pycom12g19830

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0006178
Physical Location & Seq
Reverse (-)
21532433 .. 21533630
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGGGACTTCGCCTACTTGACCAGCTTTGGGACGACACCGTCGCCGGGCCGCAGCCCGACAGCGGTCTCGGGAAACTGCGGAAGCACAAAACCTTCAGTTTCCGGTCCAGCGCCGCCACTGGATCGTCAGATGGCGGGAACGTACGATCGTACGGTGAGAATTCAACGGAGGAGGCGAAAGTTACGAGGAGTATCATGATTATTAAGCCCCCAGGTTATGGGAGCGGTAACGGCGGATCAGCTCCTGTTTCGCCAGCTGGGTTCACGCCTCCGGCTTCGCCAGCCGGGTCTACGCCGCCGGTGTCCCCATTTTCTGGTGGCAGGGAGCCATTCGGGCGGTTTCGAAGAAGGTCAGCATCGGATGCATACGAGAAGGCGAGCGAGGTCGCTGGAGCAAGGAGCGCCCGTTCTCCTTACGACGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

142

Amino Acids

14.65

Weight (kDa)

9.81

Isoelectric Point (pI)

77.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 9 - 97 1.4e-09 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccB7I CCANNNNNTGG 2 cut(s) 218, 314
AccBSI CCGCTC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 290
AciI CCGC 9 cut(s) 50, 63, 79, 114, 135, 225, 234, 296, 337
AclWI GGATC 2 cut(s) 130, 244
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 79
AfaI GTAC 2 cut(s) 144, 152
AfiI CCNNNNNNNGG 5 cut(s) 28, 45, 62, 218, 314
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 1 cut(s) 165
AjiI CACGTC 1 cut(s) 421
AjnI CCWGG 1 cut(s) 211
AloI GAACNNNNNNTCC 2 cut(s) 391, 423
AluBI AGCT 3 cut(s) 25, 242, 257
AluI AGCT 3 cut(s) 25, 242, 257
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 130, 244
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 2 cut(s) 113, 404
AspS9I GGNCC 2 cut(s) 47, 105
AsuC2I CCSGG 2 cut(s) 46, 286
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 2 cut(s) 46, 286
BcoDI GTCTC 1 cut(s) 71
BfoI RGCGCY 2 cut(s) 114, 405
BglI GCCNNNNNGGC 1 cut(s) 334
BisI GCNGC 4 cut(s) 50, 53, 114, 296
BlsI GCNGC 4 cut(s) 51, 54, 115, 297
Bme1390I CCNGG 3 cut(s) 46, 213, 286
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 47, 105
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 3 cut(s) 46, 213, 286
BmsI GCATC 2 cut(s) 352, 365
BoxI GACNNNNGTC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 343
BpuMI CCSGG 2 cut(s) 46, 286
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 45, 62, 218, 314
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 5 cut(s) 28, 45, 62, 218, 314
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 185, 202
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 5 cut(s) 45, 103, 272, 285, 299
BsiWI CGTACG 2 cut(s) 142, 150
BslFI GGGAC 3 cut(s) 18, 44, 289
BslI CCNNNNNNNGG 5 cut(s) 28, 45, 62, 218, 314
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 3 cut(s) 18, 44, 289
BsnI GGCC 1 cut(s) 49
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 343
Bsp143I GATC 3 cut(s) 122, 146, 236
BspACI CCGC 9 cut(s) 50, 63, 79, 114, 135, 225, 234, 296, 337
BspANI GGCC 1 cut(s) 49
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 2 cut(s) 130, 244
BspT104I TTCGAA 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 3 cut(s) 122, 146, 236
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 40, 155
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 3 cut(s) 255, 282, 379
BstF5I GGATG 1 cut(s) 367
BstH2I RGCGCY 2 cut(s) 114, 405
BstHHI GCGC 2 cut(s) 113, 404
BstKTI GATC 3 cut(s) 125, 149, 239
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 122, 146, 236
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 5 cut(s) 231, 281, 334, 362, 401
BstNI CCWGG 1 cut(s) 213
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 3 cut(s) 44, 211, 284
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 49
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 3 cut(s) 255, 282, 379
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 113, 404
