Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Reverse (-)

56716368 .. 56720719

Gene Structure 4352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGCCCTTGTACCTCATAATCGGGCCCCCAACACCATTCGTAGAGGAGACAATTATCGCCCTCCTCTGCCTAGTAGAGATGGCCGTCGTCAATTTGAAACAGATGACAGTTCATTGATCAGCCAAGTTCTGTTCATCGATGAATCTCATGATGACCGTCCCTATGATCCTACTCCTATTTCTTTGAAACATATTCTACAAGCCGCAGAGATTATTATTCTTTCCCATGTCAACACCCCTGATATCCATTCCAAAGTTTCGAGGCCGGATCTAGAGCGGACATCTGCACTGTCGCTAAAGTGCGGACAGCGACGCTGCAGCCACGTTCAAGCACCCACAGCGGCTCGAATCTTGCCGGACAGAGGCCAGAGGCATCCCAGACCGCTTCTGGGCAGCGATCGAGGTCGAAGGAGATTGAGCTTGAAGGTTCTGGGCAGCGACCTCACCTACAACTTCAAGGTTCTGGGCAGCGACTGCAAACTGATAGCCAGTGACTCCACTAGCAAGAAGAAGGTCAAGATCGACCTTGGCCTCTGTCCGGCAAGTCCTGAGGTGCCGTCGCGGCCTGAACGTTGCTGCAGCGTTGCCGTCCGCACTTTCACAACTGTGCGGACGTCCGCTCTAGATTGCCTCCGTGGATCAGCAGAAACTGCAGATGCACATGAGGATGCCTTGGAACATCATGCGAGCCCGATTACCCTCCATGAAAGCTACGGTGTTCCAAGCAGCATCTTTATTGCAATTTCCTGCAAGTTATTTACAAGAAAATGGCTGACTGGGGAAGATAACAACAAGAAAAATATAGCACTGGGTATTTTATATGCCGTCCACCAGTACGATTGGCAAGAAAAGGTGGTACTAGTCTTGGGAACTTTTGCTGTGAAAAATGGTGAGCTTTGGCTTGTGGCTCAGCTTTACACCACCTATACGCTCGCCAAAGAGATTGGAAAACTCGAGCACTTACCTGAGTTACTGGAGCGTGCAGAGACTGATTTCAAGTCAAAATTTGAAACATACAACAACCTTGTTAAAGCCGTGCTCAGAGTGACCAAGCTCATTATTCGGTTACAGGAGCTTCGCTCTGATCCTCACTCAACCACCGAGCTAGAATCTACAACCAATTCAACTGAGGTTCATATTGCCAGTGCTGTTTACTGGACAATTTGGAGTCTAGTAGTTGCTGCATCACATTTTGTAGGGATCACATGCATGGGTCCGGAGAAGAAAGATGATGAAGCATTAGCTGCGATTGCATACATTTTAGAAAACCCACATGTTGACAACATGAAGCCTTTAAAGGTTTTGTTTTTCAAAGATAACCAGCCAGCACTCTATGATTGCTACAGAAAAAGAAGGGTGAGTATTGGTCTGTTGAAGGGGAAGGTTGTAATACTGTTCCTTACAGACCTAAACATCCTCCATGAAAACGAGTACATGATCGTCCAACAAATGTACGTGGAAAAACGCCACAAGCCAATGAAGCCGGAGAGCCAGTACGAGGTTGTGTGGGTTCCGATTGTGGACACATGGACCGAAGACAAGTACGAACAGTTCGAGAGGATTAGAAATTGTATGGAATGGTACTCGGTTTACCTCCCTTCCGTAGTTTCGCCGACTGTGATCAGGTACATCCGAAAGGAGGATAAATGGAAATTTGTGAAGAAGCCTTTGCTTGTGGTGATGGACCCTCAAGGTAATATAGTGCACACCAATGCTGTACACATGATGTGTGTTTTTGGAAGCATAGCATTTCCATTCAATAAAAACAGGGAGGAAGTGCTCTGGGAAGAGGAGACCTGGAGAATTGAACTTGTGGCAGACTCCATCGATGAGAACTTAATTCCTTGGATCACCGAAAGGAAATACATTTGCTTGTACGGTGGAGAAGACATAAAATGGATCCGGAGTTTCACAAGGGCGGCAAGAAGTGTGGCTTGGGAAGCTGGAATCCGGTTGGAATTGCTTTACGTGGGCAAGAGGAAGGCTACGGAGAAAGTGGTGAAGAACATAATGAGAATCATTCAAGACGAGAATCTAAGCCACACGATCGAGTGGCAATTCATTTCGTTGTTCTGGACTCGTCTAGAAAGCATGTGGGAATCCAAAGGACATCAACTCCAGAACAAGCTTAAGAAATCAAGTCAACTTGGGACGACCGATTATGTTGCTATGAAAAACGACGATGCCGTAATGCAAGGGATTATATCAATGCTGACTTTCGGTTCCAGCGACCACGGGTGGGCGCTGATTGGGACCGGTTCGGCGGAGATGTCTAAGGCAAACGGGGAGCATATGTTGAGGAGCTTGAGGGAGTTTAATGCGTGGAAGACAAGGCACAGTGAGTTAGGGTTTACCCCTGCACTGAATGAATACCTTGCTGGGGTGTCTAAGCAGGCCCCACATCACTGCTCCAGTTTGATGTTGCCTGTCACCGGAGTCATGCCGGAGATGGTGGCCTGCGCTGAATGTGGACGTATCATGGAGAGGTTCAACATGTTCCGCTGCTGCACTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

838

Amino Acids

95.76

Weight (kDa)

8.36

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_N	PF14576	215 - 411	4.4e-37	Sieve element occlusion N-terminus
SEO_C	PF14577	590 - 837	3.2e-78	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	553
AccBSI	CCGCTC	2 cut(s)	277, 620
AccII	CGCG	1 cut(s)	562
AccIII	TCCGGA	2 cut(s)	1216, 1902
AclI	AACGTT	1 cut(s)	571
AclWI	GGATC	8 cut(s)	161, 276, 646, 1079, 1208, 1856, 1894, 1907
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	1004, 1652
AcyI	GRCGYC	1 cut(s)	614
AfiI	CCNNNNNNNGG	8 cut(s)	362, 389, 538, 1498, 1639, 2239, 2380, 2432
AflII	CTTAAG	1 cut(s)	2129
AflIII	ACRYGT	2 cut(s)	1273, 2493
AgeI	ACCGGT	1 cut(s)	2255
AhlI	ACTAGT	1 cut(s)	859
AjnI	CCWGG	1 cut(s)	1796
AjuI	GAANNNNNNNTTGG	2 cut(s)	1918, 1950
AleI	CACNNNNGTG	1 cut(s)	605
Alw21I	GWGCWC	4 cut(s)	960, 1041, 1707, 1782
Alw26I	GTCTC	3 cut(s)	42, 980, 1787
Alw44I	GTGCAC	1 cut(s)	1703
AlwI	GGATC	8 cut(s)	161, 276, 646, 1079, 1208, 1856, 1894, 1907
AlwNI	CAGNNNCTG	3 cut(s)	474, 650, 989
Ama87I	CYCGRG	1 cut(s)	953
Aor13HI	TCCGGA	2 cut(s)	1216, 1902
AoxI	GGCC	9 cut(s)	3, 24, 82, 263, 364, 529, 563, 2394, 2454
ApaI	GGGCCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	1703
ApoI	RAATTY	2 cut(s)	1004, 1652
AsiGI	ACCGGT	1 cut(s)	2255
AspLEI	GCGC	2 cut(s)	2245, 2462
AspS9I	GGNCC	8 cut(s)	4, 24, 25, 1214, 1530, 1684, 2253, 2395
AsuHPI	GGTGA	7 cut(s)	436, 902, 1369, 1690, 1843, 2011, 2422
AvaI	CYCGRG	1 cut(s)	953
AvaII	GGWCC	4 cut(s)	1214, 1530, 1684, 2253
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	2 cut(s)	28, 1707
BamHI	GGATCC	1 cut(s)	1899
BanI	GGYRCC	1 cut(s)	553
BanII	GRGCYC	2 cut(s)	28, 692
