Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Reverse (-)

53862302 .. 53865796

Gene Structure 3495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGACTGATAGATCGCATGAACGTCCCTACGATGTGCCTCTTCTATCTGTCAAGCAGGTTCTCCAAACAATCGAGGCCATTCTGGCTCGTGTCAACAAACCACTTGACATCCATGGCACTGTTGTTCCGGGAGGTCTCGTACCTGCAACTGCGAATGTGGATACTTTGGAACATGAGAAGGCCATCCATGCTAGCCTGAGTAGCCTCCACGACAGCATCGATGTTCCAACCAGCATTCTTAATGAAATTTCCAGCGAGATACTTAGCAAGTCGCTAACAGGGGTAGATGCAAGCAAGACCACCATGGATATTTTAGAGAGGGTCCAGCACTACGATTGGGACGAAAAGGTGGTGCTTGCCTTGGCATCTTTTGCGATCAAAGATGGTGAATTTTGGCTTGTGGCTCAGCTTTTCACCACCAACGCACTGGCCAAAGCCATCGGACAACTGAAGCAAATGCAAGAGATACTAGAACGATCTGGGACTAGTTTAAAACCGAAATTTGAAGCATACAACAATCTGGTTAGAGCCGTGCTCAAGGTGACCAAGATCATTGTTCATTTACAGGACCTTCACCGCGACCCCCACTTAACTGCTGAAATCAAAGCTACATCTCCCACTAATCATATCCCCACTGCTGTTTACTGGACTGTCAGGAGTATAGTCATTCTTGAATCACAACTTTTAGGGATCACTGGCTCTGATCCAGAGTACGTAACAGAGGCATGGGAACTATCATCCTTGGCACACAAGCTCGAAAACATATTCAACCATCTTGAGGAGAACCTAAACAGACTCTATCAACTCATTCAGAAGTTCAGAGATGAAGAAGCATTCAATGCAATTGCACGCATCTTAGAGTCACCACATATTGATAACTCCAAGCCTCTGAGGGTTTTGTTTTACAAGGATGACCAACCTGCACTCTATGATGGCTACAACAAGAAGAGGGTTGACATTGATGTGCTGAGGAGGAAGGTGGTGATACTGATGATTTCAGACCTGGACATCACCCAGGAAAATGAGTACCTGATTGCTCATCAAATGTACTCGGAGAAACGCCAGTTCCCACAAAGGCCAGAGAGCCAGTACGAGATTGTCTGGGTTCCAATTGTGGACAATTGGACTGAAGCCAAGCAGCTGCAGTTTGAGGAACTTAGAAATGGCATGGAATGGTACACTGTCTACCACCCTTCGGTTGTGTCTCCGATTGTGGTGAAGTACATCAGGCACCAGAAGAAATGGAACTTTGTGAAGAAGCCTCTGCTTGTGGTGATGGACCCTCAAGGCAAAATAGTGCACACCAATGCTGTTCACATGATGTGTGTTTTCGGAAGTGCAGCATACCCATTCACAAGCAACAGAGAGAGATTGCTCTGGGAAGAAGAGACCTGGAGGATTGAGCTTTTGGCAGATGCCATCGATCAAACTCTACTTAACTGGATTTCGGAAAGGAAGTACATTTGCTTGTATGGCGGGGAAGACATTAACTGGATCCGAAGCTTCACAAGGTCTGCAAAAGAAGTTGCCTTGGAAGCTGGTATCGAATTAGAGTTGCTCTATCTTGGCAAGAGCAAGCAGAAGGAGCGAGTGGCCAGGGACATCATCCGTGTTATTAAGGAGGAGAGGCTAAGCCACACCATCGACTGGAACCTCATTTGGTTCTTCTGGGTTCGTCTTGAGAGCATGTGGCAGTCCAAAGGACAGCTTATGAGTGAGCTGTCCAGGGCTAACTTCAGGGACGATAACATAAAAAACGACATCATAATGCAGGGGATTGTGTCACTGCTGAGCTTCGGTTCTAGCGATCGGGGTTGGGCTCTGATCGGGCTTCCTTCATCAGACATGTCTAAGGGTAATGGGGATCACATGTTGAAGAGCATGAACGACTTCAAGATTTGGAAGATTAGGCACAATGAGATGGGGTTCACTCCTGCACTGAATGAATATCTTCATGGGGTGTACAAGAGCGCCCCACATCACTGCACCAGTCTCATACTGCCTGCAACCGGCATCATGCCTGAGACGGTGGCCTGTGCTGAATGTGGTCGTCTCATGGAGAGGTACGCCATGTTCCGCTGCTGCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

697

Amino Acids

80.21

Weight (kDa)

6.09

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_N	PF14576	15 - 290	4.4e-67	Sieve element occlusion N-terminus
SEO_C	PF14577	455 - 696	3.1e-82	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	46, 151, 928
AccB1I	GGYRCC	1 cut(s)	1230
