RLG00000007029

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004665
Physical Location & Seq
Reverse (-)
12792974 .. 12799081
6108 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007029

Sequence Viewer

Length: 840 bp
ATGGCTCTGCCTCTGGTCAAGGTCGGGATTCTCGTCGGTGCAGGCATTCTTGGTTCATACCTTGCTAAGGAAGGACGTGTATCTGATGTGGTCTCTGGTGCATTCAAGAAACCATCCAACGATGCTTTGATGGCTCAGATGAACAAAATATGGCAGGAGCTGCAGTCATATTCGTCAAGTGGACCAGTTACAATTGTAACTGGGAGTGCTAGCAGAAATGGTATAATTATTGTTGTAGTAGTGGCAGGATATGGTTACTTTTGGTGGAAGGTAAGAGGTTTGTGGAAACTTCCTGATATGATGTTTGCAACAAGACGTAGCTTAGCTGATGCTGGCAAGTCTTTTTCTAAACAGATTGACGGTGCGACAATTATCTTCAAACTTGGATCGGTGGACTGTAATGTAGCTGAGAGTATTGAAATTACCGTTAGGACACAACAGGAGGTTATTGAACTACAAGGAAAAACAGATTCCATCAGCACGGATTTTAGAAAAGTTCAACATGCAGTGCTGACTCTGGAAACTAAGATTAACAGAATAGAAGTGTGGAGGTTGTGTCACTATGCCAACAGATTGGAAAATAGCAGAACCACAGAACGTATTCAGGTGACACCACCAAAGTCCTCAAGGCCAGCACTCGAGCTACCCCCAGCATCACCCTCAAGAGAGAATAATGGAATTTCAGATGTGTTTGACCCTTCAGCTTCGGAAAGCACAAGCAATAGAGCTTCCAATTCTGGTCGATTTGGGTTCAAGTACCCAACCTCTAATACTTCAACAATCCCAAGGACGCCCAAGTGCTACAGTTGGAATGCTGCAACAGAATCGATCAGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

280

Amino Acids

30.57

Weight (kDa)

