Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004665

Physical Location & Seq

Genomic Coordinates Reverse (-)

7116929 .. 7122304

Gene Structure 5376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10620.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTGCTCTCCCTCTCGGCAAGCTCACCATCCTCGTGGGCGCAGGCATTCTTGGTTCAGTTCTTGCAAAAGAAGGACGTGTATCTGATGTTGTCTCTGGTGCTTTCAAGATTGCATGGAAACAAATTATACGAAGTGATAGTACTCCGGCGGCTAAGAAACCACACAACGACCATCTGATGGCTCAGATGAACAACCTGCGGAAGGAGCTGGAGATAATAGCATCAAGTCCTCGGCAACCAGTTACAATTATAACTATGGGTCGAACAGGTACTAGCAAATATGGTATAATTATTGTTGTAGTAGCGGCGGGATATGGCTACTTGTGGTGGAAGGGGTGGAAGCTTCCTGATATGATGTTTGCAACAAGACGTAGCTTATCCGATGCTTCCAATTCTGTTGCTAAACAGCTTGAGAGTCTGTTTACATCAATTTCGAGCACTCGGAGGAAATTATCTTCACAACTTGATCATGTGGAATGTAGTTTGGATGAAAGTATTGAAAATACTGCTAGGACGCAACAGGAGGTTATCACACTACAAGGAAGGACGGATACCATTAGCAGAGATTTTAAAAAAGTTCATCACGCAGTGCTGACTCTGGAAACAAAAATTAATAGAATCGAAGGGAAGCAGGGCGAGACTGCTGATGGAGTCTGGAAGTTGTGTGACTATGCCCTGAACATGGAAAAGGGCAGAAACACAGAACGCATTCAGGCGTCACCCTCCAGCTTTTCCAGGTCAGTTCTTGAACTACCACCAGACTCCCCCTCGTCTTTGGTGACACCACTGAAGTCCCCGAGGCCAGCACTTGAGCTACCCCCAACGTCACCCTCAAGGGAGAATAGTGGAATCTTGGAAGTGGTTGAGTCCTCAAATCGTGGTGAGGCTTCCAATGGGATTCGTGCCCAAGAAGGCACAAACAAAGCGGCTTCCAGTTCTGGTTGGTTTGGGTTCGGGTTTCCAACCTTCAATAGTTCGGCGCTCCAGAGGACGCGAAGTGCTACAACTGGAATGGTGCAACAGAAACGATCAACCAGTCAACCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

351

Amino Acids

38.13

Weight (kDa)