BbsI	GAAGAC	3 cut(s)	1542, 1893, 2333
Bbv12I	GWGCWC	4 cut(s)	960, 1041, 1707, 1782
BccI	CCATC	4 cut(s)	74, 1675, 1832, 2443
BceAI	ACGGC	6 cut(s)	69, 541, 572, 809, 1019, 2171
BcgI	CGANNNNNNTGC	2 cut(s)	2147, 2181
BciT130I	CCWGG	1 cut(s)	1798
BclI	TGATCA	2 cut(s)	117, 1620
BcoDI	GTCTC	3 cut(s)	42, 980, 1787
BcuI	ACTAGT	1 cut(s)	859
BfaI	CTAG	8 cut(s)	72, 272, 501, 623, 860, 1106, 1172, 2084
BfmI	CTRYAG	4 cut(s)	316, 577, 651, 1342
BfoI	RGCGCY	1 cut(s)	2246
BfrI	CTTAAG	1 cut(s)	2129
BglI	GCCNNNNNGGC	1 cut(s)	562
BlpI	GCTNAGC	1 cut(s)	909
Bme1390I	CCNGG	1 cut(s)	1798
Bme18I	GGWCC	4 cut(s)	1214, 1530, 1684, 2253
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	8 cut(s)	4, 24, 25, 1214, 1530, 1684, 2253, 2395
BmrFI	CCNGG	1 cut(s)	1798
BmrI	ACTGGG	2 cut(s)	786, 818
BmsI	GCATC	6 cut(s)	382, 646, 658, 738, 1193, 2173
BmuI	ACTGGG	2 cut(s)	786, 818
BpiI	GAAGAC	3 cut(s)	1542, 1893, 2333
BplI	GAGNNNNNCTC	2 cut(s)	1064, 1096
BpmI	CTGGAG	4 cut(s)	995, 1819, 2102, 2395
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuEI	CTTGAG	2 cut(s)	1674, 2326
Bsa29I	ATCGAT	2 cut(s)	138, 1827
BsaAI	YACGTR	2 cut(s)	1456, 1969
BsaHI	GRCGYC	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	1787
BsaJI	CCNNGG	5 cut(s)	526, 634, 672, 1844, 2233
BsaWI	WCCGGW	5 cut(s)	1216, 1902, 1950, 2255, 2432
BsaXI	ACNNNNNCTCC	6 cut(s)	1478, 1508, 2100, 2130, 2279, 2309
Bsc4I	CCNNNNNNNGG	8 cut(s)	362, 389, 538, 1498, 1639, 2239, 2380, 2432
Bse118I	RCCGGY	1 cut(s)	2255
Bse1I	ACTGG	9 cut(s)	489, 781, 813, 832, 978, 1143, 1160, 1492, 2412
Bse21I	CCTNAGG	1 cut(s)	549
BseAI	TCCGGA	2 cut(s)	1216, 1902
BseBI	CCWGG	1 cut(s)	1798
BseCI	ATCGAT	2 cut(s)	138, 1827
BseDI	CCNNGG	5 cut(s)	526, 634, 672, 1844, 2233
BseGI	GGATG	4 cut(s)	373, 673, 1413, 1629
BseLI	CCNNNNNNNGG	8 cut(s)	362, 389, 538, 1498, 1639, 2239, 2380, 2432
BseMII	CTCAG	5 cut(s)	540, 923, 957, 1054, 1119
BseNI	ACTGG	9 cut(s)	489, 781, 813, 832, 978, 1143, 1160, 1492, 2412
BseRI	GAGGAG	4 cut(s)	54, 60, 1805, 2314
BseSI	GKGCMC	2 cut(s)	28, 1707
BseYI	CCCAGC	1 cut(s)	2378
BsgI	GTGCAG	4 cut(s)	270, 1002, 2343, 2491
Bsh1236I	CGCG	1 cut(s)	562
Bsh1285I	CGRYCG	3 cut(s)	400, 2049, 2157
BshFI	GGCC	9 cut(s)	5, 26, 84, 265, 366, 531, 565, 2396, 2456