9.51

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 76 - 181 1.5e-21 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 791
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 7 cut(s) 106, 379, 419, 452, 500, 754, 777
AjiI CACGTC 1 cut(s) 77
AluBI AGCT 7 cut(s) 160, 321, 326, 407, 643, 704, 728
AluI AGCT 7 cut(s) 160, 321, 326, 407, 643, 704, 728
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 1 cut(s) 394
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 2 cut(s) 160, 815
ApoI RAATTY 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 619, 648
AsuNHI GCTAGC 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 147, 802
BccI CCATC 3 cut(s) 121, 124, 482
BcgI CGANNNNNNTGC 1 cut(s) 807
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 2 cut(s) 161, 802
BisI GCNGC 2 cut(s) 161, 816
BlpI GCTNAGC 1 cut(s) 322
BlsI GCNGC 2 cut(s) 162, 817
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 3 cut(s) 112, 319, 662
BmtI GCTAGC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 66
Bpu1102I GCTNAGC 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 610, 646
Bsa29I ATCGAT 1 cut(s) 827
BsaHI GRCGYC 1 cut(s) 791
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 785
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 541, 571
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 3 cut(s) 185, 205, 835
BseCI ATCGAT 1 cut(s) 827
BseDI CCNNGG 1 cut(s) 785
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 149, 399
BseNI ACTGG 3 cut(s) 185, 205, 835
BseXI GCAGC 2 cut(s) 147, 802
BseYI CCCAGC 1 cut(s) 649
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 1 cut(s) 631
BshVI ATCGAT 1 cut(s) 827
BsiHKCI CYCGRG 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 97
BsmI GAATGC 3 cut(s) 45, 101, 817
BsnI GGCC 1 cut(s) 631
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 638
Bsp143I GATC 2 cut(s) 386, 828
Bsp1720I GCTNAGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 2 cut(s) 148, 400
BspDI ATCGAT 1 cut(s) 827
BspMAI CTGCAG 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 97
BsrI ACTGG 3 cut(s) 185, 205, 835
BssECI CCNNGG 1 cut(s) 785
BssMI GATC 2 cut(s) 386, 828
BssNI GRCGYC 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 785
Bst4CI ACNGT 4 cut(s) 362, 398, 427, 806
BstACI GRCGYC 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 4 cut(s) 43, 211, 334, 633
BstDEI CTNAG 5 cut(s) 66, 135, 322, 408, 525
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 2 cut(s) 389, 831
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 386, 828
BstMWI GCNNNNNNNGC 2 cut(s) 131, 160
BstNSI RCATGY 1 cut(s) 506
BstSFI CTRYAG 2 cut(s) 161, 802
BstV1I GCAGC 2 cut(s) 147, 802
BstXI CCANNNNNNTGG 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 827
BsuRI GGCC 1 cut(s) 631
BsuTUI ATCGAT 1 cut(s) 827
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 4 cut(s) 43, 211, 334, 633
CaiI CAGNNNCTG 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 827
CseI GACGC 1 cut(s) 799
Csp6I GTAC 1 cut(s) 757
CviAII CATG 1 cut(s) 503
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 5 cut(s) 66, 135, 322, 408, 525
DpnI GATC 2 cut(s) 388, 830
DpnII GATC 2 cut(s) 386, 828
Eco130I CCWWGG 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 785
FaeI CATG 1 cut(s) 506
FaiI YATR 8 cut(s) 58, 151, 169, 224, 252, 299, 504, 564
FatI CATG 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 161, 816
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 161, 816
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 161, 816
GsaI CCCAGC 1 cut(s) 653
HaeIII GGCC 1 cut(s) 631
HgaI GACGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 791
Hin1II CATG 1 cut(s) 506
HinfI GANTC 4 cut(s) 28, 470, 514, 824
HphI GGTGA 2 cut(s) 619, 648
Hpy166II GTNNAC 2 cut(s) 182, 394
Hpy188I TCNGA 4 cut(s) 85, 138, 685, 709
Hpy188III TCNNGA 5 cut(s) 25, 106, 293, 518, 663
Hpy8I GTNNAC 2 cut(s) 182, 394
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 65, 262, 708
HpyCH4III ACNGT 4 cut(s) 362, 398, 427, 806
HpyCH4IV ACGT 3 cut(s) 76, 316, 598
HpyCH4V TGCA 6 cut(s) 41, 101, 163, 308, 506, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 160
HpyF3I CTNAG 5 cut(s) 66, 135, 322, 408, 525
HpySE526I ACGT 3 cut(s) 76, 316, 598
Hsp92I GRCGYC 1 cut(s) 791
Hsp92II CATG 1 cut(s) 506
Kzo9I GATC 2 cut(s) 386, 828
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 147, 802
LweI GCATC 3 cut(s) 112, 319, 662
MaeI CTAG 1 cut(s) 210
MaeII ACGT 3 cut(s) 76, 316, 598
MaeIII GTNAC 5 cut(s) 187, 196, 254, 557, 607
MalI GATC 2 cut(s) 388, 830
MboI GATC 2 cut(s) 386, 828
MboII GAAGA 1 cut(s) 367
MfeI CAATTG 1 cut(s) 192
MluCI AATT 6 cut(s) 192, 225, 369, 420, 678, 733
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 2 cut(s) 141, 788
MnlI CCTC 7 cut(s) 21, 269, 436, 543, 634, 670, 775
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 1 cut(s) 531
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 3 cut(s) 45, 101, 817
MwoI GCNNNNNNNGC 2 cut(s) 131, 160
NdeII GATC 2 cut(s) 386, 828
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 506
NmuCI GTSAC 2 cut(s) 557, 607
NspI RCATGY 1 cut(s) 506
PaeR7I CTCGAG 1 cut(s) 638
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 3 cut(s) 45, 101, 817
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 3 cut(s) 28, 470, 824
PkrI GCNGC 2 cut(s) 162, 817
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 649
PspPI GGNCC 1 cut(s) 182
PspXI VCTCGAGB 1 cut(s) 638
PstI CTGCAG 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 2 cut(s) 161, 816
Sau3AI GATC 2 cut(s) 386, 828
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 508
SfaNI GCATC 3 cut(s) 112, 319, 662
SfcI CTRYAG 2 cut(s) 161, 802
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 638
SmlI CTYRAG 3 cut(s) 625, 638, 661
SmoI CTYRAG 3 cut(s) 625, 638, 661
Sse9I AATT 6 cut(s) 192, 225, 369, 420, 678, 733
SspMI CTAG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 4 cut(s) 362, 398, 427, 806
TaiI ACGT 3 cut(s) 79, 319, 601
TaqI TCGA 3 cut(s) 639, 742, 827
TasI AATT 6 cut(s) 192, 225, 369, 420, 678, 733
TfiI GAWTC 3 cut(s) 28, 470, 824
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 2 cut(s) 557, 607
TseI GCWGC 2 cut(s) 160, 815
Tsp45I GTSAC 2 cut(s) 557, 607
TspDTI ATGAA 2 cut(s) 45, 155
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 1 cut(s) 678
XceI RCATGY 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.