AccB7I	CCANNNNNTGG	1 cut(s)	1647
AccI	GTMKAC	1 cut(s)	1185
AccII	CGCG	1 cut(s)	579
AciI	CCGC	3 cut(s)	577, 1476, 2077
AclWI	GGATC	5 cut(s)	698, 698, 1489, 1502, 1872
AcoI	YGGCCR	2 cut(s)	429, 1593
AcsI	RAATTY	3 cut(s)	246, 389, 500
AcuI	CTGAAG	3 cut(s)	470, 1149, 1720
AfiI	CCNNNNNNNGG	4 cut(s)	778, 1195, 1647, 2009
AflIII	ACRYGT	2 cut(s)	1845, 1869
AgsI	TTSAA	6 cut(s)	506, 674, 769, 838, 1876, 1894
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	5 cut(s)	1002, 1014, 1391, 1595, 1724
Alw21I	GWGCWC	2 cut(s)	537, 1302
Alw26I	GTCTC	6 cut(s)	140, 1209, 1382, 1997, 2018, 2057
Alw44I	GTGCAC	1 cut(s)	1298
AlwI	GGATC	5 cut(s)	698, 698, 1489, 1502, 1872
AoxI	GGCC	6 cut(s)	75, 180, 429, 1076, 1593, 2031
ApaLI	GTGCAC	1 cut(s)	1298
ApeKI	GCWGC	5 cut(s)	1138, 1141, 1340, 2079, 2082
ApoI	RAATTY	3 cut(s)	246, 389, 500
Asp700I	GAANNNNTTC	2 cut(s)	1889, 1950
AspLEI	GCGC	1 cut(s)	1973
AspS9I	GGNCC	3 cut(s)	322, 568, 1279
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	9 cut(s)	398, 406, 553, 566, 855, 994, 1003, 1228, 1285
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	3 cut(s)	322, 568, 1279
BaeGI	GKGCMC	1 cut(s)	1302
BalI	TGGCCA	2 cut(s)	431, 1595
BamHI	GGATCC	1 cut(s)	1494
BanI	GGYRCC	1 cut(s)	1230
BanII	GRGCYC	1 cut(s)	1822
BauI	CACGAG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	1488
Bbv12I	GWGCWC	2 cut(s)	537, 1302
BbvCI	CCTCAGC	1 cut(s)	968
BbvI	GCAGC	5 cut(s)	1128, 1150, 1352, 2066, 2069
BccI	CCATC	9 cut(s)	191, 377, 446, 780, 926, 1270, 1427, 1649, 1915
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	5 cut(s)	1004, 1016, 1393, 1597, 1726
BciVI	GTATCC	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	6 cut(s)	140, 1209, 1382, 1997, 2018, 2057
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	4 cut(s)	192, 470, 486, 1803
BfmI	CTRYAG	1 cut(s)	1142
BfoI	RGCGCY	1 cut(s)	1974
BfuAI	ACCTGC	3 cut(s)	46, 151, 928
BfuI	GTATCC	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	5 cut(s)	1139, 1142, 1341, 2080, 2083
BlpI	GCTNAGC	3 cut(s)	405, 1631, 1790
BlsI	GCNGC	5 cut(s)	1140, 1143, 1342, 2081, 2084
Bme1390I	CCNGG	6 cut(s)	129, 1004, 1016, 1393, 1597, 1726
Bme18I	GGWCC	3 cut(s)	322, 568, 1279
BmgT120I	GGNCC	3 cut(s)	322, 568, 1279
BmiI	GGNNCC	6 cut(s)	323, 1107, 1232, 1281, 1496, 1652
BmrFI	CCNGG	6 cut(s)	129, 1004, 1016, 1393, 1597, 1726
BmsI	GCATC	6 cut(s)	225, 277, 374, 861, 1405, 2022
BmtI	GCTAGC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	1488
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
BpmI	CTGGAG	1 cut(s)	1414
Bpu10I	CCTNAGC	1 cut(s)	968
Bpu1102I	GCTNAGC	3 cut(s)	405, 1631, 1790
