Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Reverse (-)

54178011 .. 54182947

Gene Structure 4937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG318700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGGCCCTTGTACCTCATAATCGGGCCCCCAACACCATTCGTAGAGGAGACAATTATCGTCCTCCTCTGCCTAGTAGAGATGGCCGTCGTCAATTTGAAACAGATGACAGTTCATTGATCAGCCAAGTTCTGTTCATCGATGAATCTCATGATGACCGTCCCTATGATCCTACTCCTATTTCTTTGAAACATATTCTACAAGCCGCAGAGATTATTATTCTTTCCCATGTCAACACCCCTGATATCCATTCCAAAGTTTCGGGATCAGCAGAAACTGCAGATGCACATGAGGATGCCTTGGAACATCATGCGAGCCCGATTACCCTCCATGAAAGCTACGGTGTTCCAAGCAGCATCTTTATTGCAATTTCCTGCAAGTTATTTACAAGAAAATGGCTGACTGGGGAAGATAACAACAAGAAAAATATAGCACTGGGTATTTTATATGCCGTCCACCAGTACGATTGGCAAGAAAAGGTGGTACTAGTCTTGGGAACTTTTGCTGTGAAAAATGGTGAGCTTTGGCTTGTGGCGCAGCTTTACACCACCTATACGCTCGCCAAAGAGATTGGAAAACTCGAGCACTTACCTGAGTTACTGGAGCGTGCAGAGACTGATTTCAAGTCAAAATTTGAAACATACAACAACCTTGTTAAAGCCGTGCTCAGAGTGACCAAGCTCATTATTCGGTTACAGGAGCTTCGCTCTGATCCTCACTCAACCACCGAGCTAGAATCTACAACCAATTCAACTGAGGTTCATATTGCCAGTGCTGTTTACTGGACAATTTGGAGTCTAGTAGTTGCTGCATCACATTTTGTAGGGATCACATGCATGGGTCCGGACTACAAAATGGAAGAATGGGAACTATCATTTTCGATCCAAAAGCTCGAAAGTATACACAGCGACCTTGAGGAGACCATCAACAGTTTATTTGATGCCATCCAGAGGAAGAAAGATGATGAAGCATTAGCTGCAATTGCATACATTTTAGAAAACCCACATGTTGACAACATGAAGCCTTTAAAGGTTTTGTTTTTCAAAGATAACCAGCCAGCACTCTATGATTGCTACAGAAAAAGAAGGGTGAGTATTGATCTGTTGAAGGGGAAGGTTGTAATACTGTTCCTTACAGACCTAAACATCCTCCATGAAAACGAGTACATGATCGTCCAACAAATGTACGTGGAAAAACGCCACAAGCCAATGAAGCCGGAGAGCCAGTACGAGGTTGTGTGGGTTCCGATTGTGGACACATGGACCGAAGACAAGTACGAACAGTTCGAGAGGATTAGAAATTGTATGGAATGGTACTCGGTTTACCTCCCTTCCGTAGTTTCGCCGACTGTGATCAGGTACATCCGAAAGGAGGATAAATGGAAATTTGTGAAGAAGCCTTTGCTTGTGGTGATGGACCCTCAAGGTAATATAGTGCACACCAATGCTGTACACATGATGTGTGTTTTTGGAAGCGTAGCATTTCCATTCAATAAAAACAGGGAGGAAGTGCTCTGGGAAGAGGAGAGCTGGAGAATTGAACTTGTGGCAGACTCCATCGATGAGAACTTAATTCCTTGGATCACCGAAAGGAAATACATTTGCTTGTACGGTGGAGAAGACATAAAATGGATCCGGAGTTTCACAAGGGCGGCAAGAAGTGTGGCTTGGGAAGCTGGAATCCGGTTGGAATTGCTTTACGTGGGCAAGAGGAAGGCTACGGAGAAAGTGGTGAAGAACATAATGAGAATCATTCAAGACGAGAATCTAAGCCACACGATCGAGTGGCAATTCATTTCGTTGTTCTGGACTCGTCTAGAAAGCATGTGGGAATCCAAAGGACATCAACTCCAGAACAAGCTTAAGAAATCAAGTCAACTTGGGACGACCGATTATGTTGCTATGAAAAACGACGATGCCGTAATGCAAGGGATTATATCAATGCTGACTTTCGGTTCCAGCGACCACGGGTGGGCGCTGATTGGGACCGGTTCGGCGGAGATGTCTAAGGCAAACGGGGAGCATATGTTGAGGAGCTTGAGGGAGTTTAATGCGTGGAAGACAAGGCACAGTGAGTTAGGGTTTACGCCTGCACTGAATGAATACCTTGCTGGGGTGTCTAAGCAGGCCCCACATCACTGCTCCAGTTTGATGTTGCCTGTCACCGGAGTCATGCCGGAGATGGTGGCCTGCGCTGAATGTGGACGTATCATGGAGAGGTTCAACATGTTCCGCTGCTGCACTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