BshNI	GGYRCC	1 cut(s)	553
BshTI	ACCGGT	1 cut(s)	2255
BshVI	ATCGAT	2 cut(s)	138, 1827
BsiEI	CGRYCG	3 cut(s)	400, 2049, 2157
BsiHKAI	GWGCWC	4 cut(s)	960, 1041, 1707, 1782
BsiHKCI	CYCGRG	1 cut(s)	953
BslFI	GGGAC	3 cut(s)	144, 2164, 2266
BslI	CCNNNNNNNGG	8 cut(s)	362, 389, 538, 1498, 1639, 2239, 2380, 2432
BsmAI	GTCTC	3 cut(s)	42, 980, 1787
BsmFI	GGGAC	3 cut(s)	144, 2164, 2266
BsnI	GGCC	9 cut(s)	5, 26, 84, 265, 366, 531, 565, 2396, 2456
Bso31I	GGTCTC	1 cut(s)	1787
BsoBI	CYCGRG	1 cut(s)	953
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	6 cut(s)	28, 692, 960, 1041, 1707, 1782
Bsp13I	TCCGGA	2 cut(s)	1216, 1902
Bsp1407I	TGTACA	1 cut(s)	1717
Bsp1720I	GCTNAGC	1 cut(s)	909
BspANI	GGCC	9 cut(s)	5, 26, 84, 265, 366, 531, 565, 2396, 2456
BspCNI	CTCAG	5 cut(s)	541, 922, 958, 1053, 1120
BspDI	ATCGAT	2 cut(s)	138, 1827
BspEI	TCCGGA	2 cut(s)	1216, 1902
BspFNI	CGCG	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	148
BspMAI	CTGCAG	3 cut(s)	320, 581, 655
BspPI	GGATC	8 cut(s)	161, 276, 646, 1079, 1208, 1856, 1894, 1907
BspT107I	GGYRCC	1 cut(s)	553
BspTI	CTTAAG	1 cut(s)	2129
BspTNI	GGTCTC	1 cut(s)	1787
BsrBI	CCGCTC	2 cut(s)	277, 620
BsrFI	RCCGGY	1 cut(s)	2255
BsrGI	TGTACA	1 cut(s)	1717
BsrI	ACTGG	9 cut(s)	489, 781, 813, 832, 978, 1143, 1160, 1492, 2412
BssAI	RCCGGY	1 cut(s)	2255
BssECI	CCNNGG	5 cut(s)	526, 634, 672, 1844, 2233
BssNI	GRCGYC	1 cut(s)	614
BssT1I	CCWWGG	3 cut(s)	526, 672, 1844
Bst2UI	CCWGG	1 cut(s)	1798
Bst6I	CTCTTC	1 cut(s)	1782
BstACI	GRCGYC	1 cut(s)	614
BstAFI	CTTAAG	1 cut(s)	2129
BstAPI	GCANNNNNTGC	3 cut(s)	474, 650, 1244
BstAUI	TGTACA	1 cut(s)	1717
BstBAI	YACGTR	2 cut(s)	1456, 1969
BstC8I	GCNNGC	6 cut(s)	688, 933, 981, 1326, 2394, 2458
BstDEI	CTNAG	8 cut(s)	549, 909, 966, 1040, 1128, 2036, 2274, 2388
BstDSI	CCRYGG	2 cut(s)	634, 2233
BstF5I	GGATG	4 cut(s)	373, 673, 1413, 1629
BstFNI	CGCG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	2246
BstHHI	GCGC	2 cut(s)	2245, 2462
BstMAI	GTCTC	3 cut(s)	42, 980, 1787
BstMCI	CGRYCG	3 cut(s)	400, 2049, 2157
BstMWI	GCNNNNNNNGC	8 cut(s)	338, 474, 562, 650, 1244, 1250, 1480, 1940
BstNI	CCWGG	1 cut(s)	1798
BstNSI	RCATGY	4 cut(s)	1209, 1277, 2095, 2497
BstSCI	CCNGG	1 cut(s)	1796
BstSFI	CTRYAG	4 cut(s)	316, 577, 651, 1342
