Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Reverse (-)

48850718 .. 48855237

Gene Structure 4520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG322800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGGCCCTTCAACCTCAAACCCCTAGGGTCAACTTTCAAACCGCCCTTGCAGCACCTCGTCAAGACAACCTTGCAACTCAAACTGCCGGCCTTGTACCTCAAACTGCCGGCCTTGTGCCTCAACAAACTCCCGGCCTTGTGCCTCAACAAAATCCCAGCCTTGTGCCTCAACAAAATCCCAGCCTTGTGCCTCAAAGTACTGCCCTTGTACCTCAAAGTGCCCCTGCACCTCAAAGTGCCCCTGCACCTCAAACTAGGGCGCCCGCCACTGTCCTAGGCCGAGGAGGAGACAACTACCCGGGAAGAGGAGGAGACAACTACCTAGGCAGAGGAGGAGACGGCTACCGTACTACTCCAGCTACTCAGCTCGGTAGAGATCGTCGTCAGTATTCAGCATCATCAGATGACAATACATTGACCAACCAAATTCTGATGACTGATAGATCTCATGAACGTCCCTACGATGTGCCTCTTCTATCTGTCAAGCAGGTTCTCCAAACAATCGAGGCCATTCTGGCTCGTGTCAACAAACCACTTGACATCCATGGCACTGTTGTTCCGGGAGGTCTCGTACCTGCAACTGCACATGTGGATACTTTGGAACATGAGAAGGCCATCCATGCTAGCCTGAGTAGCCTCCACGACAGCATCGAAGTTCCAACCAGCATTCTTAATGAAATTTCCAGCGAGATACTTAGCAAGTCTCTAACAGGGGTAGATGCAAGCAAGACCACCATGGATATTTTAGAGAGGGTCCAGCACTACGATTGGGACGAAAAGGTGGTGCTTGCCTTGGCATCTTTTGCGATCAAAGATGGTGAATTTTGGCTTGTGGCTCAGCTTTTCACCACCAACGCACTGGCCAAAGCCATCGGACTACTGAAGCAAATGCAAGAGATACTAGAACGATCTGGGACTAGTTTAAAACCGAAGTTTGAAGCATACAACAATCTGGTTAGAGCCGTGCTCAAGGTGACCAAGATCATTGTTCATTTACAGGACCTTCACCGCGACCCCCACTTAACTGCTGAAATCAAAGCTACATCTCCCACTAATCATATCCCCACTGCTGTTTACTGGACTGTCAGGAGTATAGTCATTCTTGAATCACAACTTTTAGGGATCACTGGCTCTGATCCAGAGTACGTAACAGAGGCATGGGAACTATCATCCTTGGCACACAAGCTCGAAAACATATACAACCATCTTGAGGAGAACCTAAACAGACTCTATCAACTCATTCAGAAGTTCAGAGATGAAGAAGCATTCAATGCAATTGCACGCATCTTAGAGTCACCACATATTGATAACTCCAAGCCTCTGAGGGTTTTGTTTTACAAGGATGACCAACCTGCACTCTATGATGGCTACAACAAGAAGAGGGTTGACATTGATGTGCTGAGGAGGAAGGTGGTGATACTGATGATTTCAGACCTGGACATCACCCAGGAAAATGAGTACCTGATTGCTCATCAAATGTACTCGGAGAAACGCCAGTTCCCACAAAGGCCAGAGAGCCAGTACGAGATTGTCTGGGTTCCAATTGTGGACAATTGGACTGAAGCCAAGCAGCTGCAGTTTGAGGAACTTAGAAATGGCATGGAATGGTACACTATCTACCACCCTTCGGTTGTGTCTCCGATTGTGGTGAAGTACATCAGGCACCAGCAGAAATGGAACTTTGTGAAGAAGCCTCTGCTTGTGGTGATGGACCCTCAAGGCAAAATAGTGCACACCAATGCTGTTCACATGATGTGTGTTTTCGGAAGTGCAGCATACCCATTCACAAGCAACAGAGAGAGATTGCTCTGGGAAGAAGAGACCTGGAGGATTGAGCTTTTGGCAGACGCCATCGATCAAACTCTACTTAACTGGATTTCAGAAAGGAAGTACATTTGCTTGTATGGCGGGGAAGACATTAACTGGATCCGAAGCTTCACAAGGTCTGCAAAAGAAGTTGCCTTGGAAGCTGGTATCGAATTAGAGTTGCTCTATCTTGGCAAGAGCAAGCAGAAGGAGCGAGTGGCCAGGGACATCATCCGTGTTATTAAGGAGGAGAGGCTAAGCCACACCATCGACTGGAACCTCATTTGGTTCTTCTGGGTTCGTCTTGAGAGCATGTGGCAGTCCAAAGGACAGCTTATGAGTGAGCTGTCCAGGGCTAACTTCAGGGACGATAACATAAAAAACGACATCATAATGCAGGGGATTGTGTCACTGCTGAGCTTCGGTTCCAGCGATCGGGGGTGGGCTCTGATCGGGCTTCCTTCATCAGACATGTCCAAGGGTAATGGGGATCACATGTTGAAGAGCATGAACGACTTCAAGATTTGGAAGATTAGGCACAATGAGACGGGCTTCACACCTGCACTGAATGAATATCTTCTTGGGGTGTACAAGAGCGCCCCACATCACTGCACCAGTCTCATACTGCCTGCAACCGGCATCATGCCTGAGACTGTGAGTTGTGCCGAATGTGGTCGTCTCATGGAGAGGTACGCCATGTTCCGCTGCTGCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

