Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Reverse (-)

62524830 .. 62529408

Gene Structure 4579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG315100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGGCCCTTCAACCTCAAACCCCTAGGGTCAACTTTCAAACCGCCCTTGCAGCACCTCGTCAAGACAACCTTGCAACTCAAACTGCCGGCCTTGTACCTCAAACTGCCGGCCTTGTGCCTCAACAAACTCCCGGCCTTGTGCCTCAACAAAATCCCAGCCTTGTGCCTCAACAAAATCCCAGCCTTGTGCCTCAAAGTACTGCCCTTGTACCTCAAAGTGCCCCTGCACCTCAAAGTGCCCCTGCACCTCAAACTAGGGCGCCCGCCACTGTCCTAGGCCGAGGAGGAGACAACTACCCGGGAAGAGGAGGAGACAACTACCTAGGCAGAGGAGGAGACGGCTACCGTACTACTCCAGCTACTCAGCTCGGTAGAGATCGTCGTCAGTATTCAGCATCATCAGATGACAATACATTGACCAACCAAATTCTGATGACTGATAGATCTCATGAACGTCCCTACGATGTGCCTCTTCTATCTGTCAAGCAGGTTCTCCAAACAATCGAGGCCATTCTGGCTCGTGTCAACAAACCACTTGACATCCATGGCACTGTTGTTCCGGGAGGTCTCGTACCTGCAACTGCACATGTGGATACTTTGGAACATGAGAAGGCCATCCATGCTAGCCTGAGTAGCCTCCACGACAGCATCGAAGTTCCAACCAGCATTCTTAATGAAATTTCCAGCGAGATACTTAGCAAGTCTCTAACAGGGGTAGATGCAAGCAAGACCACCATGGATATTTTAGAGAGGGTCCAGCACTACGATTGGGACGAAAAGGTGGTGCTTGCCTTGGCATCTTTTGCGATCAAAGATGGTGAATTTTGGCTTGTGGCTCAGCTTTTCACCACCAACGCACTGGCCAAAGCCATCGGACTACTGAAGCAAATGCAAGAGATACTAGAACGATCTGGGACTAGTTTAAAACCGAAGTTTGAAGCATACAACAATCTGGTTAGAGCCGTGCTCAAGGTGACCAAGATCATTGTTCATTTACAGGACCTTCACCGCGACCCCCACTTAACTGCTGAAATCAAAGCTACATCTCCCACTAATCATATCCCCACTGCTGTTTACTGGACTGTCAGGAGTATAGTCATTCTTGAATCACAACTTTTAGGGATCACTGGCTCTGATCCAGAGTACGTAACAGAGGCATGGGAACTATCATCCTTGGCACACAAGCTCGAAAACATATACAACCATCTTGAGGAGAACCTAAACAGACTCTATCAACTCATTCAGAAGTTCAGAGATGAAGAAGCATTCAATGCAATTGCACGCATCTTAGAGTCACCACATATTGATAACTCCAAGCCTCTGAGGGTTTTGTTTTACAAGGATGACCAACCTGCACTCTATGATGGCTACAACAAGAAGAGGGTTGACATTGATGTGCTGAGGAGGAAGGTGGTGATACTGATGATTTCAGACCTGGACATCACCCAGGAAAATGAGTACCTGATTGCTCATCAAATGTACTCGGAGAAACGCCAGTTCCCACAAAGGCCAGAGAGCCAGTACGAGATTGTCTGGGTTCCAATTGTGGACAATTGGACTGAAGCCAAGCAGCTGCAGTTTGAGGAACTTAGAAATGGCATGGAATGGTACACTATCTACCACCCTTCGGTTGTGTCTCCGATTGTGGTGAAGTACATCAGGCACCAGCAGAAATGGAACTTTGTGAAGAAGCCTCTGCTTGTGGTGATGGACCCTCAAGGCAAAATAGTGCACACCAATGCTGTTCACATGATGTGTGTTTTCGGAAGTGCAGCATACCCATTCACAAGCAACAGAGAGAGATTGCTCTGGGAAGAAGAGACCTGGAGGATTGAGCTTTTGGCAGACGCCATCGATCAAACTCTACTTAACTGGATTTCAGAAAGGAAGTACATTTGCTTGTATGGCGGGGAAGACATTAACTGGATCCGAAGCTTCACAAGGTCTGCAAAAGAAGTTGCCTTGGAAGCTGGTATCGAATTAGAGTTGCTCTATCTTGGCAAGAGCAAGCAGAAGGAGCGAGTGGCCAGGGACATCATCCGTGTTATTAAGGAGGAGAGGCTAAGCCACACCATCGACTGGAACCTCATTTGGTTCTTCTGGGTTCGTCTTGAGAGCATGTGGCAGTCCAAAGGACAGCTTATGAGTGAGCTGTCCAGGGCTAACTTCAGGGACGATAACATAAAAAACGACATCATAATGCAGGGGATTGTGTCACTGCTGAGCTTCGGTTCCAGCGATCGGGGGTGGGCTCTGATCGGGCTTCCTTCATCAGACATGTCCAAGGGTAATGGGGATCACATGTTGAAGAGCATGAACGACTTCAAGATTTGGAAGATTAGGCACAATGAGACGGGCTTCACACCTGCACTGAATGAATATCTTCTTGGGGTGTACAAGAGCGCCCCACATCACTGCACCAGTCTCATACTGCCTGCAACCGGCATCATGCCTGAGACTGTGAGTTGTGCCGAATGTGGTCGTCTCATGGAGAGGTACGCCATGTTCCGCTGCTGCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

