Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002043

Physical Location & Seq

Genomic Coordinates Reverse (-)

53870831 .. 53874974

Gene Structure 4144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGGCCCTTGTACCTCATAATCGGGCCCCCAACACCATTCGTAGAGGAGACAATTATCGTCCTCCTCTACCTAGTAGAGATGGCCGTCGTCAATTTGAAACAGATGACAGTTCATTGATCAGCCAAGTTCTGTTCATCGATGAATCTCATGATGACCGTCCCTATGATCCTACTCCTATTTCTTTGAAACATATTCTACAAGCCGCAGAGATTATTATTCTTTCCCATGTCAACACCCCTGATATCCATTCCAATGTTTCGGGATCAGCAGAAACTGCAGATGCACATGAGGATGCCTTGGAACATCATGCGAGCCCGATTACCCTCCATGAAAGCTACGGTGTTCCAAGCAGCATCTTTATTGCAATTTCCTGCAAGTTATTTAAAAGAAAATGGCTGACTGGGGAAGATGACAACAAGAAAAATATAGCACTGGGTATTTTATATGCCGTCCACCAGTACGATTGGCAAGAAAAGGTGGTACTAGTCTTGGGAACTTTTGCTGTGAAAAATGGTGAGCTTTGGCTTGTGGCTCAGCTTTACACCACCTATACGCTCGCCAAAGAGATTGGAAAACTCGAGCACTTACCTGAGTTATTGGAGCGTGCAGAGACTGATTTGAAGTCAAAATTTGAAACATACAACAACCTTGTTAAAGCCGTGCTCAGAGTGACCAAGCTCATTATTCGGTTACAGGAGCTTCGCTGTGATCCTCACTCAACCACCGAGCTAGAATCTACAACCAATTCAACTGAGGTTCATATTGCCAGTGCTGTTTACTGGACAATTTGGAGTCTAGTAGTTGCTGCATCACATTTTGTAGGGATCACATGCATGGGTCCGGACTACAAAATGGAAGAATGGGAACTATCATTTTCGATCCAAAAGCTCGAAAGCATACACAGCGACCTTGAGGAGACCATCAACAGTTTATTTGATGCCATCCAGAGGAAGAAAGATGATGAAGCTTTAGCTGCAATTGCATACATTTTAGAAAACCCACATGTTGACAACATGAAGCCTTTAAAGGTTTTGTTTTTCAAAGATAACCAGCCAGCACTCTATGATTGCTACAGAAAAAGAAGGGTGAGTATTGGTCTGTTGAAGGGGAAGGTTGTAATACTGTTCCTTACAGACCTAAACATCCTCCATGAAAACGAGTACATGATCGTCCAACAAATGTACGTGGAAAAACGCCACAAGCCAATGAAGCCGGAGAGCCAGTACGAGGTTGTGTGGGTTCCGATTGTGGACACATGGACCGAAGACAAGTACGAACAGTTCGAGAGAATTAGAAATTGTATGGAATGGTACTCGGTTTATCTCCCTTCCGTAGTTTCGCCGACTGTGATCAGGTACATCCGAAAGGAGGATAAATGGAACTTTGTGAAGAAGCCTTTGCTTGCGGTGATGGACCCTCAAGGTAAAATAGTGCACACCAATGCTGTACACATGATGTGTGTTTTTGGAAGCATAGCATTTCCATTCAATAAAAACAGGGAGGAAGTGCTCTGGGAAGAGGAGACCTGGAGAATTGAACTTGTGGCAGACTCCATCGATGAGAACTTAATTTCTTGGATCACCGAAGGGAAATACATTTGCTTGTACGGTGGAGAAGACATAAAATGGATCCGGAATTTCACAAGGGCGGCAAGAAGTGTGGCTTGGGAAGCTGGAATCCGGTTGGAATTGCTTTACGTGGGCAAGAGGAAGGCTACGGAGAAAGTGGTGAAGAACATAATGAGAATCATTCAAGACGAGAATCTAAGCCACACGATCGAGTGGCAATTCATTTCGTTGTTCTGGACTCGTCTAGAAAGCATGTGGGAATCCAAAGGACATCAACTCCAGAACAAGCTTAAGAAATCAAGTCAACTTGGGACGACCGATTATGTTGCTATGAAAAACGACGATGCCGTAATGCAAGGGATTATATCAATGCTGACTTTCGGTTCCAGCGACCACGGGTGGGCGCTGATTGGGACCGGTTCGGCGGAGATGTCTAAGGCAAACGGGGAGCATATGTTGAGGAGCTTGAGGGAGTTTAATGCGTGGAAGACAAGGCACAGTGAGTTAGGGTTTACGCCTGCACTGAATGAATACCTTGCTGGGGTGTCTAAGCAGGCCCCACATCACTGCTCCAGTTTGATGTTGCCTGTCACCGGAGTCATGCCGGAGACGGTGGCCTGCGCTGAATGTGGACGTATCATGGAGAGGTTCAACATGTTCCGCTGCTGCACTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

748

Amino Acids

86.06

Weight (kDa)

6.01

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_N	PF14576	35 - 335	1.5e-47	Sieve element occlusion N-terminus