BpuEI	CTTGAG	4 cut(s)	521, 797, 1269, 1700
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	2 cut(s)	219, 1422
BsaAI	YACGTR	1 cut(s)	715
BsaI	GGTCTC	2 cut(s)	140, 1382
BsaJI	CCNNGG	8 cut(s)	112, 303, 360, 741, 1014, 1530, 1596, 1725
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	4 cut(s)	778, 1195, 1647, 2009
Bse118I	RCCGGY	1 cut(s)	2009
Bse1I	ACTGG	9 cut(s)	432, 650, 700, 1063, 1087, 1445, 1496, 1652, 1989
BseBI	CCWGG	5 cut(s)	1004, 1016, 1393, 1597, 1726
BseCI	ATCGAT	2 cut(s)	219, 1422
BseDI	CCNNGG	8 cut(s)	112, 303, 360, 741, 1014, 1530, 1596, 1725
BseGI	GGATG	5 cut(s)	108, 183, 737, 916, 1605
BseLI	CCNNNNNNNGG	4 cut(s)	778, 1195, 1647, 2009
BseMII	CTCAG	6 cut(s)	188, 419, 881, 959, 1781, 2013
BseNI	ACTGG	9 cut(s)	432, 650, 700, 1063, 1087, 1445, 1496, 1652, 1989
BseRI	GAGGAG	3 cut(s)	794, 985, 1637
BseSI	GKGCMC	1 cut(s)	1302
BseXI	GCAGC	5 cut(s)	1128, 1150, 1352, 2066, 2069
BsgI	GTGCAG	5 cut(s)	906, 1359, 1920, 1969, 2068
Bsh1236I	CGCG	1 cut(s)	579
Bsh1285I	CGRYCG	1 cut(s)	1810
BshFI	GGCC	6 cut(s)	77, 182, 431, 1078, 1595, 2033
BshNI	GGYRCC	1 cut(s)	1230
BshVI	ATCGAT	2 cut(s)	219, 1422
BsiEI	CGRYCG	1 cut(s)	1810
BsiHKAI	GWGCWC	2 cut(s)	537, 1302
BsiSI	CCGG	2 cut(s)	128, 2010
BslFI	GGGAC	5 cut(s)	9, 353, 496, 1613, 1754
BslI	CCNNNNNNNGG	4 cut(s)	778, 1195, 1647, 2009
BsmAI	GTCTC	6 cut(s)	140, 1209, 1382, 1997, 2018, 2057
BsmBI	CGTCTC	2 cut(s)	2018, 2057
BsmFI	GGGAC	5 cut(s)	9, 353, 496, 1613, 1754
BsmI	GAATGC	2 cut(s)	234, 833
BsnI	GGCC	6 cut(s)	77, 182, 431, 1078, 1595, 2033
Bso31I	GGTCTC	2 cut(s)	140, 1382
Bsp1286I	GDGCHC	3 cut(s)	537, 1302, 1822
Bsp1407I	TGTACA	1 cut(s)	1962
Bsp1720I	GCTNAGC	3 cut(s)	405, 1631, 1790
Bsp19I	CCATGG	2 cut(s)	112, 303
BspACI	CCGC	3 cut(s)	577, 1476, 2077
BspANI	GGCC	6 cut(s)	77, 182, 431, 1078, 1595, 2033
BspCNI	CTCAG	6 cut(s)	189, 418, 882, 960, 1782, 2014
BspDI	ATCGAT	2 cut(s)	219, 1422
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	6 cut(s)	323, 1107, 1232, 1281, 1496, 1652
BspMAI	CTGCAG	1 cut(s)	1146
BspMI	ACCTGC	3 cut(s)	46, 151, 928
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	5 cut(s)	698, 698, 1489, 1502, 1872
BspQI	GCTCTTC	1 cut(s)	1871
BspT107I	GGYRCC	1 cut(s)	1230
BspTNI	GGTCTC	2 cut(s)	140, 1382
BsrFI	RCCGGY	1 cut(s)	2009
BsrGI	TGTACA	1 cut(s)	1962
BsrI	ACTGG	9 cut(s)	432, 650, 700, 1063, 1087, 1445, 1496, 1652, 1989
BssAI	RCCGGY	1 cut(s)	2009
BssECI	CCNNGG	8 cut(s)	112, 303, 360, 741, 1014, 1530, 1596, 1725
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	5 cut(s)	112, 303, 360, 741, 1530
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	5 cut(s)	1004, 1016, 1393, 1597, 1726
