Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Forward (+)

10902412 .. 10905631

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGGCCCTTCAACCTCAAACCCCTAGGGTCAACTTTCAAAGCACCCTTGCAGCACCTCGTCAAGACACCCTTGCACCTCAGAGTACCGGCCTCGTACCTCAGAGTACCGGCCTCGTACCTCAAACTGCCGGCCTTGTGCCTCAACAAAATCCCAGCCTTGTGCCTCAACAAAATCCCAGCCTTATGCCTCAACAAAATCCCAGCCTTGTGCCTCAAAGTACTGCCCTTGTACCTCAAAGTGCCCCTGCACCTCAAAGTGCCCTTGTGCCTCAAACTAGGGCGCCCACCACTGTCCTAGGCCGAGGAGGAGACAGTTACCTAGGCAGAGGAGGAGACGGCTACCGTACTACTCCAGCTACTCAGCTCGGTAGAGATCGTCGTCAGTATTCAGCATCATCAGATGACAATACATTGACCAACCAAATTCTGATGACTGATAGATCGCATGAACGTCCCTACGATGTGCCTCTTCTATCTGTCAAGCAGGTTCTCCAAACAATCGAGGCCATTCTGGCTCGTGTCAACAAACCACTTGACATCCATGGCACTGTAGTTCCGGGAGGTCTCGTACCTGCAATTGCACATGTGGATACTTTGGAACATGAGAAGGCCATCCATGCTAGCCTGAGTAGCCTCCACGACAGCATCGATGTTCCAACCAGCATTCTTAATGAAATTTCCAGCGAGATACTTAGCAAGTCGCTATCAGGGGTAGATGCAAGCAAGACCACCATGGATATTTTAGAGAGGGTCCAGCACTACGATTGGGATGAAAAAGTGGTGCTTGCCTTGGCATCTTTTGCGATCAAAGATGGTGAATTTTGGCTTGTGGCTCAGCTTTTCACCACCAACGCACTGGCCAAATCCATTGGACAACTGAAGCAAATGCAAGAGATACTAGAACGATCTGGGACTAGTTTAAAACCAAAGTTTGAAGCATACAACAATCTGGTTAGAGCCGTGCTCAAGGTGACCAAGATCATTGTTCATTTACAGGACCTTCACCGCGACCCCCACTTAACTGCTGAAATCAAAGCTACATCTCCCACTAATCATATCCCCACTGCTGTTTACTGGACTGTCAGGAGTATAGTCATTCTTGCATCACAACTTTTAGGGATCACTGGCTCTGATCCAGAGTACGTAACAGAGGCATGGGAACTATCATCCTTGGCACACAAGCTCGAAAACATATATAACCATCTTGAGGAGAACCTAAACAGACTCTATCAACTCATTCAGAAGTTCAGAGATGAAGAAGCATTCAATGCAATTGCACGCATCTTAGAGTCACCACATATTGATAACTCCAAGCCTCTGAGGGTTTTGTTTTACAAGGATGACCAACCTGCACTCTATGATGGCTACAACAAGAAGAGGGTGGACACTGATGTGCTGAGGAGGAAGGTGGTGATACTGATGATTTCAGACCTGGACATCACCCAGGAAAATGAGTACCTGATTGCTCATCAAATGTACTCGGAGAAACGCCAGTTCCCACAAAGACCAGAGAGCCAGTACGAGATTGTCTGGGTTCCAATCGTGGACAATTGGACTGAAGCCAAGCAGCAGCAGTTTGAGGAACTTAGAAATGGCATGGAATGGTACTCTGTGTACCACCCTTCGGTTGTGTCCCCGATTGTAGTGAAGTACATCAGGCACCAGAAGAAATGGAACTTTGTGAAGAAGCCTCTTCTTGTGGTGATGGACCCTCAAGGCAAAATAGTGCACACCAATGCTGTTCACATGATGTGTGTTTTCGGAAGTGCAGCATACCCATTCACAAGCAACAGAGAGAGATTGCTCTGGGAAGAAGAGACCTGGAGGATTGAGCTTTTGGCAGATGCCATCGATCAAACTCTACTTAACTGGATTTCGGAAAGGAAGTACATTTGCTTGTATGGCGGGGAAGACATTAACTGGATCCGAAACTTCACAAGGTCTGCAAAAGAAGTTGCCTTGGAAGCTGGTATCGAATTAGAGTTGCTCTATCTCGGCAAGAGCAAGCAGAAGGAGCGAGTGGCCAGGGACATCATCCGCGTTATTAAGGAGGAAAGGCTAAGCCACACCATCGACTGGAACCTCATTTGGTTCTTCTGGGTTCGTCTTGAGAGCATGTGGCAGTCCAAAGGACAGCTTATGAGTGAGCTGTCCAGGGCTAACTTCAGGGACGATAACATAAAAAACGACATCATAATGCAGGGGATTGTGTCACTGCTGAGCTTCGGTTCCAGCGATCGAGGGTGGGCTCTGATCGGGCTTCCTTCATCAGACATGTCTAAGGGTAATGGGGATCACATGTTGAAGAGCATGAACGACTTCAAGATTTGGAAGATTAGGCACAATGAGATGGGGTTCACACCTGCACTGAATGAATATCTTCTTGGGGTGTACAAGAGCGCCCCACATCACTGCACCAGTCTCATACTGCCTGCAACCGGCATCATGCCTGAGACTGTGGCCTGTGCCGAATGTGGTCGTCTCATGGAGAGGTACGCCATGTTCCGCTGCTGCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