841

Amino Acids

95.25

Weight (kDa)

6.21

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_N	PF14576	134 - 434	6.4e-70	Sieve element occlusion N-terminus
SEO_C	PF14577	599 - 840	8e-82	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2374
Acc36I	ACCTGC	4 cut(s)	478, 583, 1360, 2374
AccB1I	GGYRCC	2 cut(s)	259, 1662
AccB7I	CCANNNNNTGG	1 cut(s)	2079
AccII	CGCG	1 cut(s)	1011
AciI	CCGC	5 cut(s)	42, 264, 1009, 1908, 2509
AclWI	GGATC	5 cut(s)	1130, 1130, 1921, 1934, 2304
AcoI	YGGCCR	2 cut(s)	861, 2025
AcsI	RAATTY	3 cut(s)	426, 678, 821
AcuI	CTGAAG	3 cut(s)	902, 1581, 2152
AcyI	GRCGYC	2 cut(s)	260, 1848
AfiI	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
AflIII	ACRYGT	3 cut(s)	586, 2277, 2301
AgsI	TTSAA	7 cut(s)	11, 38, 938, 1106, 1270, 2308, 2326
AhlI	ACTAGT	1 cut(s)	917
AjnI	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
AjuI	GAANNNNNNNTTGG	2 cut(s)	2370, 2402
Alw21I	GWGCWC	2 cut(s)	969, 1734
Alw44I	GTGCAC	1 cut(s)	1730
AlwI	GGATC	5 cut(s)	1130, 1130, 1921, 1934, 2304
Ama87I	CYCGRG	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	1730
ApeKI	GCWGC	6 cut(s)	50, 1570, 1573, 1772, 2511, 2514
ApoI	RAATTY	3 cut(s)	426, 678, 821
Asp700I	GAANNNNTTC	2 cut(s)	2321, 2382
AspA2I	CCTAGG	3 cut(s)	23, 274, 322
AspLEI	GCGC	2 cut(s)	262, 2405
AspS9I	GGNCC	4 cut(s)	4, 754, 1000, 1711
AsuC2I	CCSGG	4 cut(s)	132, 299, 300, 561
AsuHPI	GGTGA	9 cut(s)	830, 838, 985, 998, 1287, 1426, 1435, 1660, 1717
AsuNHI	GCTAGC	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	3 cut(s)	754, 1000, 1711
AvrII	CCTAGG	3 cut(s)	23, 274, 322
BaeGI	GKGCMC	3 cut(s)	223, 241, 1734
BalI	TGGCCA	2 cut(s)	863, 2027
BamHI	GGATCC	1 cut(s)	1926
BanI	GGYRCC	2 cut(s)	259, 1662
BanII	GRGCYC	1 cut(s)	2254
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	1920
Bbv12I	GWGCWC	2 cut(s)	969, 1734
BbvCI	CCTCAGC	1 cut(s)	1400
BbvI	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
BccI	CCATC	8 cut(s)	623, 809, 878, 1212, 1358, 1702, 1859, 2081
BceAI	ACGGC	2 cut(s)	355, 947
BciT130I	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	4 cut(s)	132, 299, 300, 561
BcuI	ACTAGT	1 cut(s)	917
BfaI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
BfmI	CTRYAG	1 cut(s)	1574
BfoI	RGCGCY	2 cut(s)	263, 2406
