Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Forward (+)

6102182 .. 6105275

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09120.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGACAGTTTTTAGTTTAAACCCTAATGCAAGCAAGCAAATACCAAATGCAACCAACACATTGAAACCATTGCCGGTCTTCTTCCATCCCCTCATAGCTTCGAAATCCCAACCTTATTCGGTAATGGCACTGGTACCTCACAATAAGGGTGTCAACCCAACAAGCAGAGACGGCGACCGTAATCGCGCTCCTCTGCTTAAAGATGGGCGCGACGGACATCGACGGTATTCGACAACAGCTGATGACACTGCATTGGTCAACCAAATTATGCTTACTGATAAATCTCATGACCATCCCTACGAAGTGCCTTCTCTTGCAGTCACACAAATTCTTCAAACCATTGAGGCCATTCTTTCGCGCGTCACGAAACCTGACATCCATGATGGCACTCTAGTCCCGGGAGCATTAGTACCAGCTGCTAAACATGCGGATGCTTTGGAGCATGGGAAGGCCCTCCATGCTAGCCTGAGTACCCTCCACGACAGCTTCGATGTTCCAAGCACCGTGTTCAATGCGATTCAATGCGAGTTAATGTCCAAATCGCTGCAAGGGGAAGATGCAAACAAGACCGCAATGGACATACTAGACATTGTGCAACACTACGATTGGGATGAAAAGGTGGTGCTTGCCTTGGGAGCATTTGCGATCAAAGATGGCGAGTTTTGGCTCCTGGCTCAGCAATACACCACCAACCCACTCGCCAAAGCGGTTGGACAGATTAAGCAACTGCACGAGATCTTGGAACGTGCGGGGACTAGTTTGAAATCGAAGTTTGATGCATACAACAATCTGGTTAGGGTCATATTCAAAGTGACCAGGACCATTGTTCACTTACAGGAGATTCACAACGACCCCCATTTGAGCCCCGAACTCAAAGCTACAGCTGCCACTGCTCATATCCCAACAGCTGTTTACTGGACAATTCGGGCTATTATAGTTGCTGCATCACAACTTCTGGGTATCACAGGCTCCGAGCCAGAGTACGTGACAGAGGTGTGGGAACTATCATCGCTGGCCCATAAGCTCGAAAACATATTCGATCACCTTGAAGAGATCCTCGACAGATTACATCAACTTATCCGTAAGAACAAAGAGGAGGATGCCTTCAATGCAATTGCACGCATCTTGGAAACACCACACATCGATAACTCAAAGCCTCTGAAGGTTTTGTTTTACAAGGATGATCAGCCTGCACTCTATGATTGCTACAACAAGAAGAGGGTTGACATTGATGTGCTAAAGAGGAAAGTGGTGATTTTGTTCATCACAGACCTAGACGTTATCCACGAAAACGAGTACATGATTGTCCAACAAATGTACTTGGAAAAACAACACAACCCTACAAGGCCGGAGAGCCAGTACGAGGTTGTGTGGGTTCCAATTACAGATGTGTGGACTGAAGCCAAGTACCAGCAATTCGAGAGCCTAAGAAATAACATGGAATGGTACACCGTGTTCCACCCTTCGGTGGTGTCTCCGATTATGGTGAGGTACATCAGGGACCCGAGGAAGTGGAATTTTGCCAAGAAGCCTCTGCTTGTTGTGATGGATCCTCAAGGCAAAATTGTGCACAAGAATGCTGTCCACATGATGTGCATTTGGGGAAGCATTGCCTTCCCTTTCACTAGCCAGAAAGAGAGAATGCTTTGGGAAGAAGAAACATGGAGGATTGAGCTTTTGGCTGATGCCCTTGATCAAAACTTATATACTTGGATCACGGATAGGAAGTACATTTGTTTGTATGGCGGAGAAGACATCGAGTGGATCCGAAACTTCACAAGGGCAGCGAAAAACGTGGCTCTTGAAGCCGGGATTCAGTTGGAATTGCTTTATGTGGGGAAGAGTAAGGCTAAGGAGAAAGTCGTGAAGAACATCATCAACATCATTCAAACTGAGAAGCTAAGCCACACCCTTGAGGTGAACCTCATTTGGTTCTTCTGGATTCGTCTCGAGAGCATGTGGCAGTCCAAAGGACAAATCCTAAGCGAGCAAAGCAGAACCCAAACTGATCACTTGAAAAGCGATCCCATAATGCAGGGGATCATATCGATGCTGAGCTTTGGCTCGAGCGACCGCGGATGGGCAGTGATCGCCTTTGGCTCAGCAGACATGTCCAAGGCCAACGGGGAGCACATGTTGAGAAGCTTGAGGGAGTACAACAACTGGAAAATAAGGCCAACTGAAATAGGGTTTATCCCGGCACTGAATGAATACCTAGAAGGGGTGCATAAACAGGCTCCACACCACTGCACTAGTCTTATTTTGCCTGCAACCGGAATCATGCCTGAGACAGTTGCCTGCGCTGAGTGCGGCCGTCTCATGGAGAGGTTCTCCATGTTCCGCTGCTGCACCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