841

Amino Acids

95.23

Weight (kDa)

6.34

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_N	PF14576	133 - 433	3.9e-71	Sieve element occlusion N-terminus
SEO_C	PF14577	598 - 839	8.2e-82	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2371
Acc36I	ACCTGC	4 cut(s)	475, 580, 1357, 2371
AccB1I	GGYRCC	2 cut(s)	280, 1659
AccB7I	CCANNNNNTGG	1 cut(s)	2076
AccII	CGCG	2 cut(s)	1008, 2040
AciI	CCGC	4 cut(s)	1006, 1905, 2038, 2506
AclWI	GGATC	5 cut(s)	1127, 1127, 1918, 1931, 2301
AcoI	YGGCCR	2 cut(s)	858, 2022
AcsI	RAATTY	3 cut(s)	423, 675, 818
AcuI	CTGAAG	3 cut(s)	899, 1578, 2149
AcyI	GRCGYC	1 cut(s)	281
AfiI	CCNNNNNNNGG	4 cut(s)	1207, 1624, 2076, 2438
AflIII	ACRYGT	3 cut(s)	583, 2274, 2298
AgsI	TTSAA	6 cut(s)	11, 38, 935, 1267, 2305, 2323
AhlI	ACTAGT	1 cut(s)	914
AjnI	CCWGG	5 cut(s)	1431, 1443, 1820, 2024, 2153
AjuI	GAANNNNNNNTTGG	2 cut(s)	2367, 2399
AleI	CACNNNNGTG	1 cut(s)	1391
Alw21I	GWGCWC	2 cut(s)	966, 1731
Alw26I	GTCTC	7 cut(s)	303, 327, 569, 1811, 2426, 2447, 2486
Alw44I	GTGCAC	1 cut(s)	1727
AlwI	GGATC	5 cut(s)	1127, 1127, 1918, 1931, 2301
ApaLI	GTGCAC	1 cut(s)	1727
ApeKI	GCWGC	6 cut(s)	50, 1567, 1570, 1769, 2508, 2511
ApoI	RAATTY	3 cut(s)	423, 675, 818
Asp700I	GAANNNNTTC	2 cut(s)	2318, 2379
AspA2I	CCTAGG	3 cut(s)	23, 295, 319
AspLEI	GCGC	2 cut(s)	283, 2402
AspS9I	GGNCC	4 cut(s)	4, 751, 997, 1708
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	8 cut(s)	827, 835, 982, 995, 1284, 1423, 1432, 1714
AsuNHI	GCTAGC	1 cut(s)	620
AvaII	GGWCC	3 cut(s)	751, 997, 1708
AvrII	CCTAGG	3 cut(s)	23, 295, 319
BaeGI	GKGCMC	3 cut(s)	244, 262, 1731
BalI	TGGCCA	2 cut(s)	860, 2024
BamHI	GGATCC	1 cut(s)	1923
BanI	GGYRCC	2 cut(s)	280, 1659
BanII	GRGCYC	1 cut(s)	2251
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	1917
Bbv12I	GWGCWC	2 cut(s)	966, 1731
BbvCI	CCTCAGC	1 cut(s)	1397
BbvI	GCAGC	6 cut(s)	62, 1579, 1582, 1781, 2495, 2498
BccI	CCATC	8 cut(s)	620, 806, 1209, 1355, 1699, 1856, 2078, 2344
BceAI	ACGGC	2 cut(s)	352, 944
BciT130I	CCWGG	5 cut(s)	1433, 1445, 1822, 2026, 2155