748

Amino Acids

86.24

Weight (kDa)

6.06

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_N	PF14576	35 - 335	1.5e-47	Sieve element occlusion N-terminus
SEO_C	PF14577	500 - 747	5.3e-78	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	898
AccIII	TCCGGA	2 cut(s)	841, 1632
AciI	CCGC	4 cut(s)	204, 1649, 1994, 2230
AclWI	GGATC	8 cut(s)	161, 271, 704, 833, 874, 1586, 1624, 1637
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	629, 1382
AfiI	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
AflII	CTTAAG	1 cut(s)	1859
AflIII	ACRYGT	2 cut(s)	1003, 2223
AgeI	ACCGGT	1 cut(s)	1985
AhlI	ACTAGT	1 cut(s)	484
AjuI	GAANNNNNNNTTGG	2 cut(s)	1648, 1680
Alw21I	GWGCWC	4 cut(s)	585, 666, 1437, 1512
Alw26I	GTCTC	3 cut(s)	42, 605, 911
Alw44I	GTGCAC	1 cut(s)	1433
AlwI	GGATC	8 cut(s)	161, 271, 704, 833, 874, 1586, 1624, 1637
AlwNI	CAGNNNCTG	2 cut(s)	275, 614
Ama87I	CYCGRG	1 cut(s)	578
Aor13HI	TCCGGA	2 cut(s)	841, 1632
AoxI	GGCC	5 cut(s)	3, 24, 82, 2124, 2184
ApaI	GGGCCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	1433
ApeKI	GCWGC	6 cut(s)	351, 535, 806, 974, 2232, 2235
ApoI	RAATTY	2 cut(s)	629, 1382
AsiGI	ACCGGT	1 cut(s)	1985
AspLEI	GCGC	3 cut(s)	535, 1975, 2192
AspS9I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
AsuHPI	GGTGA	6 cut(s)	527, 1099, 1420, 1573, 1741, 2152
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	4 cut(s)	839, 1260, 1414, 1983
BaeGI	GKGCMC	2 cut(s)	28, 1437
BamHI	GGATCC	1 cut(s)	1629
BanII	GRGCYC	2 cut(s)	28, 317
BbsI	GAAGAC	3 cut(s)	1272, 1623, 2063
Bbv12I	GWGCWC	4 cut(s)	585, 666, 1437, 1512
BbvI	GCAGC	6 cut(s)	363, 547, 793, 961, 2219, 2222
BccI	CCATC	6 cut(s)	74, 929, 950, 1405, 1562, 2173
BceAI	ACGGC	4 cut(s)	69, 434, 644, 1901
BcgI	CGANNNNNNTGC	2 cut(s)	1877, 1911
BclI	TGATCA	2 cut(s)	117, 1350
BcoDI	GTCTC	3 cut(s)	42, 605, 911
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
BfmI	CTRYAG	2 cut(s)	276, 1072
BfoI	RGCGCY	1 cut(s)	1976
BfrI	CTTAAG	1 cut(s)	1859
BisI	GCNGC	8 cut(s)	204, 352, 536, 807, 975, 1650, 2233, 2236
BlsI	GCNGC	8 cut(s)	205, 353, 537, 808, 976, 1651, 2234, 2237
Bme18I	GGWCC	4 cut(s)	839, 1260, 1414, 1983
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
BmiI	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
BmrI	ACTGGG	2 cut(s)	411, 443
BmsI	GCATC	6 cut(s)	271, 283, 363, 818, 928, 1903
BmuI	ACTGGG	2 cut(s)	411, 443