786

Amino Acids

89.61

Weight (kDa)

6.35

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	133
AccII	CGCG	5 cut(s)	186, 210, 358, 360, 2076
AciI	CCGC	9 cut(s)	428, 570, 707, 749, 1746, 2074, 2076, 2310, 2341
AclWI	GGATC	8 cut(s)	1048, 1544, 1557, 1721, 1759, 1772, 2018, 2048
AcoI	YGGCCR	1 cut(s)	2311
AcsI	RAATTY	2 cut(s)	327, 1516
AcuI	CTGAAG	2 cut(s)	1181, 1419
AfiI	CCNNNNNNNGG	7 cut(s)	1363, 1465, 1468, 2080, 2221, 2273, 2320
AflIII	ACRYGT	2 cut(s)	2109, 2133
AhlI	ACTAGT	2 cut(s)	755, 2252
AjnI	CCWGG	2 cut(s)	669, 815
Alw21I	GWGCWC	2 cut(s)	1572, 2133
Alw26I	GTCTC	5 cut(s)	162, 1479, 1952, 2282, 2321
Alw44I	GTGCAC	1 cut(s)	1568
AlwI	GGATC	8 cut(s)	1048, 1544, 1557, 1721, 1759, 1772, 2018, 2048
Ama87I	CYCGRG	4 cut(s)	397, 1504, 1949, 2065
AoxI	GGCC	7 cut(s)	345, 450, 1014, 1346, 2118, 2174, 2311
ApaLI	GTGCAC	1 cut(s)	1568
ApeKI	GCWGC	7 cut(s)	416, 544, 884, 941, 1784, 2343, 2346
ApoI	RAATTY	2 cut(s)	327, 1516
Asp718I	GGTACC	1 cut(s)	133
AspLEI	GCGC	4 cut(s)	188, 210, 360, 2303
AspS9I	GGNCC	4 cut(s)	451, 819, 1015, 1501
AsuC2I	CCSGG	4 cut(s)	398, 399, 1810, 2198
AsuHPI	GGTGA	4 cut(s)	1034, 1264, 1498, 1930
AsuII	TTCGAA	1 cut(s)	101
AsuNHI	GCTAGC	1 cut(s)	461
AvaI	CYCGRG	4 cut(s)	397, 1504, 1949, 2065
AvaII	GGWCC	2 cut(s)	819, 1501
BaeGI	GKGCMC	1 cut(s)	1572
BamHI	GGATCC	2 cut(s)	1549, 1764
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	866
BauI	CACGAG	1 cut(s)	731
BbsI	GAAGAC	2 cut(s)	70, 1758
Bbv12I	GWGCWC	2 cut(s)	1572, 2133
BbvI	GCAGC	7 cut(s)	403, 531, 871, 928, 1796, 2330, 2333
BccI	CCATC	7 cut(s)	93, 197, 300, 377, 647, 1540, 2073
BceAI	ACGGC	2 cut(s)	187, 2298
BciT130I	CCWGG	2 cut(s)	671, 817
BclI	TGATCA	3 cut(s)	1183, 1693, 2008
BcnI	CCSGG	4 cut(s)	398, 399, 1810, 2198
BcoDI	GTCTC	5 cut(s)	162, 1479, 1952, 2282, 2321
BcuI	ACTAGT	2 cut(s)	755, 2252
BfaI	CTAG	8 cut(s)	392, 462, 584, 756, 1274, 1626, 2216, 2253
BfmI	CTRYAG	1 cut(s)	879