BfuAI	ACCTGC	4 cut(s)	478, 583, 1360, 2374
BfuI	GTATCC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	515
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
BlnI	CCTAGG	3 cut(s)	23, 274, 322
BlpI	GCTNAGC	3 cut(s)	837, 2063, 2222
BlsI	GCNGC	6 cut(s)	52, 1572, 1575, 1774, 2513, 2516
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
Bme18I	GGWCC	3 cut(s)	754, 1000, 1711
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	4 cut(s)	4, 754, 1000, 1711
BmiI	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
BmrFI	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
BmsI	GCATC	6 cut(s)	404, 657, 709, 806, 1293, 2454
BmtI	GCTAGC	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	1920
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
BpmI	CTGGAG	2 cut(s)	339, 1846
Bpu10I	CCTNAGC	1 cut(s)	1400
Bpu1102I	GCTNAGC	3 cut(s)	837, 2063, 2222
BpuEI	CTTGAG	4 cut(s)	953, 1229, 1701, 2132
BpuMI	CCSGG	4 cut(s)	132, 299, 300, 561
Bsa29I	ATCGAT	1 cut(s)	1854
BsaAI	YACGTR	1 cut(s)	1147
BsaHI	GRCGYC	2 cut(s)	260, 1848
BsaI	GGTCTC	2 cut(s)	572, 1814
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
Bse118I	RCCGGY	3 cut(s)	86, 107, 2441
Bse1I	ACTGG	9 cut(s)	864, 1082, 1132, 1495, 1519, 1877, 1928, 2084, 2421
BseBI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
BseCI	ATCGAT	1 cut(s)	1854
BseGI	GGATG	5 cut(s)	540, 615, 1169, 1348, 2037
BseLI	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
BseMII	CTCAG	7 cut(s)	377, 620, 851, 1313, 1391, 2213, 2445
BseNI	ACTGG	9 cut(s)	864, 1082, 1132, 1495, 1519, 1877, 1928, 2084, 2421
BseRI	GAGGAG	9 cut(s)	297, 300, 321, 324, 345, 348, 1226, 1417, 2069
BseSI	GKGCMC	3 cut(s)	223, 241, 1734
BseXI	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
BseYI	CCCAGC	2 cut(s)	155, 179
BsgI	GTGCAG	8 cut(s)	210, 228, 567, 1338, 1791, 2352, 2401, 2500
Bsh1236I	CGCG	1 cut(s)	1011
Bsh1285I	CGRYCG	1 cut(s)	2242
BshNI	GGYRCC	2 cut(s)	259, 1662
BshVI	ATCGAT	1 cut(s)	1854
BsiEI	CGRYCG	1 cut(s)	2242
BsiHKAI	GWGCWC	2 cut(s)	969, 1734
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
BslFI	GGGAC	5 cut(s)	441, 785, 928, 2045, 2186
BslI	CCNNNNNNNGG	6 cut(s)	305, 1210, 1627, 2079, 2241, 2441
BsmBI	CGTCTC	3 cut(s)	330, 2345, 2489
BsmFI	GGGAC	5 cut(s)	441, 785, 928, 2045, 2186
BsmI	GAATGC	2 cut(s)	666, 1265
Bso31I	GGTCTC	2 cut(s)	572, 1814
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	5 cut(s)	223, 241, 969, 1734, 2254
Bsp1407I	TGTACA	1 cut(s)	2394
Bsp1720I	GCTNAGC	3 cut(s)	837, 2063, 2222
Bsp19I	CCATGG	2 cut(s)	544, 735