BpiI	GAAGAC	3 cut(s)	1272, 1623, 2063
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	4 cut(s)	620, 1549, 1832, 2125
BpuEI	CTTGAG	3 cut(s)	932, 1404, 2056
Bsa29I	ATCGAT	2 cut(s)	138, 1557
BsaAI	YACGTR	2 cut(s)	1186, 1699
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	3 cut(s)	297, 1574, 1963
BsaWI	WCCGGW	5 cut(s)	841, 1632, 1680, 1985, 2162
BsaXI	ACNNNNNCTCC	6 cut(s)	1208, 1238, 1830, 1860, 2009, 2039
Bsc4I	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
Bse118I	RCCGGY	1 cut(s)	1985
Bse1I	ACTGG	8 cut(s)	406, 438, 457, 603, 768, 785, 1222, 2142
BseAI	TCCGGA	2 cut(s)	841, 1632
BseCI	ATCGAT	2 cut(s)	138, 1557
BseDI	CCNNGG	3 cut(s)	297, 1574, 1963
BseGI	GGATG	4 cut(s)	298, 942, 1143, 1359
BseLI	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
BseMII	CTCAG	3 cut(s)	582, 679, 744
BseNI	ACTGG	8 cut(s)	406, 438, 457, 603, 768, 785, 1222, 2142
BseRI	GAGGAG	5 cut(s)	54, 60, 929, 1535, 2044
BseSI	GKGCMC	2 cut(s)	28, 1437
BseXI	GCAGC	6 cut(s)	363, 547, 793, 961, 2219, 2222
BseYI	CCCAGC	1 cut(s)	2108
BsgI	GTGCAG	3 cut(s)	627, 2073, 2221
Bsh1285I	CGRYCG	2 cut(s)	1779, 1887
BshFI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
BshTI	ACCGGT	1 cut(s)	1985
BshVI	ATCGAT	2 cut(s)	138, 1557
BsiEI	CGRYCG	2 cut(s)	1779, 1887
BsiHKAI	GWGCWC	4 cut(s)	585, 666, 1437, 1512
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
BslFI	GGGAC	3 cut(s)	144, 1894, 1996
BslI	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
BsmAI	GTCTC	3 cut(s)	42, 605, 911
BsmFI	GGGAC	3 cut(s)	144, 1894, 1996
BsnI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
Bso31I	GGTCTC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	578
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	6 cut(s)	28, 317, 585, 666, 1437, 1512
Bsp13I	TCCGGA	2 cut(s)	841, 1632
Bsp1407I	TGTACA	1 cut(s)	1447
BspACI	CCGC	4 cut(s)	204, 1649, 1994, 2230
BspANI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
BspCNI	CTCAG	3 cut(s)	583, 678, 745
BspDI	ATCGAT	2 cut(s)	138, 1557
BspEI	TCCGGA	2 cut(s)	841, 1632
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	8 cut(s)	161, 271, 704, 833, 874, 1586, 1624, 1637
BspTI	CTTAAG	1 cut(s)	1859
BspTNI	GGTCTC	1 cut(s)	911
BsrFI	RCCGGY	1 cut(s)	1985
BsrGI	TGTACA	1 cut(s)	1447
BsrI	ACTGG	8 cut(s)	406, 438, 457, 603, 768, 785, 1222, 2142
BssAI	RCCGGY	1 cut(s)	1985
BssECI	CCNNGG	3 cut(s)	297, 1574, 1963
BssNAI	GTATAC	1 cut(s)	899
BssT1I	CCWWGG	2 cut(s)	297, 1574
Bst1107I	GTATAC	1 cut(s)	899