841

Amino Acids

95.25

Weight (kDa)

6.21

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_N	PF14576	134 - 434	6.4e-70	Sieve element occlusion N-terminus
SEO_C	PF14577	599 - 840	8e-82	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2374
Acc36I	ACCTGC	4 cut(s)	478, 583, 1360, 2374
AccB1I	GGYRCC	2 cut(s)	259, 1662
AccB7I	CCANNNNNTGG	1 cut(s)	2079
AccII	CGCG	1 cut(s)	1011
AciI	CCGC	5 cut(s)	42, 264, 1009, 1908, 2509
AclWI	GGATC	5 cut(s)	1130, 1130, 1921, 1934, 2304
AcoI	YGGCCR	2 cut(s)	861, 2025
AcsI	RAATTY	3 cut(s)	426, 678, 821
AcuI	CTGAAG	3 cut(s)	902, 1581, 2152
AcyI	GRCGYC	2 cut(s)	260, 1848
AfiI	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
AflIII	ACRYGT	3 cut(s)	586, 2277, 2301
AgsI	TTSAA	7 cut(s)	11, 38, 938, 1106, 1270, 2308, 2326
AhlI	ACTAGT	1 cut(s)	917
AjnI	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
AjuI	GAANNNNNNNTTGG	2 cut(s)	2370, 2402
Alw21I	GWGCWC	2 cut(s)	969, 1734
Alw44I	GTGCAC	1 cut(s)	1730
AlwI	GGATC	5 cut(s)	1130, 1130, 1921, 1934, 2304
Ama87I	CYCGRG	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	1730
ApeKI	GCWGC	6 cut(s)	50, 1570, 1573, 1772, 2511, 2514
ApoI	RAATTY	3 cut(s)	426, 678, 821
Asp700I	GAANNNNTTC	2 cut(s)	2321, 2382
AspA2I	CCTAGG	3 cut(s)	23, 274, 322
AspLEI	GCGC	2 cut(s)	262, 2405
AspS9I	GGNCC	4 cut(s)	4, 754, 1000, 1711
AsuC2I	CCSGG	4 cut(s)	132, 299, 300, 561
AsuHPI	GGTGA	9 cut(s)	830, 838, 985, 998, 1287, 1426, 1435, 1660, 1717
AsuNHI	GCTAGC	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	3 cut(s)	754, 1000, 1711
AvrII	CCTAGG	3 cut(s)	23, 274, 322
BaeGI	GKGCMC	3 cut(s)	223, 241, 1734
BalI	TGGCCA	2 cut(s)	863, 2027
BamHI	GGATCC	1 cut(s)	1926
BanI	GGYRCC	2 cut(s)	259, 1662
BanII	GRGCYC	1 cut(s)	2254
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	1920
Bbv12I	GWGCWC	2 cut(s)	969, 1734
BbvCI	CCTCAGC	1 cut(s)	1400
BbvI	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
BccI	CCATC	8 cut(s)	623, 809, 878, 1212, 1358, 1702, 1859, 2081
BceAI	ACGGC	2 cut(s)	355, 947
BciT130I	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	4 cut(s)	132, 299, 300, 561
BcuI	ACTAGT	1 cut(s)	917
BfaI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
BfmI	CTRYAG	1 cut(s)	1574
BfoI	RGCGCY	2 cut(s)	263, 2406