BspACI	CCGC	5 cut(s)	42, 264, 1009, 1908, 2509
BspCNI	CTCAG	7 cut(s)	376, 621, 850, 1314, 1392, 2214, 2446
BspDI	ATCGAT	1 cut(s)	1854
BspFNI	CGCG	1 cut(s)	1011
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
BspMAI	CTGCAG	1 cut(s)	1578
BspMI	ACCTGC	4 cut(s)	478, 583, 1360, 2374
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	5 cut(s)	1130, 1130, 1921, 1934, 2304
BspQI	GCTCTTC	1 cut(s)	2303
BspT107I	GGYRCC	2 cut(s)	259, 1662
BspTNI	GGTCTC	2 cut(s)	572, 1814
BsrFI	RCCGGY	3 cut(s)	86, 107, 2441
BsrGI	TGTACA	1 cut(s)	2394
BsrI	ACTGG	9 cut(s)	864, 1082, 1132, 1495, 1519, 1877, 1928, 2084, 2421
BssAI	RCCGGY	3 cut(s)	86, 107, 2441
BssNI	GRCGYC	2 cut(s)	260, 1848
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
Bst4CI	ACNGT	5 cut(s)	271, 347, 553, 1084, 2461
Bst6I	CTCTTC	5 cut(s)	298, 477, 1373, 1812, 2303
BstACI	GRCGYC	2 cut(s)	260, 1848
BstAPI	GCANNNNNTGC	2 cut(s)	803, 1271
BstAUI	TGTACA	1 cut(s)	2394
BstBAI	YACGTR	1 cut(s)	1147
BstC8I	GCNNGC	9 cut(s)	88, 109, 264, 625, 724, 789, 1282, 2009, 2436
BstDSI	CCRYGG	2 cut(s)	544, 735
BstEII	GGTNACC	1 cut(s)	973
BstF5I	GGATG	5 cut(s)	540, 615, 1169, 1348, 2037
BstFNI	CGCG	1 cut(s)	1011
BstH2I	RGCGCY	2 cut(s)	263, 2406
BstHHI	GCGC	2 cut(s)	262, 2405
BstMCI	CGRYCG	1 cut(s)	2242
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 515, 620, 633, 803, 1271, 1905, 1967, 2017
BstNI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
BstNSI	RCATGY	4 cut(s)	590, 2122, 2281, 2305
BstPI	GGTNACC	1 cut(s)	973
BstSCI	CCNGG	9 cut(s)	130, 297, 298, 559, 1434, 1446, 1823, 2027, 2156
BstSFI	CTRYAG	1 cut(s)	1574
BstSLI	GKGCMC	3 cut(s)	223, 241, 1734
BstSNI	TACGTA	1 cut(s)	1147
BstUI	CGCG	1 cut(s)	1011
BstV1I	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
BstV2I	GAAGAC	1 cut(s)	1920
BstX2I	RGATCY	2 cut(s)	443, 1926
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	2 cut(s)	443, 1926
Bsu15I	ATCGAT	1 cut(s)	1854
BsuI	GTATCC	1 cut(s)	586
BsuTUI	ATCGAT	1 cut(s)	1854
BtgI	CCRYGG	2 cut(s)	544, 735
BtsCI	GGATG	5 cut(s)	540, 615, 1169, 1348, 2037
BtsI	GCAGTG	3 cut(s)	1065, 2216, 2413
BtsIMutI	CAGTG	9 cut(s)	267, 549, 857, 1065, 1125, 2216, 2369, 2413, 2517
BveI	ACCTGC	4 cut(s)	478, 583, 1360, 2374
Cac8I	GCNNGC	9 cut(s)	88, 109, 264, 625, 724, 789, 1282, 2009, 2436
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	262, 2405
Cfr10I	RCCGGY	3 cut(s)	86, 107, 2441
Cfr13I	GGNCC	4 cut(s)	4, 754, 1000, 1711
Cfr9I	CCCGGG	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	1854
CseI	GACGC	1 cut(s)	1856
DinI	GGCGCC	1 cut(s)	261