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	8 cut(s)	417, 545, 885, 942, 1785, 2311, 2344, 2347
BlpI	GCTNAGC	4 cut(s)	675, 1901, 2054, 2101
BlsI	GCNGC	8 cut(s)	418, 546, 886, 943, 1786, 2312, 2345, 2348
Bme1390I	CCNGG	6 cut(s)	398, 399, 671, 817, 1810, 2198
Bme18I	GGWCC	2 cut(s)	819, 1501
BmeT110I	CYCGRG	4 cut(s)	397, 1504, 1949, 2065
BmgT120I	GGNCC	4 cut(s)	451, 819, 1015, 1501
BmiI	GGNNCC	9 cut(s)	135, 668, 970, 1377, 1502, 1503, 1551, 1766, 2238
BmrFI	CCNGG	6 cut(s)	398, 399, 671, 817, 1810, 2198
BmsI	GCATC	8 cut(s)	421, 547, 766, 953, 1090, 1131, 1675, 2040
BmtI	GCTAGC	1 cut(s)	465
BpiI	GAAGAC	2 cut(s)	70, 1758
BplI	GAGNNNNNCTC	2 cut(s)	2315, 2347
Bpu10I	CCTNAGC	2 cut(s)	1851, 1982
Bpu1102I	GCTNAGC	4 cut(s)	675, 1901, 2054, 2101
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	3 cut(s)	1539, 1934, 2167
BpuMI	CCSGG	4 cut(s)	398, 399, 1810, 2198
Bsa29I	ATCGAT	2 cut(s)	1143, 2048
BsaAI	YACGTR	1 cut(s)	985
BsaJI	CCNNGG	5 cut(s)	397, 630, 1505, 2074, 2115
BsaWI	WCCGGW	1 cut(s)	2273
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 1343, 1373, 2120, 2150
Bsc4I	CCNNNNNNNGG	7 cut(s)	1363, 1465, 1468, 2080, 2221, 2273, 2320
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	4 cut(s)	135, 920, 1357, 2168
Bse3DI	GCAATG	3 cut(s)	68, 579, 1608
BseBI	CCWGG	2 cut(s)	671, 817
BseCI	ATCGAT	2 cut(s)	1143, 2048
BseDI	CCNNGG	5 cut(s)	397, 630, 1505, 2074, 2115
BseGI	GGATG	8 cut(s)	85, 292, 375, 436, 616, 1105, 1186, 2084
BseLI	CCNNNNNNNGG	7 cut(s)	1363, 1465, 1468, 2080, 2221, 2273, 2320
BseMI	GCAATG	3 cut(s)	68, 579, 1608
BseMII	CTCAG	7 cut(s)	458, 689, 1884, 2045, 2115, 2277, 2295
BseNI	ACTGG	4 cut(s)	135, 920, 1357, 2168
BseRI	GAGGAG	2 cut(s)	180, 1109
BseSI	GKGCMC	1 cut(s)	1572
BseX3I	CGGCCG	1 cut(s)	2311
BseXI	GCAGC	7 cut(s)	403, 531, 871, 928, 1796, 2330, 2333
BsgI	GTGCAG	4 cut(s)	713, 1176, 2233, 2332
Bsh1236I	CGCG	5 cut(s)	186, 210, 358, 360, 2076
Bsh1285I	CGRYCG	3 cut(s)	178, 2074, 2314
BshFI	GGCC	7 cut(s)	347, 452, 1016, 1348, 2120, 2176, 2313
BshNI	GGYRCC	1 cut(s)	133
BshVI	ATCGAT	2 cut(s)	1143, 2048
BsiEI	CGRYCG	3 cut(s)	178, 2074, 2314
BsiHKAI	GWGCWC	2 cut(s)	1572, 2133
BsiHKCI	CYCGRG	4 cut(s)	397, 1504, 1949, 2065
BsiSI	CCGG	6 cut(s)	74, 398, 1349, 1809, 2198, 2274
BslFI	GGGAC	3 cut(s)	380, 766, 1514
BslI	CCNNNNNNNGG	7 cut(s)	1363, 1465, 1468, 2080, 2221, 2273, 2320