Bst4CI	ACNGT	4 cut(s)	121, 652, 1183, 2029
Bst6I	CTCTTC	4 cut(s)	45, 941, 1380, 1871
BstAPI	GCANNNNNTGC	2 cut(s)	371, 839
BstAUI	TGTACA	1 cut(s)	1962
BstBAI	YACGTR	1 cut(s)	715
BstC8I	GCNNGC	6 cut(s)	193, 292, 357, 850, 1577, 2004
BstDSI	CCRYGG	2 cut(s)	112, 303
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	5 cut(s)	108, 183, 737, 916, 1605
BstFNI	CGCG	1 cut(s)	579
BstH2I	RGCGCY	1 cut(s)	1974
BstHHI	GCGC	1 cut(s)	1973
BstMAI	GTCTC	6 cut(s)	140, 1209, 1382, 1997, 2018, 2057
BstMCI	CGRYCG	1 cut(s)	1810
BstMWI	GCNNNNNNNGC	8 cut(s)	83, 188, 201, 371, 839, 1473, 1535, 1585
BstNI	CCWGG	5 cut(s)	1004, 1016, 1393, 1597, 1726
BstNSI	RCATGY	3 cut(s)	1690, 1849, 1873
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	6 cut(s)	127, 1002, 1014, 1391, 1595, 1724
BstSFI	CTRYAG	1 cut(s)	1142
BstSLI	GKGCMC	1 cut(s)	1302
BstSNI	TACGTA	1 cut(s)	715
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	1128, 1150, 1352, 2066, 2069
BstV2I	GAAGAC	1 cut(s)	1488
BstX2I	RGATCY	1 cut(s)	1494
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	1494
Bsu15I	ATCGAT	2 cut(s)	219, 1422
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	6 cut(s)	77, 182, 431, 1078, 1595, 2033
BsuTUI	ATCGAT	2 cut(s)	219, 1422
BtgI	CCRYGG	2 cut(s)	112, 303
BtsCI	GGATG	5 cut(s)	108, 183, 737, 916, 1605
BtsI	GCAGTG	3 cut(s)	633, 1784, 1981
BtsIMutI	CAGTG	9 cut(s)	117, 425, 633, 693, 1179, 1784, 1937, 1981, 2085
BveI	ACCTGC	3 cut(s)	46, 151, 928
Cac8I	GCNNGC	6 cut(s)	193, 292, 357, 850, 1577, 2004
CfoI	GCGC	1 cut(s)	1973
Cfr10I	RCCGGY	1 cut(s)	2009
Cfr13I	GGNCC	3 cut(s)	322, 568, 1279
ClaI	ATCGAT	2 cut(s)	219, 1422
DraI	TTTAAA	1 cut(s)	492
EaeI	YGGCCR	2 cut(s)	429, 1593
Eam1104I	CTCTTC	4 cut(s)	45, 941, 1380, 1871
EarI	CTCTTC	4 cut(s)	45, 941, 1380, 1871
Eco105I	TACGTA	1 cut(s)	715
Eco130I	CCWWGG	5 cut(s)	112, 303, 360, 741, 1530
Eco24I	GRGCYC	1 cut(s)	1822
Eco31I	GGTCTC	2 cut(s)	140, 1382
Eco47I	GGWCC	3 cut(s)	322, 568, 1279
Eco57I	CTGAAG	3 cut(s)	470, 1149, 1720
Eco91I	GGTNACC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	568
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	5 cut(s)	1002, 1014, 1391, 1595, 1724
EcoT14I	CCWWGG	5 cut(s)	112, 303, 360, 741, 1530
EcoT38I	GRGCYC	1 cut(s)	1822
ErhI	CCWWGG	5 cut(s)	112, 303, 360, 741, 1530
Esp3I	CGTCTC	2 cut(s)	2018, 2057
FalI	AAGNNNNNCTT	2 cut(s)	1692, 1724
FaqI	GGGAC	5 cut(s)	9, 353, 496, 1613, 1754
FauI	CCCGC	1 cut(s)	1469
FblI	GTMKAC	1 cut(s)	1185
Fnu4HI	GCNGC	5 cut(s)	1139, 1142, 1341, 2080, 2083
FokI	GGATG	5 cut(s)	95, 170, 724, 923, 1592
FriOI	GRGCYC	1 cut(s)	1822