9.76

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24265 AT1G24265 AT1G24265 AT1G24267 AT1G24267
fragaria_vesca	FvH4_4g23490 FvH4_4g23490
malus_domestica	MD13G1122000.v1.1 MD16G1122300.v1.1
prunus_persica	Prupe.1G223300_v2.0.a1
pyrus_communis	pycom13g10620 pycom16g10470
rosa_chinensis	RchiOBHm_Chr4g0429881
rosa_laevigata	RLG00000007029 RLG00000007031 RLG00000007036
rosa_multiflora	Rmu_sc0002225.1_g000009
rosa_roxburghii	Rroxscaffold_5G00371640
rosa_rugosa	Rorug02G0194400 Rorug02G0194500.1 Rorug02G0194600 Rorug04G0110100 Rorug04G0110500 Rorug04G0238700 Rorug06G0144100
rosa_samantha	Rh4AG295100 Rh4BG086200 Rh4BG301500 Rh4CG316800 Rh4DG298700
rosa_wichuraiana	Rw4G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	1 cut(s)	997
AciI	CCGC	5 cut(s)	152, 202, 308, 311, 929
AcuI	CTGAAG	1 cut(s)	812
AcyI	GRCGYC	1 cut(s)	719
AdeI	CACNNNGTG	1 cut(s)	592
AfaI	GTAC	2 cut(s)	145, 274
AfiI	CCNNNNNNNGG	3 cut(s)	181, 205, 685
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	109, 503, 752, 973
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	737
AluBI	AGCT	7 cut(s)	25, 211, 346, 378, 412, 732, 817
AluI	AGCT	7 cut(s)	25, 211, 346, 378, 412, 732, 817
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	100, 635
Ama87I	CYCGRG	1 cut(s)	799
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	2 cut(s)	44, 985
AsuHPI	GGTGA	5 cut(s)	19, 714, 793, 822, 896
AvaI	CYCGRG	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	910
BarI	GAAGNNNNNNTAC	4 cut(s)	127, 159, 538, 570
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	443
BccI	CCATC	4 cut(s)	38, 175, 183, 644
BciT130I	CCWGG	1 cut(s)	739
BciVI	GTATCC	1 cut(s)	547
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	100, 635
BfaI	CTAG	2 cut(s)	276, 513
BfoI	RGCGCY	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	4 cut(s)	6, 153, 309, 930
BlsI	GCNGC	4 cut(s)	7, 154, 310, 931
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	739
BmeT110I	CYCGRG	1 cut(s)	799
BmgBI	CACGTC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	739
BmsI	GCATC	2 cut(s)	233, 376
BpmI	CTGGAG	3 cut(s)	233, 712, 971
BpuEI	CTTGAG	3 cut(s)	434, 820, 833
BsaHI	GRCGYC	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	233, 800
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 205, 685
Bse1I	ACTGG	4 cut(s)	242, 936, 1015, 1038
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	2 cut(s)	233, 800
BseGI	GGATG	2 cut(s)	30, 496
BseLI	CCNNNNNNNGG	3 cut(s)	181, 205, 685
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	4 cut(s)	242, 936, 1015, 1038
BseSI	GKGCMC	1 cut(s)	910
Bsh1236I	CGCG	1 cut(s)	997
BshFI	GGCC	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	799
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	3 cut(s)	181, 205, 685
BsmAI	GTCTC	2 cut(s)	100, 635
BsmFI	GGGAC	1 cut(s)	781
BsmI	GAATGC	2 cut(s)	48, 711
BsnI	GGCC	1 cut(s)	805
BsoBI	CYCGRG	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	443, 910
Bsp143I	GATC	2 cut(s)	469, 1031
BspACI	CCGC	5 cut(s)	152, 202, 308, 311, 929
BspANI	GGCC	1 cut(s)	805
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	997
BspMI	ACCTGC	1 cut(s)	207
BsrI	ACTGG	4 cut(s)	242, 936, 1015, 1038
BssECI	CCNNGG	2 cut(s)	233, 800
BssMI	GATC	2 cut(s)	469, 1031
BssNI	GRCGYC	1 cut(s)	719
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	739
BstACI	GRCGYC	1 cut(s)	719
BstC8I	GCNNGC	3 cut(s)	23, 46, 807
BstDEI	CTNAG	2 cut(s)	156, 186
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	30, 496
BstFNI	CGCG	1 cut(s)	997
BstH2I	RGCGCY	1 cut(s)	986
BstHHI	GCGC	2 cut(s)	44, 985
BstKTI	GATC	2 cut(s)	472, 1034
BstMAI	GTCTC	2 cut(s)	100, 635
BstMBI	GATC	2 cut(s)	469, 1031
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	739
BstSCI	CCNGG	1 cut(s)	737
BstSLI	GKGCMC	1 cut(s)	910
BstUI	CGCG	1 cut(s)	997
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	805
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	30, 496
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	597, 788
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	23, 46, 807
CfoI	GCGC	2 cut(s)	44, 985
CseI	GACGC	3 cut(s)	526, 708, 1003
Csp6I	GTAC	2 cut(s)	144, 273
CviAII	CATG	3 cut(s)	117, 473, 685