BstSLI	GKGCMC	2 cut(s)	28, 1707
BstUI	CGCG	1 cut(s)	562
BstV2I	GAAGAC	3 cut(s)	1542, 1893, 2333
BstX2I	RGATCY	2 cut(s)	268, 1899
BstYI	RGATCY	2 cut(s)	268, 1899
Bsu15I	ATCGAT	2 cut(s)	138, 1827
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	9 cut(s)	5, 26, 84, 265, 366, 531, 565, 2396, 2456
BsuTUI	ATCGAT	2 cut(s)	138, 1827
BtgI	CCRYGG	2 cut(s)	634, 2233
BtsCI	GGATG	4 cut(s)	373, 673, 1413, 1629
BtsI	GCAGTG	1 cut(s)	2404
BtsIMutI	CAGTG	8 cut(s)	287, 496, 806, 1150, 2344, 2360, 2404, 2508
Cac8I	GCNNGC	6 cut(s)	688, 933, 981, 1326, 2394, 2458
CaiI	CAGNNNCTG	3 cut(s)	474, 650, 989
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	2 cut(s)	2245, 2462
Cfr10I	RCCGGY	1 cut(s)	2255
Cfr13I	GGNCC	8 cut(s)	4, 24, 25, 1214, 1530, 1684, 2253, 2395
ClaI	ATCGAT	2 cut(s)	138, 1827
CseI	GACGC	1 cut(s)	321
CspAI	ACCGGT	1 cut(s)	2255
CspCI	CAANNNNNGTGG	2 cut(s)	1911, 1946
DdeI	CTNAG	8 cut(s)	549, 909, 966, 1040, 1128, 2036, 2274, 2388
DraI	TTTAAA	1 cut(s)	1296
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	1782
EarI	CTCTTC	1 cut(s)	1782
EciI	GGCGGA	1 cut(s)	2279
Eco130I	CCWWGG	3 cut(s)	526, 672, 1844
Eco24I	GRGCYC	2 cut(s)	28, 692
Eco31I	GGTCTC	1 cut(s)	1787
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	4 cut(s)	1214, 1530, 1684, 2253
Eco81I	CCTNAGG	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	953
EcoO109I	RGGNCCY	2 cut(s)	25, 2395
EcoRII	CCWGG	1 cut(s)	1796
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	3 cut(s)	526, 672, 1844
EcoT22I	ATGCAT	1 cut(s)	1211
EcoT38I	GRGCYC	2 cut(s)	28, 692
ErhI	CCWWGG	3 cut(s)	526, 672, 1844
FalI	AAGNNNNNCTT	2 cut(s)	1918, 1950
FaqI	GGGAC	3 cut(s)	144, 2164, 2266
FauNDI	CATATG	1 cut(s)	2292
FbaI	TGATCA	2 cut(s)	117, 1620
FokI	GGATG	4 cut(s)	360, 680, 1400, 1616
FriOI	GRGCYC	2 cut(s)	28, 692
FspBI	CTAG	8 cut(s)	72, 272, 501, 623, 860, 1106, 1172, 2084
GlaI	GCGC	2 cut(s)	2244, 2461
GsaI	CCCAGC	1 cut(s)	2382
GsuI	CTGGAG	4 cut(s)	995, 1819, 2102, 2395
HaeII	RGCGCY	1 cut(s)	2246
HaeIII	GGCC	9 cut(s)	5, 26, 84, 265, 366, 531, 565, 2396, 2456
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	2 cut(s)	2245, 2462
Hin1I	GRCGYC	1 cut(s)	614
Hin6I	GCGC	2 cut(s)	2243, 2460
HinP1I	GCGC	2 cut(s)	2243, 2460