BfuAI	ACCTGC	4 cut(s)	478, 583, 1360, 2374
BfuI	GTATCC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	515
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
BlnI	CCTAGG	3 cut(s)	23, 274, 322
BlpI	GCTNAGC	3 cut(s)	837, 2063, 2222
BlsI	GCNGC	6 cut(s)	52, 1572, 1575, 1774, 2513, 2516
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
Bme18I	GGWCC	3 cut(s)	754, 1000, 1711
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	4 cut(s)	4, 754, 1000, 1711
BmiI	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
BmrFI	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
BmsI	GCATC	6 cut(s)	404, 657, 709, 806, 1293, 2454
BmtI	GCTAGC	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	1920
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
BpmI	CTGGAG	2 cut(s)	339, 1846
Bpu10I	CCTNAGC	1 cut(s)	1400
Bpu1102I	GCTNAGC	3 cut(s)	837, 2063, 2222
BpuEI	CTTGAG	4 cut(s)	953, 1229, 1701, 2132
BpuMI	CCSGG	4 cut(s)	132, 299, 300, 561
Bsa29I	ATCGAT	1 cut(s)	1854
BsaAI	YACGTR	1 cut(s)	1147
BsaHI	GRCGYC	2 cut(s)	260, 1848
BsaI	GGTCTC	2 cut(s)	572, 1814
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
Bse118I	RCCGGY	3 cut(s)	86, 107, 2441
Bse1I	ACTGG	9 cut(s)	864, 1082, 1132, 1495, 1519, 1877, 1928, 2084, 2421
BseBI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
BseCI	ATCGAT	1 cut(s)	1854
BseGI	GGATG	5 cut(s)	540, 615, 1169, 1348, 2037
BseLI	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
BseMII	CTCAG	7 cut(s)	377, 620, 851, 1313, 1391, 2213, 2445
BseNI	ACTGG	9 cut(s)	864, 1082, 1132, 1495, 1519, 1877, 1928, 2084, 2421
BseRI	GAGGAG	9 cut(s)	297, 300, 321, 324, 345, 348, 1226, 1417, 2069
BseSI	GKGCMC	3 cut(s)	223, 241, 1734
BseXI	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
BseYI	CCCAGC	2 cut(s)	155, 179
BsgI	GTGCAG	8 cut(s)	210, 228, 567, 1338, 1791, 2352, 2401, 2500
Bsh1236I	CGCG	1 cut(s)	1011
Bsh1285I	CGRYCG	1 cut(s)	2242
BshNI	GGYRCC	2 cut(s)	259, 1662
BshVI	ATCGAT	1 cut(s)	1854
BsiEI	CGRYCG	1 cut(s)	2242
BsiHKAI	GWGCWC	2 cut(s)	969, 1734
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
BslFI	GGGAC	5 cut(s)	441, 785, 928, 2045, 2186
BslI	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
BsmBI	CGTCTC	3 cut(s)	330, 2345, 2489
BsmFI	GGGAC	5 cut(s)	441, 785, 928, 2045, 2186
BsmI	GAATGC	2 cut(s)	666, 1265
Bso31I	GGTCTC	2 cut(s)	572, 1814
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	5 cut(s)	223, 241, 969, 1734, 2254
Bsp1407I	TGTACA	1 cut(s)	2394
Bsp1720I	GCTNAGC	3 cut(s)	837, 2063, 2222
Bsp19I	CCATGG	2 cut(s)	544, 735