CviQI	GTAC	2 cut(s)	144, 273
DdeI	CTNAG	2 cut(s)	156, 186
DpnI	GATC	2 cut(s)	471, 1033
DpnII	GATC	2 cut(s)	469, 1031
DraI	TTTAAA	1 cut(s)	574
DraIII	CACNNNGTG	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	799
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	737
FaeI	CATG	3 cut(s)	120, 476, 688
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	3 cut(s)	116, 472, 684
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	6, 153, 309, 930
FokI	GGATG	2 cut(s)	17, 503
Fsp4HI	GCNGC	4 cut(s)	6, 153, 309, 930
FspBI	CTAG	2 cut(s)	276, 513
GlaI	GCGC	2 cut(s)	43, 984
GluI	GCNGC	4 cut(s)	6, 153, 309, 930
GsuI	CTGGAG	3 cut(s)	233, 712, 971
HaeII	RGCGCY	1 cut(s)	986
HaeIII	GGCC	1 cut(s)	805
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	3 cut(s)	526, 708, 1003
HhaI	GCGC	2 cut(s)	44, 985
Hin1I	GRCGYC	1 cut(s)	719
Hin1II	CATG	3 cut(s)	120, 476, 688
Hin6I	GCGC	2 cut(s)	42, 983
HinP1I	GCGC	2 cut(s)	42, 983
HincII	GTYRAC	1 cut(s)	1043
HindII	GTYRAC	1 cut(s)	1043
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	8 cut(s)	418, 598, 621, 654, 764, 852, 869, 901
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	5 cut(s)	19, 714, 793, 822, 896
Hpy166II	GTNNAC	2 cut(s)	426, 1043
Hpy188I	TCNGA	5 cut(s)	88, 180, 189, 385, 447
Hpy188III	TCNNGA	6 cut(s)	109, 350, 602, 658, 749, 988
Hpy8I	GTNNAC	2 cut(s)	426, 1043
HpyAV	CCTTC	7 cut(s)	68, 199, 328, 540, 620, 908, 979
HpyCH4IV	ACGT	3 cut(s)	79, 373, 827
HpyCH4V	TGCA	4 cut(s)	68, 116, 365, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	156, 186
HpySE526I	ACGT	3 cut(s)	79, 373, 827
Hsp92I	GRCGYC	1 cut(s)	719
Hsp92II	CATG	3 cut(s)	120, 476, 688
HspAI	GCGC	2 cut(s)	42, 983
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	469, 1031
LmnI	GCTCC	2 cut(s)	208, 990
LweI	GCATC	2 cut(s)	233, 376
MaeI	CTAG	2 cut(s)	276, 513
MaeII	ACGT	3 cut(s)	79, 373, 827
MaeIII	GTNAC	5 cut(s)	244, 668, 720, 781, 828
MalI	GATC	2 cut(s)	471, 1033
MboI	GATC	2 cut(s)	469, 1031
MboII	GAAGA	1 cut(s)	450
MhlI	GDGCHC	2 cut(s)	443, 910
MluCI	AATT	7 cut(s)	126, 249, 291, 394, 432, 452, 612
MlyI	GAGTC	5 cut(s)	427, 592, 663, 758, 878
MmeI	TCCRAC	1 cut(s)	989
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	2 cut(s)	573, 615
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	739
Mva1269I	GAATGC	2 cut(s)	48, 711
MvaI	CCWGG	1 cut(s)	739
MvnI	CGCG	1 cut(s)	997
MwoI	GCNNNNNNNGC	1 cut(s)	208
NdeII	GATC	2 cut(s)	469, 1031
NlaIII	CATG	3 cut(s)	120, 476, 688
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	4 cut(s)	668, 720, 781, 828
PctI	GAATGC	2 cut(s)	48, 711
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	621, 852, 901
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	7, 154, 310, 931
PleI	GAGTC	5 cut(s)	426, 592, 662, 758, 877
PpsI	GAGTC	5 cut(s)	426, 592, 662, 758, 877
PshBI	ATTAAT	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	737
RsaI	GTAC	2 cut(s)	145, 274
RsaNI	GTAC	2 cut(s)	144, 273
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	573, 615
SatI	GCNGC	4 cut(s)	6, 153, 309, 930
Sau3AI	GATC	2 cut(s)	469, 1031
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	5 cut(s)	427, 592, 663, 758, 878
ScrFI	CCNGG	1 cut(s)	739
SduI	GDGCHC	2 cut(s)	443, 910
SfaNI	GCATC	2 cut(s)	233, 376
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	3 cut(s)	413, 812, 835
SmoI	CTYRAG	3 cut(s)	413, 812, 835
Sse9I	AATT	7 cut(s)	126, 249, 291, 394, 432, 452, 612
SsiI	CCGC	5 cut(s)	152, 202, 308, 311, 929
SspMI	CTAG	2 cut(s)	276, 513
StyD4I	CCNGG	1 cut(s)	737
TaiI	ACGT	3 cut(s)	82, 376, 830
TaqI	TCGA	3 cut(s)	265, 437, 624
TasI	AATT	7 cut(s)	126, 249, 291, 394, 432, 452, 612
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	3 cut(s)	155, 311, 932
TfiI	GAWTC	3 cut(s)	621, 852, 901
Tru1I	TTAA	2 cut(s)	573, 615
Tru9I	TTAA	2 cut(s)	573, 615
TscAI	CASTG	2 cut(s)	597, 795
TseFI	GTSAC	4 cut(s)	668, 720, 781, 828
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	4 cut(s)	668, 720, 781, 828
TspDTI	ATGAA	3 cut(s)	206, 507, 572
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	597, 795
Van91I	CCANNNNNTGG	1 cut(s)	181
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	276, 513
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.