BsmAI	GTCTC	5 cut(s)	162, 1479, 1952, 2282, 2321
BsmBI	CGTCTC	3 cut(s)	162, 1952, 2321
BsmFI	GGGAC	3 cut(s)	380, 766, 1514
BsmI	GAATGC	2 cut(s)	1582, 1647
BsnI	GGCC	7 cut(s)	347, 452, 1016, 1348, 2120, 2176, 2313
BsoBI	CYCGRG	4 cut(s)	397, 1504, 1949, 2065
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	866, 1572, 2133
Bsp1720I	GCTNAGC	4 cut(s)	675, 1901, 2054, 2101
BspACI	CCGC	9 cut(s)	428, 570, 707, 749, 1746, 2074, 2076, 2310, 2341
BspANI	GGCC	7 cut(s)	347, 452, 1016, 1348, 2120, 2176, 2313
BspCNI	CTCAG	7 cut(s)	459, 688, 1885, 2046, 2114, 2278, 2296
BspDI	ATCGAT	2 cut(s)	1143, 2048
BspFNI	CGCG	5 cut(s)	186, 210, 358, 360, 2076
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	9 cut(s)	135, 668, 970, 1377, 1502, 1503, 1551, 1766, 2238
BspOI	GCTAGC	1 cut(s)	465
BspPI	GGATC	8 cut(s)	1048, 1544, 1557, 1721, 1759, 1772, 2018, 2048
BspT104I	TTCGAA	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	3 cut(s)	68, 579, 1608
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	4 cut(s)	135, 920, 1357, 2168
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	5 cut(s)	397, 630, 1505, 2074, 2115
BssSI	CACGAG	1 cut(s)	731
BssT1I	CCWWGG	2 cut(s)	630, 2115
Bst2BI	CACGAG	1 cut(s)	731
Bst2UI	CCWGG	2 cut(s)	671, 817
Bst4CI	ACNGT	6 cut(s)	7, 179, 225, 505, 1453, 2293
Bst6I	CTCTTC	3 cut(s)	1044, 1211, 1835
BstBAI	YACGTR	1 cut(s)	985
BstBI	TTCGAA	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	2074
BstF5I	GGATG	8 cut(s)	85, 292, 375, 436, 616, 1105, 1186, 2084
BstFNI	CGCG	5 cut(s)	186, 210, 358, 360, 2076
BstHHI	GCGC	4 cut(s)	188, 210, 360, 2303
BstMAI	GTCTC	5 cut(s)	162, 1479, 1952, 2282, 2321
BstMCI	CGRYCG	3 cut(s)	178, 2074, 2314
BstNI	CCWGG	2 cut(s)	671, 817
BstNSI	RCATGY	4 cut(s)	428, 1960, 2113, 2137
BstSCI	CCNGG	6 cut(s)	396, 397, 669, 815, 1808, 2196
BstSFI	CTRYAG	1 cut(s)	879
BstSLI	GKGCMC	1 cut(s)	1572
BstUI	CGCG	5 cut(s)	186, 210, 358, 360, 2076
BstV1I	GCAGC	7 cut(s)	403, 531, 871, 928, 1796, 2330, 2333
BstV2I	GAAGAC	2 cut(s)	70, 1758
BstX2I	RGATCY	4 cut(s)	735, 1053, 1549, 1764
BstYI	RGATCY	4 cut(s)	735, 1053, 1549, 1764
BstZI	CGGCCG	1 cut(s)	2311
Bsu15I	ATCGAT	2 cut(s)	1143, 2048
BsuRI	GGCC	7 cut(s)	347, 452, 1016, 1348, 2120, 2176, 2313
BsuTUI	ATCGAT	2 cut(s)	1143, 2048
BtgI	CCRYGG	1 cut(s)	2074