HincII	GTYRAC	3 cut(s)	232, 1279, 2144
HindII	GTYRAC	3 cut(s)	232, 1279, 2144
HindIII	AAGCTT	1 cut(s)	2126
HphI	GGTGA	7 cut(s)	436, 902, 1369, 1690, 1843, 2011, 2422
Hpy188I	TCNGA	4 cut(s)	1043, 1084, 1515, 1634
Hpy99I	CGWCG	4 cut(s)	90, 315, 562, 2183
HpyAV	CCTTC	8 cut(s)	402, 418, 505, 1347, 1369, 1375, 1608, 1975
HpyCH4IV	ACGT	6 cut(s)	324, 571, 614, 1455, 1968, 2473
HpyF10VI	GCNNNNNNNGC	8 cut(s)	338, 474, 562, 650, 1244, 1250, 1480, 1940
HpyF3I	CTNAG	8 cut(s)	549, 909, 966, 1040, 1128, 2036, 2274, 2388
HpySE526I	ACGT	6 cut(s)	324, 571, 614, 1455, 1968, 2473
Hsp92I	GRCGYC	1 cut(s)	614
HspAI	GCGC	2 cut(s)	2243, 2460
Kpn2I	TCCGGA	2 cut(s)	1216, 1902
Ksp22I	TGATCA	2 cut(s)	117, 1620
LmnI	GCTCC	5 cut(s)	976, 1072, 2287, 2301, 2414
LweI	GCATC	6 cut(s)	382, 646, 658, 738, 1193, 2173
MaeI	CTAG	8 cut(s)	72, 272, 501, 623, 860, 1106, 1172, 2084
MaeII	ACGT	6 cut(s)	324, 571, 614, 1455, 1968, 2473
MaeIII	GTNAC	5 cut(s)	491, 969, 1045, 1065, 2428
MbiI	CCGCTC	2 cut(s)	277, 620
MboII	GAAGA	9 cut(s)	520, 794, 1234, 1547, 1672, 1799, 1898, 2014, 2338
MflI	RGATCY	2 cut(s)	268, 1899
MhlI	GDGCHC	6 cut(s)	28, 692, 960, 1041, 1707, 1782
MlyI	GAGTC	5 cut(s)	488, 1177, 1814, 2071, 2445
MmeI	TCCRAC	2 cut(s)	1468, 1935
Mph1103I	ATGCAT	1 cut(s)	1211
MroI	TCCGGA	2 cut(s)	1216, 1902
MseI	TTAA	5 cut(s)	1029, 1295, 1838, 2130, 2316
MslI	CAYNNNNRTG	4 cut(s)	605, 666, 1208, 1710
MspA1I	CMGCKG	2 cut(s)	341, 2502
MspCI	CTTAAG	1 cut(s)	2129
MspR9I	CCNGG	1 cut(s)	1798
MvaI	CCWGG	1 cut(s)	1798
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	8 cut(s)	338, 474, 562, 650, 1244, 1250, 1480, 1940
NdeI	CATATG	1 cut(s)	2292
NmuCI	GTSAC	3 cut(s)	491, 1045, 2428
NsiI	ATGCAT	1 cut(s)	1211
NspI	RCATGY	4 cut(s)	1209, 1277, 2095, 2497
OliI	CACNNNNGTG	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	953
PagI	TCATGA	1 cut(s)	148
PciI	ACATGT	2 cut(s)	1273, 2493
PcsI	WCGNNNNNNNCGW	3 cut(s)	1551, 2184, 2226
PfeI	GAWTC	7 cut(s)	143, 348, 1109, 1947, 2016, 2032, 2099
PinAI	ACCGGT	1 cut(s)	2255
Ple19I	CGATCG	2 cut(s)	400, 2049
PleI	GAGTC	5 cut(s)	488, 1176, 1814, 2071, 2444
PpsI	GAGTC	5 cut(s)	488, 1176, 1814, 2071, 2444
Ppu21I	YACGTR	2 cut(s)	1456, 1969
PscI	ACATGT	2 cut(s)	1273, 2493