SEO_C	PF14577	500 - 747	6.7e-80	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002043)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25290 FvH4_4g25290 FvH4_4g25290 FvH4_4g25310 FvH4_4g25320
malus_domestica	MD13G1105000.v1.1 MD13G1105100.v1.1 MD16G1104800.v1.1 MD16G1105000.v1.1
prunus_persica	Prupe.1G241400_v2.0.a1 Prupe.1G241500_v2.0.a1
pyrus_communis	pycom13g09110 pycom13g09120 pycom16g08950 pycom16g08960
rosa_chinensis	RchiOBHm_Chr4g0432561 RchiOBHm_Chr4g0432571 RchiOBHm_Chr4g0432611
rosa_laevigata	RLG00000006831 RLG00000006832 RLG00000006833
rosa_multiflora	Rmu_sc0003886.1_g000001 Rmu_sc0004612.1_g000014 Rmu_sc0027699.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373990 Rroxscaffold_5G00374000 Rroxscaffold_5G00374030
rosa_rugosa	Rorug04G0260100 Rorug04G0260100 Rorug04G0260200
rosa_samantha	Rh4AG315100 Rh4AG315200 Rh4AG315300 Rh4BG322800 Rh4BG322900 Rh4BG323000 Rh4CG337900 Rh4CG338000 Rh4CG338100 Rh4DG318600 Rh4DG318700 Rh4DG318800
rosa_wichuraiana	Rw4G027380 Rw4G027390 Rw4G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	841, 1632
AciI	CCGC	5 cut(s)	204, 1406, 1649, 1994, 2230
AclWI	GGATC	8 cut(s)	161, 271, 704, 833, 874, 1586, 1624, 1637
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	629, 1636
AfiI	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
AflII	CTTAAG	1 cut(s)	1859
AflIII	ACRYGT	2 cut(s)	1003, 2223
AgeI	ACCGGT	1 cut(s)	1985
AhlI	ACTAGT	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	1526
AjuI	GAANNNNNNNTTGG	2 cut(s)	1648, 1680
Alw21I	GWGCWC	4 cut(s)	585, 666, 1437, 1512
Alw26I	GTCTC	5 cut(s)	42, 605, 911, 1517, 2171
Alw44I	GTGCAC	1 cut(s)	1433
AlwI	GGATC	8 cut(s)	161, 271, 704, 833, 874, 1586, 1624, 1637
AlwNI	CAGNNNCTG	2 cut(s)	275, 614
Ama87I	CYCGRG	1 cut(s)	578
Aor13HI	TCCGGA	2 cut(s)	841, 1632
AoxI	GGCC	5 cut(s)	3, 24, 82, 2124, 2184
ApaI	GGGCCC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	1433
ApeKI	GCWGC	5 cut(s)	351, 806, 974, 2232, 2235
ApoI	RAATTY	2 cut(s)	629, 1636
AsiGI	ACCGGT	1 cut(s)	1985
AspLEI	GCGC	2 cut(s)	1975, 2192
AspS9I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
AsuHPI	GGTGA	6 cut(s)	527, 1099, 1420, 1573, 1741, 2152
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	4 cut(s)	839, 1260, 1414, 1983
BaeGI	GKGCMC	2 cut(s)	28, 1437
BamHI	GGATCC	1 cut(s)	1629
BanII	GRGCYC	2 cut(s)	28, 317
BbsI	GAAGAC	3 cut(s)	1272, 1623, 2063
Bbv12I	GWGCWC	4 cut(s)	585, 666, 1437, 1512
BbvI	GCAGC	5 cut(s)	363, 793, 961, 2219, 2222
BccI	CCATC	5 cut(s)	74, 929, 950, 1405, 1562
BceAI	ACGGC	4 cut(s)	69, 434, 644, 1901
BcgI	CGANNNNNNTGC	2 cut(s)	1877, 1911