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 47, 105
Csp6I GTAC 2 cut(s) 143, 151
CviAII CATG 1 cut(s) 196
CviJI RGCY 9 cut(s) 25, 49, 55, 208, 242, 257, 275, 284, 328
CviKI_1 RGCY 9 cut(s) 25, 49, 55, 208, 242, 257, 275, 284, 328
CviQI GTAC 2 cut(s) 143, 151
DpnI GATC 3 cut(s) 124, 148, 238
DpnII GATC 3 cut(s) 122, 146, 236
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 367
FaeI CATG 1 cut(s) 199
FaiI YATR 3 cut(s) 197, 219, 367
FaqI GGGAC 3 cut(s) 18, 44, 289
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 4 cut(s) 50, 53, 114, 296
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 50, 53, 114, 296
GlaI GCGC 2 cut(s) 112, 403
GluI GCNGC 4 cut(s) 50, 53, 114, 296
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 2 cut(s) 114, 405
HaeIII GGCC 1 cut(s) 49
HapII CCGG 5 cut(s) 45, 103, 272, 285, 299
HhaI GCGC 2 cut(s) 113, 404
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 2 cut(s) 111, 402
HinP1I GCGC 2 cut(s) 111, 402
HpaII CCGG 5 cut(s) 45, 103, 272, 285, 299
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 264, 291
Hpy188I TCNGA 2 cut(s) 130, 361
Hpy188III TCNNGA 2 cut(s) 70, 196
Hpy8I GTNNAC 2 cut(s) 264, 291
Hpy99I CGWCG 2 cut(s) 44, 422
HpyAV CCTTC 3 cut(s) 103, 342, 367
HpyCH4III ACNGT 2 cut(s) 40, 155
HpyCH4IV ACGT 2 cut(s) 141, 420
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 231, 281, 334, 362, 401
HpySE526I ACGT 2 cut(s) 141, 420
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 2 cut(s) 111, 402
Kzo9I GATC 3 cut(s) 122, 146, 236
LmnI GCTCC 5 cut(s) 222, 247, 325, 392, 399
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 352, 365
MaeII ACGT 2 cut(s) 141, 420
MaeIII GTNAC 2 cut(s) 181, 227
MalI GATC 3 cut(s) 124, 148, 238
MbiI CCGCTC 1 cut(s) 225
MboI GATC 3 cut(s) 122, 146, 236
MboII GAAGA 1 cut(s) 357
MluCI AATT 1 cut(s) 160
MnlI CCTC 5 cut(s) 163, 166, 180, 279, 376
Mph1103I ATGCAT 1 cut(s) 367
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 63, 257
MspI CCGG 5 cut(s) 45, 103, 272, 285, 299
MspR9I CCNGG 3 cut(s) 46, 213, 286
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 5 cut(s) 231, 281, 334, 362, 401
NciI CCSGG 2 cut(s) 46, 286
NdeII GATC 3 cut(s) 122, 146, 236
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 327
NsiI ATGCAT 1 cut(s) 367
NspV TTCGAA 1 cut(s) 343
PagI TCATGA 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 173
Pfl23II CGTACG 2 cut(s) 142, 150
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 2 cut(s) 218, 314
PkrI GCNGC 4 cut(s) 51, 54, 115, 297
Ple19I CGATCG 1 cut(s) 149
PshAI GACNNNNGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 211
PspLI CGTACG 2 cut(s) 142, 150
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 2 cut(s) 47, 105
PstNI CAGNNNCTG 1 cut(s) 245
PsyI GACNNNGTC 1 cut(s) 38
PvuI CGATCG 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 2 cut(s) 144, 152
RsaNI GTAC 2 cut(s) 143, 151
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 4 cut(s) 50, 53, 114, 296
Sau3AI GATC 3 cut(s) 122, 146, 236
Sau96I GGNCC 2 cut(s) 47, 105
ScrFI CCNGG 3 cut(s) 46, 213, 286
SetI ASST 9 cut(s) 27, 95, 144, 217, 244, 259, 353, 387, 423
SfaNI GCATC 2 cut(s) 352, 365
SfuI TTCGAA 1 cut(s) 343
SgrAI CRCCGGYG 1 cut(s) 298
SinI GGWCC 1 cut(s) 105
Sse9I AATT 1 cut(s) 160
SsiI CCGC 9 cut(s) 50, 63, 79, 114, 135, 225, 234, 296, 337
StyD4I CCNGG 3 cut(s) 44, 211, 284
TaaI ACNGT 2 cut(s) 40, 155
TaiI ACGT 2 cut(s) 144, 423
TaqI TCGA 1 cut(s) 343
TasI AATT 1 cut(s) 160
TauI GCSGC 3 cut(s) 52, 116, 298
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 52
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 2 cut(s) 218, 314
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.