BspACI	CCGC	5 cut(s)	42, 264, 1009, 1908, 2509
BspCNI	CTCAG	7 cut(s)	376, 621, 850, 1314, 1392, 2214, 2446
BspDI	ATCGAT	1 cut(s)	1854
BspFNI	CGCG	1 cut(s)	1011
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
BspMAI	CTGCAG	1 cut(s)	1578
BspMI	ACCTGC	4 cut(s)	478, 583, 1360, 2374
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	5 cut(s)	1130, 1130, 1921, 1934, 2304
BspQI	GCTCTTC	1 cut(s)	2303
BspT107I	GGYRCC	2 cut(s)	259, 1662
BspTNI	GGTCTC	2 cut(s)	572, 1814
BsrFI	RCCGGY	3 cut(s)	86, 107, 2441
BsrGI	TGTACA	1 cut(s)	2394
BsrI	ACTGG	9 cut(s)	864, 1082, 1132, 1495, 1519, 1877, 1928, 2084, 2421
BssAI	RCCGGY	3 cut(s)	86, 107, 2441
BssNI	GRCGYC	2 cut(s)	260, 1848
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
Bst4CI	ACNGT	5 cut(s)	271, 347, 553, 1084, 2461
Bst6I	CTCTTC	5 cut(s)	298, 477, 1373, 1812, 2303
BstACI	GRCGYC	2 cut(s)	260, 1848
BstAPI	GCANNNNNTGC	2 cut(s)	803, 1271
BstAUI	TGTACA	1 cut(s)	2394
BstBAI	YACGTR	1 cut(s)	1147
BstC8I	GCNNGC	9 cut(s)	88, 109, 264, 625, 724, 789, 1282, 2009, 2436
BstDSI	CCRYGG	2 cut(s)	544, 735
BstEII	GGTNACC	1 cut(s)	973
BstF5I	GGATG	5 cut(s)	540, 615, 1169, 1348, 2037
BstFNI	CGCG	1 cut(s)	1011
BstH2I	RGCGCY	2 cut(s)	263, 2406
BstHHI	GCGC	2 cut(s)	262, 2405
BstMCI	CGRYCG	1 cut(s)	2242
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 515, 620, 633, 803, 1271, 1905, 1967, 2017
BstNI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
BstNSI	RCATGY	4 cut(s)	590, 2122, 2281, 2305
BstPI	GGTNACC	1 cut(s)	973
BstSCI	CCNGG	9 cut(s)	130, 297, 298, 559, 1434, 1446, 1823, 2027, 2156
BstSFI	CTRYAG	1 cut(s)	1574
BstSLI	GKGCMC	3 cut(s)	223, 241, 1734
BstSNI	TACGTA	1 cut(s)	1147
BstUI	CGCG	1 cut(s)	1011
BstV1I	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
BstV2I	GAAGAC	1 cut(s)	1920
BstX2I	RGATCY	2 cut(s)	443, 1926
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	2 cut(s)	443, 1926
Bsu15I	ATCGAT	1 cut(s)	1854
BsuI	GTATCC	1 cut(s)	586
BsuTUI	ATCGAT	1 cut(s)	1854
BtgI	CCRYGG	2 cut(s)	544, 735
BtsCI	GGATG	5 cut(s)	540, 615, 1169, 1348, 2037
BtsI	GCAGTG	3 cut(s)	1065, 2216, 2413
BtsIMutI	CAGTG	9 cut(s)	267, 549, 857, 1065, 1125, 2216, 2369, 2413, 2517
BveI	ACCTGC	4 cut(s)	478, 583, 1360, 2374
Cac8I	GCNNGC	9 cut(s)	88, 109, 264, 625, 724, 789, 1282, 2009, 2436
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	262, 2405
Cfr10I	RCCGGY	3 cut(s)	86, 107, 2441
Cfr13I	GGNCC	4 cut(s)	4, 754, 1000, 1711
Cfr9I	CCCGGG	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	1854
CseI	GACGC	1 cut(s)	1856
DinI	GGCGCC	1 cut(s)	261