BciT130I	CCWGG	1 cut(s)	1528
BclI	TGATCA	2 cut(s)	117, 1350
BcoDI	GTCTC	5 cut(s)	42, 605, 911, 1517, 2171
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
BfmI	CTRYAG	2 cut(s)	276, 1072
BfoI	RGCGCY	1 cut(s)	1976
BfrI	CTTAAG	1 cut(s)	1859
BisI	GCNGC	7 cut(s)	204, 352, 807, 975, 1650, 2233, 2236
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	7 cut(s)	205, 353, 808, 976, 1651, 2234, 2237
Bme1390I	CCNGG	1 cut(s)	1528
Bme18I	GGWCC	4 cut(s)	839, 1260, 1414, 1983
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
BmiI	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
BmrFI	CCNGG	1 cut(s)	1528
BmrI	ACTGGG	2 cut(s)	411, 443
BmsI	GCATC	6 cut(s)	271, 283, 363, 818, 928, 1903
BmuI	ACTGGG	2 cut(s)	411, 443
BpiI	GAAGAC	3 cut(s)	1272, 1623, 2063
BpmI	CTGGAG	3 cut(s)	1549, 1832, 2125
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	3 cut(s)	932, 1404, 2056
Bsa29I	ATCGAT	2 cut(s)	138, 1557
BsaAI	YACGTR	2 cut(s)	1186, 1699
BsaI	GGTCTC	2 cut(s)	911, 1517
BsaJI	CCNNGG	2 cut(s)	297, 1963
BsaWI	WCCGGW	5 cut(s)	841, 1632, 1680, 1985, 2162
BsaXI	ACNNNNNCTCC	6 cut(s)	1208, 1238, 1830, 1860, 2009, 2039
Bsc4I	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
Bse118I	RCCGGY	1 cut(s)	1985
Bse1I	ACTGG	7 cut(s)	406, 438, 457, 768, 785, 1222, 2142
BseAI	TCCGGA	2 cut(s)	841, 1632
BseBI	CCWGG	1 cut(s)	1528
BseCI	ATCGAT	2 cut(s)	138, 1557
BseDI	CCNNGG	2 cut(s)	297, 1963
BseGI	GGATG	4 cut(s)	298, 942, 1143, 1359
BseLI	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
BseMII	CTCAG	4 cut(s)	548, 582, 679, 744
BseNI	ACTGG	7 cut(s)	406, 438, 457, 768, 785, 1222, 2142
BseRI	GAGGAG	5 cut(s)	54, 60, 929, 1535, 2044
BseSI	GKGCMC	2 cut(s)	28, 1437
BseXI	GCAGC	5 cut(s)	363, 793, 961, 2219, 2222
BseYI	CCCAGC	1 cut(s)	2108
BsgI	GTGCAG	3 cut(s)	627, 2073, 2221
Bsh1285I	CGRYCG	2 cut(s)	1779, 1887
BshFI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
BshTI	ACCGGT	1 cut(s)	1985
BshVI	ATCGAT	2 cut(s)	138, 1557
BsiEI	CGRYCG	2 cut(s)	1779, 1887
BsiHKAI	GWGCWC	4 cut(s)	585, 666, 1437, 1512
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
BslFI	GGGAC	3 cut(s)	144, 1894, 1996
BslI	CCNNNNNNNGG	6 cut(s)	948, 1228, 1369, 1969, 2110, 2162
BsmAI	GTCTC	5 cut(s)	42, 605, 911, 1517, 2171
BsmBI	CGTCTC	1 cut(s)	2171
BsmFI	GGGAC	3 cut(s)	144, 1894, 1996
BsnI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
Bso31I	GGTCTC	2 cut(s)	911, 1517
BsoBI	CYCGRG	1 cut(s)	578
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	6 cut(s)	28, 317, 585, 666, 1437, 1512
Bsp13I	TCCGGA	2 cut(s)	841, 1632
Bsp1407I	TGTACA	1 cut(s)	1447
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	5 cut(s)	204, 1406, 1649, 1994, 2230