DraI	TTTAAA	1 cut(s)	924
EaeI	YGGCCR	2 cut(s)	861, 2025
Eam1104I	CTCTTC	5 cut(s)	298, 477, 1373, 1812, 2303
EarI	CTCTTC	5 cut(s)	298, 477, 1373, 1812, 2303
Eco105I	TACGTA	1 cut(s)	1147
Eco130I	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
Eco24I	GRGCYC	1 cut(s)	2254
Eco31I	GGTCTC	2 cut(s)	572, 1814
Eco47I	GGWCC	3 cut(s)	754, 1000, 1711
Eco57I	CTGAAG	3 cut(s)	902, 1581, 2152
Eco88I	CYCGRG	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	973
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	973
EcoRII	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
EcoT14I	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
EcoT38I	GRGCYC	1 cut(s)	2254
EgeI	GGCGCC	1 cut(s)	261
EheI	GGCGCC	1 cut(s)	261
ErhI	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
Esp3I	CGTCTC	3 cut(s)	330, 2345, 2489
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 2124, 2156
FaqI	GGGAC	5 cut(s)	441, 785, 928, 2045, 2186
FauI	CCCGC	2 cut(s)	271, 1901
Fnu4HI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
FokI	GGATG	5 cut(s)	527, 602, 1156, 1355, 2024
FriOI	GRGCYC	1 cut(s)	2254
Fsp4HI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
FspBI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
GlaI	GCGC	2 cut(s)	261, 2404
GluI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
GsaI	CCCAGC	2 cut(s)	159, 183
GsuI	CTGGAG	2 cut(s)	339, 1846
HaeII	RGCGCY	2 cut(s)	263, 2406
HapII	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
HgaI	GACGC	1 cut(s)	1856
HhaI	GCGC	2 cut(s)	262, 2405
Hin1I	GRCGYC	2 cut(s)	260, 1848
Hin6I	GCGC	2 cut(s)	260, 2403
HinP1I	GCGC	2 cut(s)	260, 2403
HincII	GTYRAC	3 cut(s)	31, 526, 1387
HindII	GTYRAC	3 cut(s)	31, 526, 1387
HindIII	AAGCTT	1 cut(s)	1933
HinfI	GANTC	3 cut(s)	1106, 1227, 1292
HpaII	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
HphI	GGTGA	9 cut(s)	830, 838, 985, 998, 1287, 1426, 1435, 1660, 1717
Hpy166II	GTNNAC	9 cut(s)	31, 526, 1075, 1387, 1549, 1611, 1732, 1747, 2395
Hpy188III	TCNNGA	8 cut(s)	62, 449, 1087, 1103, 1139, 1208, 2111, 2326
Hpy8I	GTNNAC	9 cut(s)	31, 526, 1075, 1387, 1549, 1611, 1732, 1747, 2395
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	7 cut(s)	17, 604, 1013, 1402, 1635, 2008, 2277
HpyCH4III	ACNGT	5 cut(s)	271, 347, 553, 1084, 2461
HpyCH4IV	ACGT	2 cut(s)	454, 1146
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 515, 620, 633, 803, 1271, 1905, 1967, 2017
HpySE526I	ACGT	2 cut(s)	454, 1146
Hsp92I	GRCGYC	2 cut(s)	260, 1848
HspAI	GCGC	2 cut(s)	260, 2403
KasI	GGCGCC	1 cut(s)	259
KroI	GCCGGC	2 cut(s)	86, 107