BtgZI	GCGATG	1 cut(s)	993
BtsCI	GGATG	8 cut(s)	85, 292, 375, 436, 616, 1105, 1186, 2084
BtsI	GCAGTG	4 cut(s)	246, 888, 2091, 2245
BtsIMutI	CAGTG	6 cut(s)	128, 246, 888, 2091, 2201, 2245
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	4 cut(s)	188, 210, 360, 2303
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	4 cut(s)	451, 819, 1015, 1501
Cfr42I	CCGCGG	1 cut(s)	2077
Cfr9I	CCCGGG	1 cut(s)	397
ClaI	ATCGAT	2 cut(s)	1143, 2048
CseI	GACGC	1 cut(s)	349
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	2311
EagI	CGGCCG	1 cut(s)	2311
Eam1104I	CTCTTC	3 cut(s)	1044, 1211, 1835
EarI	CTCTTC	3 cut(s)	1044, 1211, 1835
EciI	GGCGGA	1 cut(s)	1761
EclXI	CGGCCG	1 cut(s)	2311
Eco130I	CCWWGG	2 cut(s)	630, 2115
Eco24I	GRGCYC	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	819, 1501
Eco52I	CGGCCG	1 cut(s)	2311
Eco57I	CTGAAG	2 cut(s)	1181, 1419
Eco88I	CYCGRG	4 cut(s)	397, 1504, 1949, 2065
EcoO109I	RGGNCCY	2 cut(s)	451, 1501
EcoRII	CCWGG	2 cut(s)	669, 815
EcoT14I	CCWWGG	2 cut(s)	630, 2115
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	866
ErhI	CCWWGG	2 cut(s)	630, 2115
Esp3I	CGTCTC	3 cut(s)	162, 1952, 2321
FaqI	GGGAC	3 cut(s)	380, 766, 1514
FauI	CCCGC	1 cut(s)	742
FbaI	TGATCA	3 cut(s)	1183, 1693, 2008
Fnu4HI	GCNGC	8 cut(s)	417, 545, 885, 942, 1785, 2311, 2344, 2347
FokI	GGATG	8 cut(s)	72, 279, 362, 443, 623, 1112, 1193, 2091
FriOI	GRGCYC	1 cut(s)	866
Fsp4HI	GCNGC	8 cut(s)	417, 545, 885, 942, 1785, 2311, 2344, 2347
FspBI	CTAG	8 cut(s)	392, 462, 584, 756, 1274, 1626, 2216, 2253
GlaI	GCGC	4 cut(s)	187, 209, 359, 2302
GluI	GCNGC	8 cut(s)	417, 545, 885, 942, 1785, 2311, 2344, 2347
HaeIII	GGCC	7 cut(s)	347, 452, 1016, 1348, 2120, 2176, 2313
HapII	CCGG	6 cut(s)	74, 398, 1349, 1809, 2198, 2274
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	4 cut(s)	188, 210, 360, 2303
Hin6I	GCGC	4 cut(s)	186, 208, 358, 2301
HinP1I	GCGC	4 cut(s)	186, 208, 358, 2301
HincII	GTYRAC	3 cut(s)	154, 259, 1225
HindII	GTYRAC	3 cut(s)	154, 259, 1225
HindIII	AAGCTT	1 cut(s)	2143
HinfI	GANTC	5 cut(s)	517, 841, 1813, 1942, 2277
HpaII	CCGG	6 cut(s)	74, 398, 1349, 1809, 2198, 2274
HphI	GGTGA	4 cut(s)	1034, 1264, 1498, 1930
Hpy188I	TCNGA	4 cut(s)	973, 1161, 1479, 1769
Hpy188III	TCNNGA	8 cut(s)	287, 364, 1420, 1802, 1864, 1939, 1949, 1951