DraI	TTTAAA	1 cut(s)	924
EaeI	YGGCCR	2 cut(s)	861, 2025
Eam1104I	CTCTTC	5 cut(s)	298, 477, 1373, 1812, 2303
EarI	CTCTTC	5 cut(s)	298, 477, 1373, 1812, 2303
Eco105I	TACGTA	1 cut(s)	1147
Eco130I	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
Eco24I	GRGCYC	1 cut(s)	2254
Eco31I	GGTCTC	2 cut(s)	572, 1814
Eco47I	GGWCC	3 cut(s)	754, 1000, 1711
Eco57I	CTGAAG	3 cut(s)	902, 1581, 2152
Eco88I	CYCGRG	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	973
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	973
EcoRII	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
EcoT14I	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
EcoT38I	GRGCYC	1 cut(s)	2254
EgeI	GGCGCC	1 cut(s)	261
EheI	GGCGCC	1 cut(s)	261
ErhI	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
Esp3I	CGTCTC	3 cut(s)	330, 2345, 2489
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 2124, 2156
FaqI	GGGAC	5 cut(s)	441, 785, 928, 2045, 2186
FauI	CCCGC	2 cut(s)	271, 1901
Fnu4HI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
FokI	GGATG	5 cut(s)	527, 602, 1156, 1355, 2024
FriOI	GRGCYC	1 cut(s)	2254
Fsp4HI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
FspBI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
GlaI	GCGC	2 cut(s)	261, 2404
GluI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
GsaI	CCCAGC	2 cut(s)	159, 183
GsuI	CTGGAG	2 cut(s)	339, 1846
HaeII	RGCGCY	2 cut(s)	263, 2406
HapII	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
HgaI	GACGC	1 cut(s)	1856
HhaI	GCGC	2 cut(s)	262, 2405
Hin1I	GRCGYC	2 cut(s)	260, 1848
Hin6I	GCGC	2 cut(s)	260, 2403
HinP1I	GCGC	2 cut(s)	260, 2403
HincII	GTYRAC	3 cut(s)	31, 526, 1387
HindII	GTYRAC	3 cut(s)	31, 526, 1387
HindIII	AAGCTT	1 cut(s)	1933
HinfI	GANTC	3 cut(s)	1106, 1227, 1292
HpaII	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
HphI	GGTGA	9 cut(s)	830, 838, 985, 998, 1287, 1426, 1435, 1660, 1717
Hpy166II	GTNNAC	9 cut(s)	31, 526, 1075, 1387, 1549, 1611, 1732, 1747, 2395
Hpy188III	TCNNGA	8 cut(s)	62, 449, 1087, 1103, 1139, 1208, 2111, 2326
Hpy8I	GTNNAC	9 cut(s)	31, 526, 1075, 1387, 1549, 1611, 1732, 1747, 2395
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	7 cut(s)	17, 604, 1013, 1402, 1635, 2008, 2277
HpyCH4III	ACNGT	5 cut(s)	271, 347, 553, 1084, 2461
HpyCH4IV	ACGT	2 cut(s)	454, 1146
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 515, 620, 633, 803, 1271, 1905, 1967, 2017
HpySE526I	ACGT	2 cut(s)	454, 1146
Hsp92I	GRCGYC	2 cut(s)	260, 1848
HspAI	GCGC	2 cut(s)	260, 2403
KasI	GGCGCC	1 cut(s)	259
