	ACGT	4 cut(s)	1311, 1798, 2271, 2502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1251, 1916, 2339
HpyF3I	CTNAG	7 cut(s)	123, 957, 1146, 1329, 1367, 1584, 1920
HpySE526I	ACGT	4 cut(s)	1311, 1798, 2271, 2502
Hsp92II	CATG	7 cut(s)	577, 1219, 1418, 1441, 1736, 2367, 2521
KpnI	GGTACC	1 cut(s)	1505
Ksp22I	TGATCA	1 cut(s)	1336
LmnI	GCTCC	3 cut(s)	152, 904, 2374
Lsp1109I	GCAGC	4 cut(s)	1172, 1229, 2089, 2347
LweI	GCATC	2 cut(s)	176, 1221
MaeI	CTAG	6 cut(s)	116, 486, 1178, 2106, 2112, 2357
MaeII	ACGT	4 cut(s)	1311, 1798, 2271, 2502
MaeIII	GTNAC	2 cut(s)	836, 1578
MfeI	CAATTG	1 cut(s)	1823
MflI	RGATCY	6 cut(s)	287, 803, 1550, 1763, 1970, 2083
MhlI	GDGCHC	4 cut(s)	1437, 1780, 2379, 2423
MlsI	TGGCCA	1 cut(s)	1856
MluNI	TGGCCA	1 cut(s)	1856
MlyI	GAGTC	2 cut(s)	45, 1173
MmeI	TCCRAC	2 cut(s)	1717, 2111
Mox20I	TGGCCA	1 cut(s)	1856
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	1856
MseI	TTAA	8 cut(s)	534, 1119, 1266, 1634, 1665, 1802, 1904, 2435
MslI	CAYNNNNRTG	2 cut(s)	1419, 2416
Msp20I	TGGCCA	1 cut(s)	1856
MspI	CCGG	1 cut(s)	1760
MspR9I	CCNGG	7 cut(s)	988, 1071, 1565, 1760, 1761, 2081, 2324
MunI	CAATTG	1 cut(s)	1823
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	5 cut(s)	988, 1071, 1565, 2081, 2324
MwoI	GCNNNNNNNGC	3 cut(s)	1251, 1916, 2339
NciI	CCSGG	2 cut(s)	1760, 1761
NlaIII	CATG	7 cut(s)	577, 1219, 1418, 1441, 1736, 2367, 2521
NlaIV	GGNNCC	7 cut(s)	1011, 1503, 1552, 1779, 2085, 2161, 2217
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	2367
PagI	TCATGA	1 cut(s)	1414
PaqCI	CACCTGC	2 cut(s)	1474, 1636
PcsI	WCGNNNNNNNCGW	2 cut(s)	618, 2499
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	9 cut(s)	49, 77, 629, 653, 665, 778, 908, 1235, 1460
PfoI	TCCNGGA	2 cut(s)	2079, 2322
PkrI	GCNGC	6 cut(s)	711, 1187, 1244, 2104, 2362, 2406
PleI	GAGTC	2 cut(s)	44, 1172
PpsI	GAGTC	2 cut(s)	44, 1172
Ppu21I	YACGTR	1 cut(s)	2272
PpuMI	RGGWCCY	1 cut(s)	2159
PshBI	ATTAAT	1 cut(s)	2435
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	2159
Psp6I	CCWGG	5 cut(s)	986, 1069, 1563, 2079, 2322
PspEI	GGTNACC	1 cut(s)	1578
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	5 cut(s)	986, 1069, 1563, 2079, 2322
PspN4I	GGNNCC	7 cut(s)	1011, 1503, 1552, 1779, 2085, 2161, 2217
PspPI	GGNCC	2 cut(s)	2159, 2216
PspPPI	RGGWCCY	1 cut(s)	2159
PstNI	CAGNNNCTG	2 cut(s)	1298, 1328
PsuI	RGATCY	6 cut(s)	287, 803, 1550, 1763, 1970, 2083
RsaI	GTAC	6 cut(s)	784, 1405, 1503, 1520, 1894, 2311
RsaNI	GTAC	6 cut(s)	783, 1404, 1502, 1519, 1893, 2310
RseI	CAYNNNNRTG	2 cut(s)	1419, 2416
SaqAI	TTAA	8 cut(s)	534, 1119, 1266, 1634, 1665, 1802, 1904, 2435
SatI	GCNGC	6 cut(s)	710, 1186, 1243, 2103, 2361, 2405
Sau96I	GGNCC	2 cut(s)	2159, 2216
ScaI	AGTACT	2 cut(s)	1894, 2311
SchI	GAGTC	2 cut(s)	45, 1173
ScrFI	CCNGG	7 cut(s)	988, 1071, 1565, 1760, 1761, 2081, 2324
SduI	GDGCHC	4 cut(s)	1437, 1780, 2379, 2423
SfaNI	GCATC	2 cut(s)	176, 1221
SinI	GGWCC	2 cut(s)	2159, 2216
SmaI	CCCGGG	1 cut(s)	1761
SmiMI	CAYNNNNRTG	2 cut(s)	1419, 2416
SmlI	CTYRAG	2 cut(s)	1555, 1698
SmoI	CTYRAG	2 cut(s)	1555, 1698
SsiI	CCGC	6 cut(s)	410, 709, 999, 1495, 2405, 2534
SspMI	CTAG	6 cut(s)	116, 486, 1178, 2106, 2112, 2357
StyD4I	CCNGG	7 cut(s)	986, 1069, 1563, 1758, 1759, 2079, 2322
StyI	CCWWGG	1 cut(s)	1724
TaiI	ACGT	4 cut(s)	1314, 1801, 2274, 2505
TaqI	TCGA	2 cut(s)	1110, 2134
TaqII	GACCGA	1 cut(s)	42
TatI	WGTACW	3 cut(s)	1403, 1892, 2309
TauI	GCSGC	2 cut(s)	712, 2407
TfiI	GAWTC	9 cut(s)	49, 77, 629, 653, 665, 778, 908, 1235, 1460
Tru1I	TTAA	8 cut(s)	534, 1119, 1266, 1634, 1665, 1802, 1904, 2435
Tru9I	TTAA	8 cut(s)	534, 1119, 1266, 1634, 1665, 1802, 1904, 2435
TscAI	CASTG	3 cut(s)	1677, 2356, 2392
TseI	GCWGC	4 cut(s)	1185, 1242, 2102, 2360
TspGWI	ACGGA	2 cut(s)	61, 1974
TspMI	CCCGGG	1 cut(s)	1759
TspRI	CASTG	3 cut(s)	1677, 2356, 2392
VpaK11BI	GGWCC	2 cut(s)	2159, 2216
VspI	ATTAAT	1 cut(s)	2435
XapI	RAATTY	3 cut(s)	1044, 1134, 1873
XceI	RCATGY	1 cut(s)	2367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2209
XmaI	CCCGGG	1 cut(s)	1759
XmiI	GTMKAC	1 cut(s)	1534
XspI	CTAG	6 cut(s)	116, 486, 1178, 2106, 2112, 2357
ZrmI	AGTACT	2 cut(s)	1894, 2311
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.