Bst4CI	ACNGT	9 cut(s)	110, 158, 341, 929, 1125, 1281, 1348, 1610, 2069
Bst6I	CTCTTC	1 cut(s)	1512
BstAFI	CTTAAG	1 cut(s)	1859
BstAPI	GCANNNNNTGC	2 cut(s)	275, 974
BstAUI	TGTACA	1 cut(s)	1447
BstBAI	YACGTR	2 cut(s)	1186, 1699
BstC8I	GCNNGC	7 cut(s)	313, 558, 606, 1056, 2088, 2124, 2188
BstDEI	CTNAG	6 cut(s)	591, 665, 753, 1766, 2004, 2118
BstDSI	CCRYGG	1 cut(s)	1963
BstF5I	GGATG	4 cut(s)	298, 942, 1143, 1359
BstH2I	RGCGCY	1 cut(s)	1976
BstHHI	GCGC	3 cut(s)	535, 1975, 2192
BstMAI	GTCTC	3 cut(s)	42, 605, 911
BstMCI	CGRYCG	2 cut(s)	1779, 1887
BstMWI	GCNNNNNNNGC	6 cut(s)	275, 532, 974, 980, 1210, 1670
BstNSI	RCATGY	4 cut(s)	834, 1007, 1825, 2227
BstSFI	CTRYAG	2 cut(s)	276, 1072
BstSLI	GKGCMC	2 cut(s)	28, 1437
BstV1I	GCAGC	6 cut(s)	363, 547, 793, 961, 2219, 2222
BstV2I	GAAGAC	3 cut(s)	1272, 1623, 2063
BstX2I	RGATCY	1 cut(s)	1629
BstYI	RGATCY	1 cut(s)	1629
BstZ17I	GTATAC	1 cut(s)	899
Bsu15I	ATCGAT	2 cut(s)	138, 1557
BsuRI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
BsuTUI	ATCGAT	2 cut(s)	138, 1557
BtgI	CCRYGG	1 cut(s)	1963
BtsCI	GGATG	4 cut(s)	298, 942, 1143, 1359
BtsI	GCAGTG	1 cut(s)	2134
BtsIMutI	CAGTG	6 cut(s)	431, 775, 2074, 2090, 2134, 2238
Cac8I	GCNNGC	7 cut(s)	313, 558, 606, 1056, 2088, 2124, 2188
CaiI	CAGNNNCTG	2 cut(s)	275, 614
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	3 cut(s)	535, 1975, 2192
Cfr10I	RCCGGY	1 cut(s)	1985
Cfr13I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
ClaI	ATCGAT	2 cut(s)	138, 1557
CspAI	ACCGGT	1 cut(s)	1985
CspCI	CAANNNNNGTGG	2 cut(s)	1641, 1676
DdeI	CTNAG	6 cut(s)	591, 665, 753, 1766, 2004, 2118
DraI	TTTAAA	1 cut(s)	1026
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	1512
EarI	CTCTTC	1 cut(s)	1512
EciI	GGCGGA	1 cut(s)	2009
Eco130I	CCWWGG	2 cut(s)	297, 1574
Eco24I	GRGCYC	2 cut(s)	28, 317
Eco31I	GGTCTC	1 cut(s)	911
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	4 cut(s)	839, 1260, 1414, 1983
Eco88I	CYCGRG	1 cut(s)	578
EcoO109I	RGGNCCY	2 cut(s)	25, 2125
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	297, 1574
EcoT22I	ATGCAT	1 cut(s)	836
EcoT38I	GRGCYC	2 cut(s)	28, 317
ErhI	CCWWGG	2 cut(s)	297, 1574
FalI	AAGNNNNNCTT	2 cut(s)	1648, 1680
FaqI	GGGAC	3 cut(s)	144, 1894, 1996
FauNDI	CATATG	1 cut(s)	2022
FbaI	TGATCA	2 cut(s)	117, 1350
FblI	GTMKAC	1 cut(s)	898
Fnu4HI	GCNGC	8 cut(s)	204, 352, 536, 807, 975, 1650, 2233, 2236
FokI	GGATG	4 cut(s)	305, 929, 1130, 1346
FriOI	GRGCYC	2 cut(s)	28, 317
Fsp4HI	GCNGC	8 cut(s)	204, 352, 536, 807, 975, 1650, 2233, 2236