Fsp4HI	GCNGC	5 cut(s)	1139, 1142, 1341, 2080, 2083
FspBI	CTAG	4 cut(s)	192, 470, 486, 1803
GlaI	GCGC	1 cut(s)	1972
GluI	GCNGC	5 cut(s)	1139, 1142, 1341, 2080, 2083
GsuI	CTGGAG	1 cut(s)	1414
HaeII	RGCGCY	1 cut(s)	1974
HaeIII	GGCC	6 cut(s)	77, 182, 431, 1078, 1595, 2033
HapII	CCGG	2 cut(s)	128, 2010
HhaI	GCGC	1 cut(s)	1973
Hin6I	GCGC	1 cut(s)	1971
HinP1I	GCGC	1 cut(s)	1971
HincII	GTYRAC	2 cut(s)	94, 955
HindII	GTYRAC	2 cut(s)	94, 955
HindIII	AAGCTT	1 cut(s)	1501
HinfI	GANTC	3 cut(s)	674, 795, 860
HpaII	CCGG	2 cut(s)	128, 2010
HphI	GGTGA	9 cut(s)	398, 406, 553, 566, 855, 994, 1003, 1228, 1285
Hpy188III	TCNNGA	6 cut(s)	655, 671, 707, 776, 1679, 1894
HpyAV	CCTTC	6 cut(s)	172, 581, 970, 1203, 1576, 1845
HpyCH4III	ACNGT	4 cut(s)	121, 652, 1183, 2029
HpyCH4IV	ACGT	2 cut(s)	22, 714
HpyF10VI	GCNNNNNNNGC	8 cut(s)	83, 188, 201, 371, 839, 1473, 1535, 1585
HpySE526I	ACGT	2 cut(s)	22, 714
HspAI	GCGC	1 cut(s)	1971
LguI	GCTCTTC	1 cut(s)	1871
LmnI	GCTCC	1 cut(s)	1585
Lsp1109I	GCAGC	5 cut(s)	1128, 1150, 1352, 2066, 2069
LweI	GCATC	6 cut(s)	225, 277, 374, 861, 1405, 2022
MaeI	CTAG	4 cut(s)	192, 470, 486, 1803
MaeII	ACGT	2 cut(s)	22, 714
MaeIII	GTNAC	4 cut(s)	541, 715, 861, 1782
MfeI	CAATTG	3 cut(s)	843, 1110, 1120
MflI	RGATCY	1 cut(s)	1494
MhlI	GDGCHC	3 cut(s)	537, 1302, 1822
MlsI	TGGCCA	2 cut(s)	431, 1595
MluCI	AATT	7 cut(s)	246, 389, 500, 843, 1110, 1120, 1547
MluNI	TGGCCA	2 cut(s)	431, 1595
MlyI	GAGTC	2 cut(s)	789, 869
MmeI	TCCRAC	1 cut(s)	251
Mox20I	TGGCCA	2 cut(s)	431, 1595
MroXI	GAANNNNTTC	2 cut(s)	1889, 1950
MscI	TGGCCA	2 cut(s)	431, 1595
MseI	TTAA	6 cut(s)	240, 491, 590, 1437, 1488, 1617
MslI	CAYNNNNRTG	3 cut(s)	962, 1305, 1766
Msp20I	TGGCCA	2 cut(s)	431, 1595
MspA1I	CMGCKG	2 cut(s)	1141, 2079
MspI	CCGG	2 cut(s)	128, 2010
MspR9I	CCNGG	6 cut(s)	129, 1004, 1016, 1393, 1597, 1726
MunI	CAATTG	3 cut(s)	843, 1110, 1120
Mva1269I	GAATGC	2 cut(s)	234, 833
MvaI	CCWGG	5 cut(s)	1004, 1016, 1393, 1597, 1726
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	8 cut(s)	83, 188, 201, 371, 839, 1473, 1535, 1585
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	2 cut(s)	112, 303
NheI	GCTAGC	1 cut(s)	191
NlaIV	GGNNCC	6 cut(s)	323, 1107, 1232, 1281, 1496, 1652
NmuCI	GTSAC	3 cut(s)	541, 861, 1782
NspI	RCATGY	3 cut(s)	1690, 1849, 1873
PciI	ACATGT	2 cut(s)	1845, 1869
PciSI	GCTCTTC	1 cut(s)	1871
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 339, 1803
PctI	GAATGC	2 cut(s)	234, 833
PdmI	GAANNNNTTC	2 cut(s)	1889, 1950
PfeI	GAWTC	1 cut(s)	674
PflMI	CCANNNNNTGG	1 cut(s)	1647
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	1140, 1143, 1342, 2081, 2084