BspANI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
BspCNI	CTCAG	4 cut(s)	547, 583, 678, 745
BspDI	ATCGAT	2 cut(s)	138, 1557
BspEI	TCCGGA	2 cut(s)	841, 1632
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	8 cut(s)	161, 271, 704, 833, 874, 1586, 1624, 1637
BspTI	CTTAAG	1 cut(s)	1859
BspTNI	GGTCTC	2 cut(s)	911, 1517
BsrFI	RCCGGY	1 cut(s)	1985
BsrGI	TGTACA	1 cut(s)	1447
BsrI	ACTGG	7 cut(s)	406, 438, 457, 768, 785, 1222, 2142
BssAI	RCCGGY	1 cut(s)	1985
BssECI	CCNNGG	2 cut(s)	297, 1963
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	1528
Bst6I	CTCTTC	1 cut(s)	1512
BstAFI	CTTAAG	1 cut(s)	1859
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	1447
BstBAI	YACGTR	2 cut(s)	1186, 1699
BstC8I	GCNNGC	8 cut(s)	313, 558, 606, 1056, 1404, 2088, 2124, 2188
BstDEI	CTNAG	7 cut(s)	534, 591, 665, 753, 1766, 2004, 2118
BstDSI	CCRYGG	1 cut(s)	1963
BstF5I	GGATG	4 cut(s)	298, 942, 1143, 1359
BstH2I	RGCGCY	1 cut(s)	1976
BstHHI	GCGC	2 cut(s)	1975, 2192
BstMAI	GTCTC	5 cut(s)	42, 605, 911, 1517, 2171
BstMCI	CGRYCG	2 cut(s)	1779, 1887
BstMWI	GCNNNNNNNGC	6 cut(s)	275, 903, 974, 980, 1210, 1670
BstNI	CCWGG	1 cut(s)	1528
BstNSI	RCATGY	4 cut(s)	834, 1007, 1825, 2227
BstSCI	CCNGG	1 cut(s)	1526
BstSFI	CTRYAG	2 cut(s)	276, 1072
BstSLI	GKGCMC	2 cut(s)	28, 1437
BstV1I	GCAGC	5 cut(s)	363, 793, 961, 2219, 2222
BstV2I	GAAGAC	3 cut(s)	1272, 1623, 2063
BstX2I	RGATCY	1 cut(s)	1629
BstYI	RGATCY	1 cut(s)	1629
Bsu15I	ATCGAT	2 cut(s)	138, 1557
BsuRI	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
BsuTUI	ATCGAT	2 cut(s)	138, 1557
BtgI	CCRYGG	1 cut(s)	1963
BtsCI	GGATG	4 cut(s)	298, 942, 1143, 1359
BtsI	GCAGTG	1 cut(s)	2134
BtsIMutI	CAGTG	6 cut(s)	431, 775, 2074, 2090, 2134, 2238
Cac8I	GCNNGC	8 cut(s)	313, 558, 606, 1056, 1404, 2088, 2124, 2188
CaiI	CAGNNNCTG	2 cut(s)	275, 614
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	2 cut(s)	1975, 2192
Cfr10I	RCCGGY	1 cut(s)	1985
Cfr13I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
ClaI	ATCGAT	2 cut(s)	138, 1557
CspAI	ACCGGT	1 cut(s)	1985
CspCI	CAANNNNNGTGG	2 cut(s)	1641, 1676
DdeI	CTNAG	7 cut(s)	534, 591, 665, 753, 1766, 2004, 2118
DraI	TTTAAA	2 cut(s)	385, 1026
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	1512
EarI	CTCTTC	1 cut(s)	1512
EciI	GGCGGA	1 cut(s)	2009
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	28, 317
Eco31I	GGTCTC	2 cut(s)	911, 1517
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	4 cut(s)	839, 1260, 1414, 1983
Eco88I	CYCGRG	1 cut(s)	578
EcoO109I	RGGNCCY	2 cut(s)	25, 2125
EcoRII	CCWGG	1 cut(s)	1526
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	836
EcoT38I	GRGCYC	2 cut(s)	28, 317