FspBI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
GlaI	GCGC	3 cut(s)	534, 1974, 2191
GluI	GCNGC	8 cut(s)	204, 352, 536, 807, 975, 1650, 2233, 2236
GsaI	CCCAGC	1 cut(s)	2112
GsuI	CTGGAG	4 cut(s)	620, 1549, 1832, 2125
HaeII	RGCGCY	1 cut(s)	1976
HaeIII	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
HapII	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
HhaI	GCGC	3 cut(s)	535, 1975, 2192
Hin6I	GCGC	3 cut(s)	533, 1973, 2190
HinP1I	GCGC	3 cut(s)	533, 1973, 2190
HincII	GTYRAC	3 cut(s)	232, 1009, 1874
HindII	GTYRAC	3 cut(s)	232, 1009, 1874
HindIII	AAGCTT	1 cut(s)	1856
HpaII	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
HphI	GGTGA	6 cut(s)	527, 1099, 1420, 1573, 1741, 2152
Hpy188I	TCNGA	4 cut(s)	668, 709, 1245, 1364
Hpy99I	CGWCG	2 cut(s)	90, 1913
HpyAV	CCTTC	5 cut(s)	1077, 1099, 1105, 1338, 1705
HpyCH4III	ACNGT	9 cut(s)	110, 158, 341, 929, 1125, 1281, 1348, 1610, 2069
HpyCH4IV	ACGT	3 cut(s)	1185, 1698, 2203
HpyF10VI	GCNNNNNNNGC	6 cut(s)	275, 532, 974, 980, 1210, 1670
HpyF3I	CTNAG	6 cut(s)	591, 665, 753, 1766, 2004, 2118
HpySE526I	ACGT	3 cut(s)	1185, 1698, 2203
HspAI	GCGC	3 cut(s)	533, 1973, 2190
Kpn2I	TCCGGA	2 cut(s)	841, 1632
Ksp22I	TGATCA	2 cut(s)	117, 1350
LmnI	GCTCC	5 cut(s)	601, 697, 2017, 2031, 2144
Lsp1109I	GCAGC	6 cut(s)	363, 547, 793, 961, 2219, 2222
LweI	GCATC	6 cut(s)	271, 283, 363, 818, 928, 1903
MaeI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
MaeII	ACGT	3 cut(s)	1185, 1698, 2203
MaeIII	GTNAC	4 cut(s)	594, 670, 690, 2158
MboII	GAAGA	9 cut(s)	419, 869, 964, 1277, 1402, 1529, 1628, 1744, 2068
MfeI	CAATTG	1 cut(s)	978
MflI	RGATCY	1 cut(s)	1629
MhlI	GDGCHC	6 cut(s)	28, 317, 585, 666, 1437, 1512
MlyI	GAGTC	4 cut(s)	802, 1544, 1801, 2175
MmeI	TCCRAC	2 cut(s)	1198, 1665
Mph1103I	ATGCAT	1 cut(s)	836
MroI	TCCGGA	2 cut(s)	841, 1632
MseI	TTAA	5 cut(s)	654, 1025, 1568, 1860, 2046
MslI	CAYNNNNRTG	3 cut(s)	291, 833, 1440
MspA1I	CMGCKG	1 cut(s)	2232
MspCI	CTTAAG	1 cut(s)	1859
MspI	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
MunI	CAATTG	1 cut(s)	978
MwoI	GCNNNNNNNGC	6 cut(s)	275, 532, 974, 980, 1210, 1670
NdeI	CATATG	1 cut(s)	2022
NlaIV	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
NmuCI	GTSAC	2 cut(s)	670, 2158
NsiI	ATGCAT	1 cut(s)	836
NspI	RCATGY	4 cut(s)	834, 1007, 1825, 2227
PaeR7I	CTCGAG	1 cut(s)	578
PagI	TCATGA	1 cut(s)	148
PciI	ACATGT	2 cut(s)	1003, 2223
PcsI	WCGNNNNNNNCGW	3 cut(s)	1281, 1914, 1956