KroNI	GCCGGC	2 cut(s)	88, 109
LguI	GCTCTTC	1 cut(s)	2303
LmnI	GCTCC	1 cut(s)	2017
Lsp1109I	GCAGC	6 cut(s)	62, 1560, 1582, 1784, 2498, 2501
LweI	GCATC	6 cut(s)	404, 657, 709, 806, 1293, 2454
MaeI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
MaeII	ACGT	2 cut(s)	454, 1146
MaeIII	GTNAC	4 cut(s)	973, 1147, 1293, 2214
MfeI	CAATTG	3 cut(s)	1275, 1542, 1552
MflI	RGATCY	2 cut(s)	443, 1926
MhlI	GDGCHC	5 cut(s)	223, 241, 969, 1734, 2254
MlsI	TGGCCA	2 cut(s)	863, 2027
MluCI	AATT	7 cut(s)	426, 678, 821, 1275, 1542, 1552, 1979
MluNI	TGGCCA	2 cut(s)	863, 2027
Mly113I	GGCGCC	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	1221, 1301
MmeI	TCCRAC	1 cut(s)	683
Mox20I	TGGCCA	2 cut(s)	863, 2027
MroNI	GCCGGC	2 cut(s)	86, 107
MroXI	GAANNNNTTC	2 cut(s)	2321, 2382
MscI	TGGCCA	2 cut(s)	863, 2027
MseI	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
MslI	CAYNNNNRTG	3 cut(s)	1394, 1737, 2198
Msp20I	TGGCCA	2 cut(s)	863, 2027
MspA1I	CMGCKG	2 cut(s)	1573, 2511
MspI	CCGG	6 cut(s)	87, 108, 132, 299, 560, 2442
MspR9I	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
MunI	CAATTG	3 cut(s)	1275, 1542, 1552
Mva1269I	GAATGC	2 cut(s)	666, 1265
MvaI	CCWGG	5 cut(s)	1436, 1448, 1825, 2029, 2158
MvnI	CGCG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	9 cut(s)	50, 515, 620, 633, 803, 1271, 1905, 1967, 2017
NaeI	GCCGGC	2 cut(s)	88, 109
NarI	GGCGCC	1 cut(s)	260
NciI	CCSGG	4 cut(s)	132, 299, 300, 561
NcoI	CCATGG	2 cut(s)	544, 735
NgoMIV	GCCGGC	2 cut(s)	86, 107
NheI	GCTAGC	1 cut(s)	623
NlaIV	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	973, 1293, 2214
NspI	RCATGY	4 cut(s)	590, 2122, 2281, 2305
PagI	TCATGA	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	2374
PciI	ACATGT	3 cut(s)	586, 2277, 2301
PciSI	GCTCTTC	1 cut(s)	2303
PcsI	WCGNNNNNNNCGW	3 cut(s)	648, 771, 2235
PctI	GAATGC	2 cut(s)	666, 1265
PdiI	GCCGGC	2 cut(s)	88, 109
PdmI	GAANNNNTTC	2 cut(s)	2321, 2382
PfeI	GAWTC	1 cut(s)	1106
PflMI	CCANNNNNTGG	1 cut(s)	2079
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	6 cut(s)	52, 1572, 1575, 1774, 2513, 2516
Ple19I	CGATCG	1 cut(s)	2242
PleI	GAGTC	2 cut(s)	1221, 1300
PluTI	GGCGCC	1 cut(s)	263
PpsI	GAGTC	2 cut(s)	1221, 1300
Ppu21I	YACGTR	1 cut(s)	1147
PpuMI	RGGWCCY	1 cut(s)	1000
PscI	ACATGT	3 cut(s)	586, 2277, 2301
Psp5II	RGGWCCY	1 cut(s)	1000
Psp6I	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
PspEI	GGTNACC	1 cut(s)	973
PspFI	CCCAGC	2 cut(s)	155, 179
PspGI	CCWGG	5 cut(s)	1434, 1446, 1823, 2027, 2156
PspN4I	GGNNCC	8 cut(s)	261, 755, 1539, 1664, 1713, 1928, 2084, 2233