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	2171
FalI	AAGNNNNNCTT	2 cut(s)	1648, 1680
FaqI	GGGAC	3 cut(s)	144, 1894, 1996
FauNDI	CATATG	1 cut(s)	2022
FbaI	TGATCA	2 cut(s)	117, 1350
Fnu4HI	GCNGC	7 cut(s)	204, 352, 807, 975, 1650, 2233, 2236
FokI	GGATG	4 cut(s)	305, 929, 1130, 1346
FriOI	GRGCYC	2 cut(s)	28, 317
Fsp4HI	GCNGC	7 cut(s)	204, 352, 807, 975, 1650, 2233, 2236
FspBI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
GlaI	GCGC	2 cut(s)	1974, 2191
GluI	GCNGC	7 cut(s)	204, 352, 807, 975, 1650, 2233, 2236
GsaI	CCCAGC	1 cut(s)	2112
GsuI	CTGGAG	3 cut(s)	1549, 1832, 2125
HaeII	RGCGCY	1 cut(s)	1976
HaeIII	GGCC	5 cut(s)	5, 26, 84, 2126, 2186
HapII	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
HhaI	GCGC	2 cut(s)	1975, 2192
Hin6I	GCGC	2 cut(s)	1973, 2190
HinP1I	GCGC	2 cut(s)	1973, 2190
HincII	GTYRAC	3 cut(s)	232, 1009, 1874
HindII	GTYRAC	3 cut(s)	232, 1009, 1874
HindIII	AAGCTT	2 cut(s)	966, 1856
HpaII	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
HphI	GGTGA	6 cut(s)	527, 1099, 1420, 1573, 1741, 2152
Hpy188I	TCNGA	3 cut(s)	668, 1245, 1364
Hpy99I	CGWCG	2 cut(s)	90, 1913
HpyAV	CCTTC	6 cut(s)	1077, 1099, 1105, 1338, 1580, 1705
HpyCH4IV	ACGT	3 cut(s)	1185, 1698, 2203
HpyF10VI	GCNNNNNNNGC	6 cut(s)	275, 903, 974, 980, 1210, 1670
HpyF3I	CTNAG	7 cut(s)	534, 591, 665, 753, 1766, 2004, 2118
HpySE526I	ACGT	3 cut(s)	1185, 1698, 2203
HspAI	GCGC	2 cut(s)	1973, 2190
Kpn2I	TCCGGA	2 cut(s)	841, 1632
Ksp22I	TGATCA	2 cut(s)	117, 1350
LmnI	GCTCC	5 cut(s)	601, 697, 2017, 2031, 2144
Lsp1109I	GCAGC	5 cut(s)	363, 793, 961, 2219, 2222
LweI	GCATC	6 cut(s)	271, 283, 363, 818, 928, 1903
MaeI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
MaeII	ACGT	3 cut(s)	1185, 1698, 2203
MaeIII	GTNAC	3 cut(s)	670, 690, 2158
MboII	GAAGA	9 cut(s)	419, 869, 964, 1277, 1402, 1529, 1628, 1744, 2068
MfeI	CAATTG	1 cut(s)	978
MflI	RGATCY	1 cut(s)	1629
MhlI	GDGCHC	6 cut(s)	28, 317, 585, 666, 1437, 1512
MlyI	GAGTC	4 cut(s)	802, 1544, 1801, 2175
MmeI	TCCRAC	2 cut(s)	1198, 1665
Mph1103I	ATGCAT	1 cut(s)	836
MroI	TCCGGA	2 cut(s)	841, 1632
MseI	TTAA	6 cut(s)	384, 654, 1025, 1568, 1860, 2046
MslI	CAYNNNNRTG	4 cut(s)	252, 291, 833, 1440
MspA1I	CMGCKG	1 cut(s)	2232
MspCI	CTTAAG	1 cut(s)	1859
MspI	CCGG	7 cut(s)	842, 1214, 1633, 1681, 1986, 2163, 2174
MspR9I	CCNGG	1 cut(s)	1528
MunI	CAATTG	1 cut(s)	978
MvaI	CCWGG	1 cut(s)	1528
MwoI	GCNNNNNNNGC	6 cut(s)	275, 903, 974, 980, 1210, 1670
NdeI	CATATG	1 cut(s)	2022
NlaIV	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
NmuCI	GTSAC	2 cut(s)	670, 2158
NsiI	ATGCAT	1 cut(s)	836
NspI	RCATGY	4 cut(s)	834, 1007, 1825, 2227
PaeR7I	CTCGAG	1 cut(s)	578
PagI	TCATGA	1 cut(s)	148