BciVI	GTATCC	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	7 cut(s)	303, 327, 569, 1811, 2426, 2447, 2486
BcuI	ACTAGT	1 cut(s)	914
BfaI	CTAG	7 cut(s)	24, 276, 296, 320, 621, 899, 915
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	2 cut(s)	284, 2403
BfuAI	ACCTGC	4 cut(s)	475, 580, 1357, 2371
BfuI	GTATCC	1 cut(s)	583
BglI	GCCNNNNNGGC	1 cut(s)	512
BisI	GCNGC	6 cut(s)	51, 1568, 1571, 1770, 2509, 2512
BlnI	CCTAGG	3 cut(s)	23, 295, 319
BlpI	GCTNAGC	3 cut(s)	834, 2060, 2219
BlsI	GCNGC	6 cut(s)	52, 1569, 1572, 1771, 2510, 2513
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	6 cut(s)	558, 1433, 1445, 1822, 2026, 2155
Bme18I	GGWCC	3 cut(s)	751, 997, 1708
BmgT120I	GGNCC	4 cut(s)	4, 751, 997, 1708
BmiI	GGNNCC	8 cut(s)	282, 752, 1536, 1661, 1710, 1925, 2081, 2230
BmrFI	CCNGG	6 cut(s)	558, 1433, 1445, 1822, 2026, 2155
BmsI	GCATC	8 cut(s)	401, 654, 706, 803, 1112, 1290, 1834, 2451
BmtI	GCTAGC	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	1917
BplI	GAGNNNNNCTC	2 cut(s)	948, 980
BpmI	CTGGAG	2 cut(s)	336, 1843
Bpu10I	CCTNAGC	1 cut(s)	1397
Bpu1102I	GCTNAGC	3 cut(s)	834, 2060, 2219
BpuEI	CTTGAG	4 cut(s)	950, 1226, 1698, 2129
BpuMI	CCSGG	1 cut(s)	558
Bsa29I	ATCGAT	2 cut(s)	648, 1851
BsaAI	YACGTR	1 cut(s)	1144
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	2 cut(s)	569, 1811
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	4 cut(s)	1207, 1624, 2076, 2438
Bse118I	RCCGGY	4 cut(s)	86, 107, 128, 2438
Bse1I	ACTGG	9 cut(s)	861, 1079, 1129, 1492, 1516, 1874, 1925, 2081, 2418
BseBI	CCWGG	5 cut(s)	1433, 1445, 1822, 2026, 2155
BseCI	ATCGAT	2 cut(s)	648, 1851
BseGI	GGATG	6 cut(s)	537, 612, 775, 1166, 1345, 2034
BseLI	CCNNNNNNNGG	4 cut(s)	1207, 1624, 2076, 2438
BseMII	CTCAG	9 cut(s)	92, 113, 374, 617, 848, 1310, 1388, 2210, 2442
BseNI	ACTGG	9 cut(s)	861, 1079, 1129, 1492, 1516, 1874, 1925, 2081, 2418
BseRI	GAGGAG	6 cut(s)	318, 321, 342, 345, 1223, 1414
BseSI	GKGCMC	3 cut(s)	244, 262, 1731
BseXI	GCAGC	6 cut(s)	62, 1579, 1582, 1781, 2495, 2498
BseYI	CCCAGC	3 cut(s)	152, 176, 200
BsgI	GTGCAG	6 cut(s)	231, 1335, 1788, 2349, 2398, 2497
Bsh1236I	CGCG	2 cut(s)	1008, 2040
Bsh1285I	CGRYCG	1 cut(s)	2239
BshNI	GGYRCC	2 cut(s)	280, 1659
BshVI	ATCGAT	2 cut(s)	648, 1851
BsiEI	CGRYCG	1 cut(s)	2239
BsiHKAI	GWGCWC	2 cut(s)	966, 1731
BsiSI	CCGG	5 cut(s)	87, 108, 129, 557, 2439
BslFI	GGGAC	5 cut(s)	438, 925, 1618, 2042, 2183
BslI	CCNNNNNNNGG	4 cut(s)	1207, 1624, 2076, 2438