Ple19I	CGATCG	1 cut(s)	1810
PleI	GAGTC	2 cut(s)	789, 868
PpsI	GAGTC	2 cut(s)	789, 868
Ppu21I	YACGTR	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	568
PscI	ACATGT	2 cut(s)	1845, 1869
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	5 cut(s)	1002, 1014, 1391, 1595, 1724
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	5 cut(s)	1002, 1014, 1391, 1595, 1724
PspN4I	GGNNCC	6 cut(s)	323, 1107, 1232, 1281, 1496, 1652
PspPI	GGNCC	3 cut(s)	322, 568, 1279
PspPPI	RGGWCCY	1 cut(s)	568
PsrI	GAACNNNNNNTAC	2 cut(s)	2057, 2089
PstI	CTGCAG	1 cut(s)	1146
PsuI	RGATCY	1 cut(s)	1494
PvuI	CGATCG	1 cut(s)	1810
PvuII	CAGCTG	1 cut(s)	1141
RseI	CAYNNNNRTG	3 cut(s)	962, 1305, 1766
SapI	GCTCTTC	1 cut(s)	1871
SaqAI	TTAA	6 cut(s)	240, 491, 590, 1437, 1488, 1617
SatI	GCNGC	5 cut(s)	1139, 1142, 1341, 2080, 2083
Sau96I	GGNCC	3 cut(s)	322, 568, 1279
SchI	GAGTC	2 cut(s)	789, 869
ScrFI	CCNGG	6 cut(s)	129, 1004, 1016, 1393, 1597, 1726
SduI	GDGCHC	3 cut(s)	537, 1302, 1822
SfaNI	GCATC	6 cut(s)	225, 277, 374, 861, 1405, 2022
SfcI	CTRYAG	1 cut(s)	1142
SinI	GGWCC	3 cut(s)	322, 568, 1279
SmiMI	CAYNNNNRTG	3 cut(s)	962, 1305, 1766
SmlI	CTYRAG	4 cut(s)	536, 776, 1284, 1679
SmoI	CTYRAG	4 cut(s)	536, 776, 1284, 1679
SnaBI	TACGTA	1 cut(s)	715
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	7 cut(s)	246, 389, 500, 843, 1110, 1120, 1547
SsiI	CCGC	3 cut(s)	577, 1476, 2077
SspMI	CTAG	4 cut(s)	192, 470, 486, 1803
StyD4I	CCNGG	6 cut(s)	127, 1002, 1014, 1391, 1595, 1724
StyI	CCWWGG	5 cut(s)	112, 303, 360, 741, 1530
TaaI	ACNGT	4 cut(s)	121, 652, 1183, 2029
TaiI	ACGT	2 cut(s)	25, 717
TaqI	TCGA	6 cut(s)	72, 219, 756, 1422, 1545, 1644
TasI	AATT	7 cut(s)	246, 389, 500, 843, 1110, 1120, 1547
TatI	WGTACW	4 cut(s)	1047, 1221, 1458, 1962
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	6 cut(s)	240, 491, 590, 1437, 1488, 1617
Tru9I	TTAA	6 cut(s)	240, 491, 590, 1437, 1488, 1617
TscAI	CASTG	9 cut(s)	124, 432, 640, 700, 1186, 1791, 1944, 1988, 2092
TseFI	GTSAC	3 cut(s)	541, 861, 1782
TseI	GCWGC	5 cut(s)	1138, 1141, 1340, 2079, 2082
Tsp45I	GTSAC	3 cut(s)	541, 861, 1782
TspDTI	ATGAA	8 cut(s)	33, 258, 548, 840, 1827, 1898, 1943, 1959
TspGWI	ACGGA	1 cut(s)	1598
TspRI	CASTG	9 cut(s)	124, 432, 640, 700, 1186, 1791, 1944, 1988, 2092
Van91I	CCANNNNNTGG	1 cut(s)	1647
VneI	GTGCAC	1 cut(s)	1298
VpaK11BI	GGWCC	3 cut(s)	322, 568, 1279
XapI	RAATTY	3 cut(s)	246, 389, 500
XceI	RCATGY	3 cut(s)	1690, 1849, 1873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	1185
XmnI	GAANNNNTTC	2 cut(s)	1889, 1950
XspI	CTAG	4 cut(s)	192, 470, 486, 1803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.