Psp1406I	AACGTT	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	1796
PspFI	CCCAGC	1 cut(s)	2378
PspGI	CCWGG	1 cut(s)	1796
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	8 cut(s)	4, 24, 25, 1214, 1530, 1684, 2253, 2395
PspXI	VCTCGAGB	1 cut(s)	953
PsrI	GAACNNNNNNTAC	2 cut(s)	1535, 1567
PstI	CTGCAG	3 cut(s)	320, 581, 655
PstNI	CAGNNNCTG	3 cut(s)	474, 650, 989
PsuI	RGATCY	2 cut(s)	268, 1899
PvuI	CGATCG	2 cut(s)	400, 2049
RseI	CAYNNNNRTG	4 cut(s)	605, 666, 1208, 1710
SaqAI	TTAA	5 cut(s)	1029, 1295, 1838, 2130, 2316
Sau96I	GGNCC	8 cut(s)	4, 24, 25, 1214, 1530, 1684, 2253, 2395
SchI	GAGTC	5 cut(s)	488, 1177, 1814, 2071, 2445
ScrFI	CCNGG	1 cut(s)	1798
SduI	GDGCHC	6 cut(s)	28, 692, 960, 1041, 1707, 1782
SfaNI	GCATC	6 cut(s)	382, 646, 658, 738, 1193, 2173
SfcI	CTRYAG	4 cut(s)	316, 577, 651, 1342
Sfr274I	CTCGAG	1 cut(s)	953
SinI	GGWCC	4 cut(s)	1214, 1530, 1684, 2253
SlaI	CTCGAG	1 cut(s)	953
SmiMI	CAYNNNNRTG	4 cut(s)	605, 666, 1208, 1710
SmlI	CTYRAG	4 cut(s)	953, 1689, 2129, 2305
SmoI	CTYRAG	4 cut(s)	953, 1689, 2129, 2305
SpeI	ACTAGT	1 cut(s)	859
SspMI	CTAG	8 cut(s)	72, 272, 501, 623, 860, 1106, 1172, 2084
StyD4I	CCNGG	1 cut(s)	1796
StyI	CCWWGG	3 cut(s)	526, 672, 1844
TaiI	ACGT	6 cut(s)	327, 574, 617, 1458, 1971, 2476
TaqII	GACCGA	2 cut(s)	1547, 2171
TatI	WGTACW	2 cut(s)	1431, 1717
TauI	GCSGC	4 cut(s)	206, 344, 565, 1922
TfiI	GAWTC	7 cut(s)	143, 348, 1109, 1947, 2016, 2032, 2099
Tru1I	TTAA	5 cut(s)	1029, 1295, 1838, 2130, 2316
Tru9I	TTAA	5 cut(s)	1029, 1295, 1838, 2130, 2316
TscAI	CASTG	8 cut(s)	294, 496, 813, 1150, 2344, 2367, 2411, 2515
TseFI	GTSAC	3 cut(s)	491, 1045, 2428
Tsp45I	GTSAC	3 cut(s)	491, 1045, 2428
TspGWI	ACGGA	3 cut(s)	623, 1591, 2003
TspRI	CASTG	8 cut(s)	294, 496, 813, 1150, 2344, 2367, 2411, 2515
Vha464I	CTTAAG	1 cut(s)	2129
VneI	GTGCAC	1 cut(s)	1703
VpaK11BI	GGWCC	4 cut(s)	1214, 1530, 1684, 2253
XapI	RAATTY	2 cut(s)	1004, 1652
XbaI	TCTAGA	3 cut(s)	271, 622, 2083
XceI	RCATGY	4 cut(s)	1209, 1277, 2095, 2497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	953
XspI	CTAG	8 cut(s)	72, 272, 501, 623, 860, 1106, 1172, 2084
ZraI	GACGTC	1 cut(s)	615
Zsp2I	ATGCAT	1 cut(s)	1211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.