BsmAI	GTCTC	7 cut(s)	303, 327, 569, 1811, 2426, 2447, 2486
BsmBI	CGTCTC	2 cut(s)	327, 2486
BsmFI	GGGAC	5 cut(s)	438, 925, 1618, 2042, 2183
BsmI	GAATGC	2 cut(s)	663, 1262
Bso31I	GGTCTC	2 cut(s)	569, 1811
Bsp1286I	GDGCHC	5 cut(s)	244, 262, 966, 1731, 2251
Bsp1407I	TGTACA	1 cut(s)	2391
Bsp1720I	GCTNAGC	3 cut(s)	834, 2060, 2219
Bsp19I	CCATGG	2 cut(s)	541, 732
BspACI	CCGC	4 cut(s)	1006, 1905, 2038, 2506
BspCNI	CTCAG	9 cut(s)	91, 112, 373, 618, 847, 1311, 1389, 2211, 2443
BspDI	ATCGAT	2 cut(s)	648, 1851
BspFNI	CGCG	2 cut(s)	1008, 2040
BspLI	GGNNCC	8 cut(s)	282, 752, 1536, 1661, 1710, 1925, 2081, 2230
BspMI	ACCTGC	4 cut(s)	475, 580, 1357, 2371
BspOI	GCTAGC	1 cut(s)	624
BspPI	GGATC	5 cut(s)	1127, 1127, 1918, 1931, 2301
BspQI	GCTCTTC	1 cut(s)	2300
BspT107I	GGYRCC	2 cut(s)	280, 1659
BspTNI	GGTCTC	2 cut(s)	569, 1811
BsrFI	RCCGGY	4 cut(s)	86, 107, 128, 2438
BsrGI	TGTACA	1 cut(s)	2391
BsrI	ACTGG	9 cut(s)	861, 1079, 1129, 1492, 1516, 1874, 1925, 2081, 2418
BssAI	RCCGGY	4 cut(s)	86, 107, 128, 2438
BssNI	GRCGYC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	8 cut(s)	23, 295, 319, 541, 732, 789, 1170, 1959
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	5 cut(s)	1433, 1445, 1822, 2026, 2155
Bst4CI	ACNGT	6 cut(s)	292, 314, 344, 550, 1081, 2458
Bst6I	CTCTTC	5 cut(s)	474, 1370, 1698, 1809, 2300
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	2 cut(s)	800, 1268
BstAUI	TGTACA	1 cut(s)	2391
BstBAI	YACGTR	1 cut(s)	1144
BstC8I	GCNNGC	7 cut(s)	130, 622, 721, 786, 1279, 2006, 2433
BstDSI	CCRYGG	2 cut(s)	541, 732
BstEII	GGTNACC	1 cut(s)	970
BstF5I	GGATG	6 cut(s)	537, 612, 775, 1166, 1345, 2034
BstFNI	CGCG	2 cut(s)	1008, 2040
BstH2I	RGCGCY	2 cut(s)	284, 2403
BstHHI	GCGC	2 cut(s)	283, 2402
BstMAI	GTCTC	7 cut(s)	303, 327, 569, 1811, 2426, 2447, 2486
BstMCI	CGRYCG	1 cut(s)	2239
BstMWI	GCNNNNNNNGC	8 cut(s)	512, 617, 630, 800, 1268, 1902, 1964, 2014
BstNI	CCWGG	5 cut(s)	1433, 1445, 1822, 2026, 2155
BstNSI	RCATGY	4 cut(s)	587, 2119, 2278, 2302
BstPI	GGTNACC	1 cut(s)	970
BstSCI	CCNGG	6 cut(s)	556, 1431, 1443, 1820, 2024, 2153
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	3 cut(s)	244, 262, 1731
BstSNI	TACGTA	1 cut(s)	1144
BstUI	CGCG	2 cut(s)	1008, 2040
BstV1I	GCAGC	6 cut(s)	62, 1579, 1582, 1781, 2495, 2498
BstV2I	GAAGAC	1 cut(s)	1917
BstX2I	RGATCY	1 cut(s)	1923
BstXI	CCANNNNNNTGG	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	1923
Bsu15I	ATCGAT	2 cut(s)	648, 1851