PciI	ACATGT	2 cut(s)	1003, 2223
PcsI	WCGNNNNNNNCGW	3 cut(s)	1281, 1914, 1956
PfeI	GAWTC	6 cut(s)	143, 734, 1677, 1746, 1762, 1829
PinAI	ACCGGT	1 cut(s)	1985
PkrI	GCNGC	7 cut(s)	205, 353, 808, 976, 1651, 2234, 2237
Ple19I	CGATCG	1 cut(s)	1779
PleI	GAGTC	4 cut(s)	801, 1544, 1801, 2174
PpsI	GAGTC	4 cut(s)	801, 1544, 1801, 2174
Ppu21I	YACGTR	2 cut(s)	1186, 1699
PscI	ACATGT	2 cut(s)	1003, 2223
Psp6I	CCWGG	1 cut(s)	1526
PspFI	CCCAGC	1 cut(s)	2108
PspGI	CCWGG	1 cut(s)	1526
PspN4I	GGNNCC	9 cut(s)	26, 27, 840, 1242, 1416, 1631, 1954, 1984, 2127
PspOMI	GGGCCC	1 cut(s)	24
PspPI	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
PspXI	VCTCGAGB	1 cut(s)	578
PsrI	GAACNNNNNNTAC	2 cut(s)	1265, 1297
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	275, 614
PsuI	RGATCY	1 cut(s)	1629
PvuI	CGATCG	1 cut(s)	1779
RseI	CAYNNNNRTG	4 cut(s)	252, 291, 833, 1440
SaqAI	TTAA	6 cut(s)	384, 654, 1025, 1568, 1860, 2046
SatI	GCNGC	7 cut(s)	204, 352, 807, 975, 1650, 2233, 2236
Sau96I	GGNCC	8 cut(s)	4, 24, 25, 839, 1260, 1414, 1983, 2125
SchI	GAGTC	4 cut(s)	802, 1544, 1801, 2175
ScrFI	CCNGG	1 cut(s)	1528
SduI	GDGCHC	6 cut(s)	28, 317, 585, 666, 1437, 1512
SfaNI	GCATC	6 cut(s)	271, 283, 363, 818, 928, 1903
SfcI	CTRYAG	2 cut(s)	276, 1072
Sfr274I	CTCGAG	1 cut(s)	578
SinI	GGWCC	4 cut(s)	839, 1260, 1414, 1983
SlaI	CTCGAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	4 cut(s)	252, 291, 833, 1440
SmlI	CTYRAG	5 cut(s)	578, 911, 1419, 1859, 2035
SmoI	CTYRAG	5 cut(s)	578, 911, 1419, 1859, 2035
SpeI	ACTAGT	1 cut(s)	484
SsiI	CCGC	5 cut(s)	204, 1406, 1649, 1994, 2230
SspMI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
StyD4I	CCNGG	1 cut(s)	1526
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	3 cut(s)	1188, 1701, 2206
TaqI	TCGA	7 cut(s)	138, 579, 878, 891, 1284, 1557, 1779
TaqII	GACCGA	2 cut(s)	1277, 1901
TatI	WGTACW	2 cut(s)	1161, 1447
TauI	GCSGC	2 cut(s)	206, 1652
TfiI	GAWTC	6 cut(s)	143, 734, 1677, 1746, 1762, 1829
Tru1I	TTAA	6 cut(s)	384, 654, 1025, 1568, 1860, 2046
Tru9I	TTAA	6 cut(s)	384, 654, 1025, 1568, 1860, 2046
TscAI	CASTG	6 cut(s)	438, 775, 2074, 2097, 2141, 2245
TseFI	GTSAC	2 cut(s)	670, 2158
TseI	GCWGC	5 cut(s)	351, 806, 974, 2232, 2235
Tsp45I	GTSAC	2 cut(s)	670, 2158
TspGWI	ACGGA	2 cut(s)	1321, 1733
TspRI	CASTG	6 cut(s)	438, 775, 2074, 2097, 2141, 2245
Vha464I	CTTAAG	1 cut(s)	1859
VneI	GTGCAC	1 cut(s)	1433
VpaK11BI	GGWCC	4 cut(s)	839, 1260, 1414, 1983
XapI	RAATTY	2 cut(s)	629, 1636
XbaI	TCTAGA	1 cut(s)	1813
XceI	RCATGY	4 cut(s)	834, 1007, 1825, 2227
XhoI	CTCGAG	1 cut(s)	578
XspI	CTAG	5 cut(s)	72, 485, 731, 797, 1814
Zsp2I	ATGCAT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.