PfeI	GAWTC	6 cut(s)	143, 734, 1677, 1746, 1762, 1829
PinAI	ACCGGT	1 cut(s)	1985
PkrI	GCNGC	8 cut(s)	205, 353, 537, 808, 976, 1651, 2234, 2237
Ple19I	CGATCG	1 cut(s)	1779
PleI	GAGTC	4 cut(s)	801, 1544, 1801, 2174
PpsI	GAGTC	4 cut(s)	801, 1544, 1801, 2174
Ppu21I	YACGTR	2 cut(s)	1186, 1699
PscI	ACATGT	2 cut(s)	1003, 2223
PspFI	CCCAGC	1 cut(s)	2108
PspN4I	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
PspXI	VCTCGAGB	1 cut(s)	578
PsrI	GAACNNNNNNTAC	2 cut(s)	1265, 1297
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	275, 614
PsuI	RGATCY	1 cut(s)	1629
PvuI	CGATCG	1 cut(s)	1779
RseI	CAYNNNNRTG	3 cut(s)	291, 833, 1440
SaqAI	TTAA	5 cut(s)	654, 1025, 1568, 1860, 2046
SatI	GCNGC	8 cut(s)	204, 352, 536, 807, 975, 1650, 2233, 2236
Sau96I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
SchI	GAGTC	4 cut(s)	802, 1544, 1801, 2175
SduI	GDGCHC	6 cut(s)	28, 317, 585, 666, 1437, 1512
SfaNI	GCATC	6 cut(s)	271, 283, 363, 818, 928, 1903
SfcI	CTRYAG	2 cut(s)	276, 1072
Sfr274I	CTCGAG	1 cut(s)	578
SinI	GGWCC	4 cut(s)	839, 1260, 1414, 1983
SlaI	CTCGAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	3 cut(s)	291, 833, 1440
SmlI	CTYRAG	5 cut(s)	578, 911, 1419, 1859, 2035
SmoI	CTYRAG	5 cut(s)	578, 911, 1419, 1859, 2035
SpeI	ACTAGT	1 cut(s)	484
SsiI	CCGC	4 cut(s)	204, 1649, 1994, 2230
SspMI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
StyI	CCWWGG	2 cut(s)	297, 1574
TaaI	ACNGT	9 cut(s)	110, 158, 341, 929, 1125, 1281, 1348, 1610, 2069
TaiI	ACGT	3 cut(s)	1188, 1701, 2206
TaqI	TCGA	7 cut(s)	138, 579, 878, 891, 1284, 1557, 1779
TaqII	GACCGA	2 cut(s)	1277, 1901
TatI	WGTACW	2 cut(s)	1161, 1447
TauI	GCSGC	2 cut(s)	206, 1652
TfiI	GAWTC	6 cut(s)	143, 734, 1677, 1746, 1762, 1829
Tru1I	TTAA	5 cut(s)	654, 1025, 1568, 1860, 2046
Tru9I	TTAA	5 cut(s)	654, 1025, 1568, 1860, 2046
TscAI	CASTG	6 cut(s)	438, 775, 2074, 2097, 2141, 2245
TseFI	GTSAC	2 cut(s)	670, 2158
TseI	GCWGC	6 cut(s)	351, 535, 806, 974, 2232, 2235
Tsp45I	GTSAC	2 cut(s)	670, 2158
TspGWI	ACGGA	2 cut(s)	1321, 1733
TspRI	CASTG	6 cut(s)	438, 775, 2074, 2097, 2141, 2245
Vha464I	CTTAAG	1 cut(s)	1859
VneI	GTGCAC	1 cut(s)	1433
VpaK11BI	GGWCC	4 cut(s)	839, 1260, 1414, 1983
XapI	RAATTY	2 cut(s)	629, 1382
XbaI	TCTAGA	1 cut(s)	1813
XceI	RCATGY	4 cut(s)	834, 1007, 1825, 2227
XhoI	CTCGAG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	898
XspI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
Zsp2I	ATGCAT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.