BsuI	GTATCC	1 cut(s)	583
BsuTUI	ATCGAT	2 cut(s)	648, 1851
BtgI	CCRYGG	2 cut(s)	541, 732
BtsCI	GGATG	6 cut(s)	537, 612, 775, 1166, 1345, 2034
BtsI	GCAGTG	3 cut(s)	1062, 2213, 2410
BveI	ACCTGC	4 cut(s)	475, 580, 1357, 2371
Cac8I	GCNNGC	7 cut(s)	130, 622, 721, 786, 1279, 2006, 2433
CfoI	GCGC	2 cut(s)	283, 2402
Cfr10I	RCCGGY	4 cut(s)	86, 107, 128, 2438
Cfr13I	GGNCC	4 cut(s)	4, 751, 997, 1708
ClaI	ATCGAT	2 cut(s)	648, 1851
DinI	GGCGCC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	921
EaeI	YGGCCR	2 cut(s)	858, 2022
Eam1104I	CTCTTC	5 cut(s)	474, 1370, 1698, 1809, 2300
EarI	CTCTTC	5 cut(s)	474, 1370, 1698, 1809, 2300
Eco105I	TACGTA	1 cut(s)	1144
Eco130I	CCWWGG	8 cut(s)	23, 295, 319, 541, 732, 789, 1170, 1959
Eco24I	GRGCYC	1 cut(s)	2251
Eco31I	GGTCTC	2 cut(s)	569, 1811
Eco47I	GGWCC	3 cut(s)	751, 997, 1708
Eco57I	CTGAAG	3 cut(s)	899, 1578, 2149
Eco91I	GGTNACC	1 cut(s)	970
EcoO109I	RGGNCCY	1 cut(s)	997
EcoO65I	GGTNACC	1 cut(s)	970
EcoRII	CCWGG	5 cut(s)	1431, 1443, 1820, 2024, 2153
EcoT14I	CCWWGG	8 cut(s)	23, 295, 319, 541, 732, 789, 1170, 1959
EcoT38I	GRGCYC	1 cut(s)	2251
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	8 cut(s)	23, 295, 319, 541, 732, 789, 1170, 1959
Esp3I	CGTCTC	2 cut(s)	327, 2486
FalI	AAGNNNNNCTT	6 cut(s)	54, 86, 768, 800, 2121, 2153
FaqI	GGGAC	5 cut(s)	438, 925, 1618, 2042, 2183
FauI	CCCGC	1 cut(s)	1898
Fnu4HI	GCNGC	6 cut(s)	51, 1568, 1571, 1770, 2509, 2512
FokI	GGATG	6 cut(s)	524, 599, 782, 1153, 1352, 2021
FriOI	GRGCYC	1 cut(s)	2251
Fsp4HI	GCNGC	6 cut(s)	51, 1568, 1571, 1770, 2509, 2512
FspBI	CTAG	7 cut(s)	24, 276, 296, 320, 621, 899, 915
GlaI	GCGC	2 cut(s)	282, 2401
GluI	GCNGC	6 cut(s)	51, 1568, 1571, 1770, 2509, 2512
GsaI	CCCAGC	3 cut(s)	156, 180, 204
GsuI	CTGGAG	2 cut(s)	336, 1843
HaeII	RGCGCY	2 cut(s)	284, 2403
HapII	CCGG	5 cut(s)	87, 108, 129, 557, 2439
HhaI	GCGC	2 cut(s)	283, 2402
Hin1I	GRCGYC	1 cut(s)	281
Hin6I	GCGC	2 cut(s)	281, 2400
HinP1I	GCGC	2 cut(s)	281, 2400
HincII	GTYRAC	2 cut(s)	31, 523
HindII	GTYRAC	2 cut(s)	31, 523
HinfI	GANTC	2 cut(s)	1224, 1289
HpaII	CCGG	5 cut(s)	87, 108, 129, 557, 2439
HphI	GGTGA	8 cut(s)	827, 835, 982, 995, 1284, 1423, 1432, 1714
Hpy188III	TCNNGA	6 cut(s)	62, 1084, 1136, 1205, 2108, 2323
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	7 cut(s)	17, 601, 1010, 1399, 1632, 2005, 2274
HpyCH4III	ACNGT	6 cut(s)	292, 314, 344, 550, 1081, 2458
HpyCH4IV	ACGT	2 cut(s)	451, 1143