PspPI	GGNCC	4 cut(s)	4, 754, 1000, 1711
PspPPI	RGGWCCY	1 cut(s)	1000
PsrI	GAACNNNNNNTAC	2 cut(s)	2489, 2521
PstI	CTGCAG	1 cut(s)	1578
PsuI	RGATCY	2 cut(s)	443, 1926
PvuI	CGATCG	1 cut(s)	2242
PvuII	CAGCTG	1 cut(s)	1573
RseI	CAYNNNNRTG	3 cut(s)	1394, 1737, 2198
SapI	GCTCTTC	1 cut(s)	2303
SaqAI	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
SatI	GCNGC	6 cut(s)	51, 1571, 1574, 1773, 2512, 2515
Sau96I	GGNCC	4 cut(s)	4, 754, 1000, 1711
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	2 cut(s)	1221, 1301
ScrFI	CCNGG	9 cut(s)	132, 299, 300, 561, 1436, 1448, 1825, 2029, 2158
SduI	GDGCHC	5 cut(s)	223, 241, 969, 1734, 2254
SfaNI	GCATC	6 cut(s)	404, 657, 709, 806, 1293, 2454
SfcI	CTRYAG	1 cut(s)	1574
SfoI	GGCGCC	1 cut(s)	261
SinI	GGWCC	3 cut(s)	754, 1000, 1711
SmaI	CCCGGG	1 cut(s)	300
SmiMI	CAYNNNNRTG	3 cut(s)	1394, 1737, 2198
SmlI	CTYRAG	4 cut(s)	968, 1208, 1716, 2111
SmoI	CTYRAG	4 cut(s)	968, 1208, 1716, 2111
SnaBI	TACGTA	1 cut(s)	1147
SpeI	ACTAGT	1 cut(s)	917
Sse9I	AATT	7 cut(s)	426, 678, 821, 1275, 1542, 1552, 1979
SsiI	CCGC	5 cut(s)	42, 264, 1009, 1908, 2509
SspDI	GGCGCC	1 cut(s)	259
SspMI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
StyD4I	CCNGG	9 cut(s)	130, 297, 298, 559, 1434, 1446, 1823, 2027, 2156
StyI	CCWWGG	9 cut(s)	23, 274, 322, 544, 735, 792, 1173, 1962, 2283
TaaI	ACNGT	5 cut(s)	271, 347, 553, 1084, 2461
TaiI	ACGT	2 cut(s)	457, 1149
TaqI	TCGA	6 cut(s)	504, 651, 1188, 1854, 1977, 2076
TasI	AATT	7 cut(s)	426, 678, 821, 1275, 1542, 1552, 1979
TatI	WGTACW	5 cut(s)	197, 1479, 1653, 1890, 2394
TfiI	GAWTC	1 cut(s)	1106
Tru1I	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
Tru9I	TTAA	6 cut(s)	672, 923, 1022, 1869, 1920, 2049
TscAI	CASTG	9 cut(s)	274, 556, 864, 1072, 1132, 2223, 2376, 2420, 2524
TseFI	GTSAC	3 cut(s)	973, 1293, 2214
TseI	GCWGC	6 cut(s)	50, 1570, 1573, 1772, 2511, 2514
Tsp45I	GTSAC	3 cut(s)	973, 1293, 2214
TspDTI	ATGAA	7 cut(s)	465, 690, 980, 1272, 2259, 2330, 2391
TspGWI	ACGGA	1 cut(s)	2030
TspMI	CCCGGG	1 cut(s)	298
TspRI	CASTG	9 cut(s)	274, 556, 864, 1072, 1132, 2223, 2376, 2420, 2524
Van91I	CCANNNNNTGG	1 cut(s)	2079
VneI	GTGCAC	1 cut(s)	1730
VpaK11BI	GGWCC	3 cut(s)	754, 1000, 1711
XapI	RAATTY	3 cut(s)	426, 678, 821
XceI	RCATGY	4 cut(s)	590, 2122, 2281, 2305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmaI	CCCGGG	1 cut(s)	298
XmaJI	CCTAGG	3 cut(s)	23, 274, 322
XmnI	GAANNNNTTC	2 cut(s)	2321, 2382
XspI	CTAG	7 cut(s)	24, 255, 275, 323, 624, 902, 918
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.