Hpy99I	CGWCG	2 cut(s)	215, 225
HpyAV	CCTTC	7 cut(s)	318, 442, 1114, 1156, 1473, 1624, 2213
HpyCH4III	ACNGT	6 cut(s)	7, 179, 225, 505, 1453, 2293
HpyCH4IV	ACGT	4 cut(s)	745, 984, 1278, 1794
HpySE526I	ACGT	4 cut(s)	745, 984, 1278, 1794
HspAI	GCGC	4 cut(s)	186, 208, 358, 2301
KflI	GGGWCCC	1 cut(s)	1501
KpnI	GGTACC	1 cut(s)	137
Ksp22I	TGATCA	3 cut(s)	1183, 1693, 2008
KspI	CCGCGG	1 cut(s)	2077
LmnI	GCTCC	8 cut(s)	193, 401, 439, 635, 672, 974, 2128, 2242
Lsp1109I	GCAGC	7 cut(s)	403, 531, 871, 928, 1796, 2330, 2333
LweI	GCATC	8 cut(s)	421, 547, 766, 953, 1090, 1131, 1675, 2040
MaeI	CTAG	8 cut(s)	392, 462, 584, 756, 1274, 1626, 2216, 2253
MaeII	ACGT	4 cut(s)	745, 984, 1278, 1794
MaeIII	GTNAC	4 cut(s)	319, 361, 811, 985
MfeI	CAATTG	1 cut(s)	1113
MflI	RGATCY	4 cut(s)	735, 1053, 1549, 1764
MhlI	GDGCHC	3 cut(s)	866, 1572, 2133
MluCI	AATT	9 cut(s)	264, 327, 921, 1113, 1380, 1415, 1516, 1563, 1823
MmeI	TCCRAC	3 cut(s)	691, 1333, 1800
Mph1103I	ATGCAT	1 cut(s)	781
MseI	TTAA	4 cut(s)	17, 198, 530, 720
MslI	CAYNNNNRTG	4 cut(s)	429, 1232, 1575, 2048
MspA1I	CMGCKG	6 cut(s)	239, 416, 884, 908, 2076, 2343
MspI	CCGG	6 cut(s)	74, 398, 1349, 1809, 2198, 2274
MspR9I	CCNGG	6 cut(s)	398, 399, 671, 817, 1810, 2198
MssI	GTTTAAAC	1 cut(s)	18
MunI	CAATTG	1 cut(s)	1113
Mva1269I	GAATGC	2 cut(s)	1582, 1647
MvaI	CCWGG	2 cut(s)	671, 817
MvnI	CGCG	5 cut(s)	186, 210, 358, 360, 2076
NciI	CCSGG	4 cut(s)	398, 399, 1810, 2198
NheI	GCTAGC	1 cut(s)	461
NlaIV	GGNNCC	9 cut(s)	135, 668, 970, 1377, 1502, 1503, 1551, 1766, 2238
NmuCI	GTSAC	4 cut(s)	319, 361, 811, 985
NsiI	ATGCAT	1 cut(s)	781
NspI	RCATGY	4 cut(s)	428, 1960, 2113, 2137
NspV	TTCGAA	1 cut(s)	101
PaeR7I	CTCGAG	2 cut(s)	1949, 2065
PagI	TCATGA	1 cut(s)	286
PciI	ACATGT	2 cut(s)	2109, 2133
PcsI	WCGNNNNNNNCGW	3 cut(s)	362, 486, 1284
PctI	GAATGC	2 cut(s)	1582, 1647
PfeI	GAWTC	5 cut(s)	517, 841, 1813, 1942, 2277
PkrI	GCNGC	8 cut(s)	418, 546, 886, 943, 1786, 2312, 2345, 2348
PmeI	GTTTAAAC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	985
PpuMI	RGGWCCY	1 cut(s)	1501
PscI	ACATGT	2 cut(s)	2109, 2133
Psp5II	RGGWCCY	1 cut(s)	1501
Psp6I	CCWGG	2 cut(s)	669, 815
PspGI	CCWGG	2 cut(s)	669, 815
PspN4I	GGNNCC	9 cut(s)	135, 668, 970, 1377, 1502, 1503, 1551, 1766, 2238
PspPI	GGNCC	4 cut(s)	451, 819, 1015, 1501
PspPPI	RGGWCCY	1 cut(s)	1501
