Rorug02G0194600

Protein of unknown function (DUF1664)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
18150183 .. 18150998
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0194600.1

Sequence Viewer

Length: 291 bp
ATGTATGCACTATTTGTTATGCCTTTAGCTCCTAGACTGAGTTGCCCTCCTATTAGGAGAATAACAGCTACAAGAGATAAGGAGGATAATGCATTGGAATATGGATTGCCATCTTCTCACACTATATACACAGTTTGCTTGTCTAGATACCTTTTGCATTGCATCCTATCTTATGCTCAGAATGAAGAGGCCTATGTGAAATTTGCTAGATTTGCTCTTGTTTGCTTGCTCGTTGGTCTCATTGGTTTGGTCCTGTTGATATCATTGGTGAGCTTGTTGTTGGTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.72

Weight (kDa)

8.42

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 200
AluBI AGCT 3 cut(s) 29, 68, 273
AluI AGCT 3 cut(s) 29, 68, 273
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 250
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 3 cut(s) 33, 144, 207
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmsI GCATC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BsaBI GATNNNNATC 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 109
BseGI GGATG 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 109
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 29, 191
BshFI GGCC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 242
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 30, 190
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 38, 177
BstF5I GGATG 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 250
CviJI RGCY 5 cut(s) 29, 68, 191, 273, 288
CviKI_1 RGCY 5 cut(s) 29, 68, 191, 273, 288
DdeI CTNAG 2 cut(s) 38, 177
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 94
FaiI YATR 7 cut(s) 6, 20, 102, 125, 127, 174, 195
FokI GGATG 1 cut(s) 149
FspBI CTAG 3 cut(s) 33, 144, 207
HaeIII GGCC 1 cut(s) 191
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 4 cut(s) 8, 92, 157, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 38, 177
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 1 cut(s) 266
LweI GCATC 1 cut(s) 171
MaeI CTAG 3 cut(s) 33, 144, 207
MboII GAAGA 2 cut(s) 105, 197
MluCI AATT 1 cut(s) 200
MnlI CCTC 3 cut(s) 57, 76, 181
Mph1103I ATGCAT 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 94
PceI AGGCCT 1 cut(s) 191
PspPI GGNCC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 250
SetI ASST 4 cut(s) 31, 70, 153, 275
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 1 cut(s) 250
Sse9I AATT 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 191
SspMI CTAG 3 cut(s) 33, 144, 207
StuI AGGCCT 1 cut(s) 191
TaaI ACNGT 1 cut(s) 133
TasI AATT 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 143
XspI CTAG 3 cut(s) 33, 144, 207
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.