KroI	GCCGGC	2 cut(s)	86, 107
KroNI	GCCGGC	2 cut(s)	88, 109
LguI	GCTCTTC	1 cut(s)	2303
LmnI	GCTCC	1 cut(s)	2017
Lsp1109I	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
LweI	GCATC	6 cut(s)	404, 657, 709, 806, 1293, 2454
MaeI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
MaeII	ACGT	2 cut(s)	454, 1146
MaeIII	GTNAC	4 cut(s)	973, 1147, 1293, 2214
MfeI	CAATTG	3 cut(s)	1275, 1542, 1552
MflI	RGATCY	2 cut(s)	443, 1926
MhlI	GDGCHC	5 cut(s)	223, 241, 969, 1734, 2254
MlsI	TGGCCA	2 cut(s)	863, 2027
MluCI	AATT	7 cut(s)	426, 678, 821, 1275, 1542, 1552, 1979
MluNI	TGGCCA	2 cut(s)	863, 2027
Mly113I	GGCGCC	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	1221, 1301
MmeI	TCCRAC	1 cut(s)	683
Mox20I	TGGCCA	2 cut(s)	863, 2027
MroNI	GCCGGC	2 cut(s)	86, 107
MroXI	GAANNNNTTC	2 cut(s)	2321, 2382
MscI	TGGCCA	2 cut(s)	863, 2027
MseI	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
MslI	CAYNNNNRTG	3 cut(s)	1394, 1737, 2198
Msp20I	TGGCCA	2 cut(s)	863, 2027
MspA1I	CMGCKG	2 cut(s)	1573, 2511
MspI	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
MspR9I	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
MunI	CAATTG	3 cut(s)	1275, 1542, 1552
Mva1269I	GAATGC	2 cut(s)	666, 1265
MvaI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
MvnI	CGCG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	9 cut(s)	50, 515, 620, 633, 803, 1271, 1905, 1967, 2017
NaeI	GCCGGC	2 cut(s)	88, 109
NarI	GGCGCC	1 cut(s)	260
NciI	CCSGG	4 cut(s)	132, 299, 300, 561
NcoI	CCATGG	2 cut(s)	544, 735
NgoMIV	GCCGGC	2 cut(s)	86, 107
NheI	GCTAGC	1 cut(s)	623
NlaIV	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	973, 1293, 2214
NspI	RCATGY	4 cut(s)	590, 2122, 2281, 2305
PagI	TCATGA	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	2374
PciI	ACATGT	3 cut(s)	586, 2277, 2301
PciSI	GCTCTTC	1 cut(s)	2303
PcsI	WCGNNNNNNNCGW	3 cut(s)	648, 771, 2235
PctI	GAATGC	2 cut(s)	666, 1265
PdiI	GCCGGC	2 cut(s)	88, 109
PdmI	GAANNNNTTC	2 cut(s)	2321, 2382
PfeI	GAWTC	1 cut(s)	1106
PflMI	CCANNNNNTGG	1 cut(s)	2079
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	6 cut(s)	52, 1572, 1575, 1774, 2513, 2516
Ple19I	CGATCG	1 cut(s)	2242
PleI	GAGTC	2 cut(s)	1221, 1300
PluTI	GGCGCC	1 cut(s)	263
PpsI	GAGTC	2 cut(s)	1221, 1300
Ppu21I	YACGTR	1 cut(s)	1147
PpuMI	RGGWCCY	1 cut(s)	1000
PscI	ACATGT	3 cut(s)	586, 2277, 2301
Psp5II	RGGWCCY	1 cut(s)	1000
Psp6I	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
PspEI	GGTNACC	1 cut(s)	973
PspFI	CCCAGC	2 cut(s)	155, 179
PspGI	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