HpyF10VI	GCNNNNNNNGC	8 cut(s)	512, 617, 630, 800, 1268, 1902, 1964, 2014
HpySE526I	ACGT	2 cut(s)	451, 1143
Hsp92I	GRCGYC	1 cut(s)	281
HspAI	GCGC	2 cut(s)	281, 2400
KasI	GGCGCC	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	2300
LmnI	GCTCC	1 cut(s)	2014
Lsp1109I	GCAGC	6 cut(s)	62, 1579, 1582, 1781, 2495, 2498
LweI	GCATC	8 cut(s)	401, 654, 706, 803, 1112, 1290, 1834, 2451
MaeI	CTAG	7 cut(s)	24, 276, 296, 320, 621, 899, 915
MaeII	ACGT	2 cut(s)	451, 1143
MaeIII	GTNAC	5 cut(s)	314, 970, 1144, 1290, 2211
MfeI	CAATTG	3 cut(s)	576, 1272, 1549
MflI	RGATCY	1 cut(s)	1923
MhlI	GDGCHC	5 cut(s)	244, 262, 966, 1731, 2251
MlsI	TGGCCA	2 cut(s)	860, 2024
MluCI	AATT	7 cut(s)	423, 576, 675, 818, 1272, 1549, 1976
MluNI	TGGCCA	2 cut(s)	860, 2024
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	1218, 1298
MmeI	TCCRAC	1 cut(s)	680
Mox20I	TGGCCA	2 cut(s)	860, 2024
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	2318, 2379
MscI	TGGCCA	2 cut(s)	860, 2024
MseI	TTAA	6 cut(s)	669, 920, 1019, 1866, 1917, 2046
MslI	CAYNNNNRTG	3 cut(s)	1391, 1734, 2195
Msp20I	TGGCCA	2 cut(s)	860, 2024
MspA1I	CMGCKG	1 cut(s)	2508
MspI	CCGG	5 cut(s)	87, 108, 129, 557, 2439
MspR9I	CCNGG	6 cut(s)	558, 1433, 1445, 1822, 2026, 2155
MunI	CAATTG	3 cut(s)	576, 1272, 1549
Mva1269I	GAATGC	2 cut(s)	663, 1262
MvaI	CCWGG	5 cut(s)	1433, 1445, 1822, 2026, 2155
MvnI	CGCG	2 cut(s)	1008, 2040
MwoI	GCNNNNNNNGC	8 cut(s)	512, 617, 630, 800, 1268, 1902, 1964, 2014
NaeI	GCCGGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	558
NcoI	CCATGG	2 cut(s)	541, 732
NgoMIV	GCCGGC	1 cut(s)	128
NheI	GCTAGC	1 cut(s)	620
NlaIV	GGNNCC	8 cut(s)	282, 752, 1536, 1661, 1710, 1925, 2081, 2230
NmeAIII	GCCGAG	2 cut(s)	326, 1974
NmuCI	GTSAC	3 cut(s)	970, 1290, 2211
NspI	RCATGY	4 cut(s)	587, 2119, 2278, 2302
OliI	CACNNNNGTG	1 cut(s)	1391
PaqCI	CACCTGC	1 cut(s)	2371
PciI	ACATGT	3 cut(s)	583, 2274, 2298
PciSI	GCTCTTC	1 cut(s)	2300
PcsI	WCGNNNNNNNCGW	2 cut(s)	645, 2232
PctI	GAATGC	2 cut(s)	663, 1262
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	2 cut(s)	2318, 2379
PflMI	CCANNNNNTGG	1 cut(s)	2076
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	6 cut(s)	52, 1569, 1572, 1771, 2510, 2513
Ple19I	CGATCG	1 cut(s)	2239
PleI	GAGTC	2 cut(s)	1218, 1297
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	2 cut(s)	1218, 1297
Ppu21I	YACGTR	1 cut(s)	1144
PpuMI	RGGWCCY	1 cut(s)	997
PscI	ACATGT	3 cut(s)	583, 2274, 2298