PspXI	VCTCGAGB	1 cut(s)	2065
PsrI	GAACNNNNNNTAC	2 cut(s)	1439, 1471
PsuI	RGATCY	4 cut(s)	735, 1053, 1549, 1764
PvuII	CAGCTG	4 cut(s)	239, 416, 884, 908
RseI	CAYNNNNRTG	4 cut(s)	429, 1232, 1575, 2048
SacII	CCGCGG	1 cut(s)	2077
SaqAI	TTAA	4 cut(s)	17, 198, 530, 720
SatI	GCNGC	8 cut(s)	417, 545, 885, 942, 1785, 2311, 2344, 2347
Sau96I	GGNCC	4 cut(s)	451, 819, 1015, 1501
ScrFI	CCNGG	6 cut(s)	398, 399, 671, 817, 1810, 2198
SduI	GDGCHC	3 cut(s)	866, 1572, 2133
SfaNI	GCATC	8 cut(s)	421, 547, 766, 953, 1090, 1131, 1675, 2040
SfcI	CTRYAG	1 cut(s)	879
Sfr274I	CTCGAG	2 cut(s)	1949, 2065
Sfr303I	CCGCGG	1 cut(s)	2077
SfuI	TTCGAA	1 cut(s)	101
SgrBI	CCGCGG	1 cut(s)	2077
SinI	GGWCC	2 cut(s)	819, 1501
SlaI	CTCGAG	2 cut(s)	1949, 2065
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	4 cut(s)	429, 1232, 1575, 2048
SmlI	CTYRAG	5 cut(s)	1554, 1913, 1949, 2065, 2146
SmoI	CTYRAG	5 cut(s)	1554, 1913, 1949, 2065, 2146
SpeI	ACTAGT	2 cut(s)	755, 2252
Sse9I	AATT	9 cut(s)	264, 327, 921, 1113, 1380, 1415, 1516, 1563, 1823
SsiI	CCGC	9 cut(s)	428, 570, 707, 749, 1746, 2074, 2076, 2310, 2341
SspMI	CTAG	8 cut(s)	392, 462, 584, 756, 1274, 1626, 2216, 2253
StyD4I	CCNGG	6 cut(s)	396, 397, 669, 815, 1808, 2196
StyI	CCWWGG	2 cut(s)	630, 2115
TaaI	ACNGT	6 cut(s)	7, 179, 225, 505, 1453, 2293
TaiI	ACGT	4 cut(s)	748, 987, 1281, 1797
TasI	AATT	9 cut(s)	264, 327, 921, 1113, 1380, 1415, 1516, 1563, 1823
TatI	WGTACW	4 cut(s)	1296, 1317, 1728, 2154
TauI	GCSGC	1 cut(s)	2313
TfiI	GAWTC	5 cut(s)	517, 841, 1813, 1942, 2277
Tru1I	TTAA	4 cut(s)	17, 198, 530, 720
Tru9I	TTAA	4 cut(s)	17, 198, 530, 720
TscAI	CASTG	6 cut(s)	135, 253, 895, 2091, 2208, 2252
TseFI	GTSAC	4 cut(s)	319, 361, 811, 985
TseI	GCWGC	7 cut(s)	416, 544, 884, 941, 1784, 2343, 2346
Tsp45I	GTSAC	4 cut(s)	319, 361, 811, 985
TspDTI	ATGAA	3 cut(s)	627, 1252, 2223
TspGWI	ACGGA	3 cut(s)	228, 1070, 1733
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	6 cut(s)	135, 253, 895, 2091, 2208, 2252
VneI	GTGCAC	1 cut(s)	1568
VpaK11BI	GGWCC	2 cut(s)	819, 1501
XapI	RAATTY	2 cut(s)	327, 1516
XceI	RCATGY	4 cut(s)	428, 1960, 2113, 2137
XhoI	CTCGAG	2 cut(s)	1949, 2065
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	8 cut(s)	392, 462, 584, 756, 1274, 1626, 2216, 2253
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.