PspN4I	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
PspPI	GGNCC	4 cut(s)	4, 754, 1000, 1711
PspPPI	RGGWCCY	1 cut(s)	1000
PsrI	GAACNNNNNNTAC	2 cut(s)	2489, 2521
PstI	CTGCAG	1 cut(s)	1578
PsuI	RGATCY	2 cut(s)	443, 1926
PvuI	CGATCG	1 cut(s)	2242
PvuII	CAGCTG	1 cut(s)	1573
RseI	CAYNNNNRTG	3 cut(s)	1394, 1737, 2198
SapI	GCTCTTC	1 cut(s)	2303
SaqAI	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
SatI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
Sau96I	GGNCC	4 cut(s)	4, 754, 1000, 1711
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	2 cut(s)	1221, 1301
ScrFI	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
SduI	GDGCHC	5 cut(s)	223, 241, 969, 1734, 2254
SfaNI	GCATC	6 cut(s)	404, 657, 709, 806, 1293, 2454
SfcI	CTRYAG	1 cut(s)	1574
SfoI	GGCGCC	1 cut(s)	261
SinI	GGWCC	3 cut(s)	754, 1000, 1711
SmaI	CCCGGG	1 cut(s)	300
SmiMI	CAYNNNNRTG	3 cut(s)	1394, 1737, 2198
SmlI	CTYRAG	4 cut(s)	968, 1208, 1716, 2111
SmoI	CTYRAG	4 cut(s)	968, 1208, 1716, 2111
SnaBI	TACGTA	1 cut(s)	1147
SpeI	ACTAGT	1 cut(s)	917
Sse9I	AATT	7 cut(s)	426, 678, 821, 1275, 1542, 1552, 1979
SsiI	CCGC	5 cut(s)	42, 264, 1009, 1908, 2509
SspDI	GGCGCC	1 cut(s)	259
SspMI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
StyD4I	CCNGG	9 cut(s)	130, 297, 298, 559, 1434, 1446, 1823, 2027, 2156
StyI	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
TaaI	ACNGT	5 cut(s)	271, 347, 553, 1084, 2461
TaiI	ACGT	2 cut(s)	457, 1149
TaqI	TCGA	6 cut(s)	504, 651, 1188, 1854, 1977, 2076
TasI	AATT	7 cut(s)	426, 678, 821, 1275, 1542, 1552, 1979
TatI	WGTACW	5 cut(s)	197, 1479, 1653, 1890, 2394
TfiI	GAWTC	1 cut(s)	1106
Tru1I	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
Tru9I	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
TscAI	CASTG	9 cut(s)	274, 556, 864, 1072, 1132, 2223, 2376, 2420, 2524
TseFI	GTSAC	3 cut(s)	973, 1293, 2214
TseI	GCWGC	6 cut(s)	50, 1570, 1573, 1772, 2511, 2514
Tsp45I	GTSAC	3 cut(s)	973, 1293, 2214
TspDTI	ATGAA	7 cut(s)	465, 690, 980, 1272, 2259, 2330, 2391
TspGWI	ACGGA	1 cut(s)	2030
TspMI	CCCGGG	1 cut(s)	298
TspRI	CASTG	9 cut(s)	274, 556, 864, 1072, 1132, 2223, 2376, 2420, 2524
Van91I	CCANNNNNTGG	1 cut(s)	2079
VneI	GTGCAC	1 cut(s)	1730
VpaK11BI	GGWCC	3 cut(s)	754, 1000, 1711
XapI	RAATTY	3 cut(s)	426, 678, 821
XceI	RCATGY	4 cut(s)	590, 2122, 2281, 2305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmaI	CCCGGG	1 cut(s)	298
XmaJI	CCTAGG	3 cut(s)	23, 274, 322
XmnI	GAANNNNTTC	2 cut(s)	2321, 2382
XspI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.