Psp5II	RGGWCCY	1 cut(s)	997
Psp6I	CCWGG	5 cut(s)	1431, 1443, 1820, 2024, 2153
PspEI	GGTNACC	1 cut(s)	970
PspFI	CCCAGC	3 cut(s)	152, 176, 200
PspGI	CCWGG	5 cut(s)	1431, 1443, 1820, 2024, 2153
PspN4I	GGNNCC	8 cut(s)	282, 752, 1536, 1661, 1710, 1925, 2081, 2230
PspPI	GGNCC	4 cut(s)	4, 751, 997, 1708
PspPPI	RGGWCCY	1 cut(s)	997
PsrI	GAACNNNNNNTAC	2 cut(s)	2486, 2518
PsuI	RGATCY	1 cut(s)	1923
PvuI	CGATCG	1 cut(s)	2239
RseI	CAYNNNNRTG	3 cut(s)	1391, 1734, 2195
SapI	GCTCTTC	1 cut(s)	2300
SaqAI	TTAA	6 cut(s)	669, 920, 1019, 1866, 1917, 2046
SatI	GCNGC	6 cut(s)	51, 1568, 1571, 1770, 2509, 2512
Sau96I	GGNCC	4 cut(s)	4, 751, 997, 1708
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	2 cut(s)	1218, 1298
ScrFI	CCNGG	6 cut(s)	558, 1433, 1445, 1822, 2026, 2155
SduI	GDGCHC	5 cut(s)	244, 262, 966, 1731, 2251
SfaNI	GCATC	8 cut(s)	401, 654, 706, 803, 1112, 1290, 1834, 2451
SfcI	CTRYAG	1 cut(s)	549
SfoI	GGCGCC	1 cut(s)	282
SinI	GGWCC	3 cut(s)	751, 997, 1708
SmiMI	CAYNNNNRTG	3 cut(s)	1391, 1734, 2195
SmlI	CTYRAG	4 cut(s)	965, 1205, 1713, 2108
SmoI	CTYRAG	4 cut(s)	965, 1205, 1713, 2108
SnaBI	TACGTA	1 cut(s)	1144
SpeI	ACTAGT	1 cut(s)	914
Sse9I	AATT	7 cut(s)	423, 576, 675, 818, 1272, 1549, 1976
SsiI	CCGC	4 cut(s)	1006, 1905, 2038, 2506
SspDI	GGCGCC	1 cut(s)	280
SspMI	CTAG	7 cut(s)	24, 276, 296, 320, 621, 899, 915
StyD4I	CCNGG	6 cut(s)	556, 1431, 1443, 1820, 2024, 2153
StyI	CCWWGG	8 cut(s)	23, 295, 319, 541, 732, 789, 1170, 1959
TaaI	ACNGT	6 cut(s)	292, 314, 344, 550, 1081, 2458
TaiI	ACGT	2 cut(s)	454, 1146
TaqI	TCGA	7 cut(s)	501, 648, 1185, 1851, 1974, 2073, 2239
TasI	AATT	7 cut(s)	423, 576, 675, 818, 1272, 1549, 1976
TatI	WGTACW	5 cut(s)	218, 1476, 1650, 1887, 2391
Tru1I	TTAA	6 cut(s)	669, 920, 1019, 1866, 1917, 2046
Tru9I	TTAA	6 cut(s)	669, 920, 1019, 1866, 1917, 2046
TseFI	GTSAC	3 cut(s)	970, 1290, 2211
TseI	GCWGC	6 cut(s)	50, 1567, 1570, 1769, 2508, 2511
Tsp45I	GTSAC	3 cut(s)	970, 1290, 2211
TspDTI	ATGAA	8 cut(s)	462, 687, 786, 977, 1269, 2256, 2327, 2388
Van91I	CCANNNNNTGG	1 cut(s)	2076
VneI	GTGCAC	1 cut(s)	1727
VpaK11BI	GGWCC	3 cut(s)	751, 997, 1708
XapI	RAATTY	3 cut(s)	423, 675, 818
XceI	RCATGY	4 cut(s)	587, 2119, 2278, 2302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmaJI	CCTAGG	3 cut(s)	23, 295, 319
XmnI	GAANNNNTTC	2 cut(s)	2318, 2379
XspI	CTAG	7 cut(s)	24, 276, 296, 320, 621, 899, 915
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.