RchiOBHm_Chr4g0429881

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004665
Physical Location & Seq
Forward (+)
54583951 .. 54596915
12965 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39865

Sequence Viewer

Length: 1017 bp
ATGGCTCTGCCTCTGGTCAAGGTCGGGATTCTCGTCGGTGCAGGCATTCTTGGTTCGTACCTTGCTAAGGAAGGACGTGTATCTGATGTGGTCTCTGGTGCATTCAAGATTGCTTGGAAGCAAATGCGAGACGATAAAAGTAAAACTCCCTCGGTTAAGAAACCATCCAATGATGCTTTGATGGCTCAGATGAACAAAATACGGCAGGAGCTGCAGTCATATTCGTCAAGTGGACCAATTACAATTGTAACTGGGAGTCGAACAGGTGCTAGCAGATATGGTATAATTATTGTTGTAGTAGTGGCAGGATATGGCTACTTTTGGTGGAAGGGGTGGAAACTTCCTGATATGATGTTTGCAACAAGACGTAGTTTAGCTGATGCTGGCAAGTCTTTTTCTAAACAGATTGATGGTGTCTTTTCATCGATTTCAGTCACCAGGCGACAATTATCTTCAAACTTGGATGGTGTGGACCGTAATTTAGCTGAGAGTATTGAAACTACTGTTAGGACACAACAGGAGGTTATTGAACTACAAGGAAAAACAGATTCCATCAGCACGGATTTTAGAAAAGTTCAACATGCAGTGCTGACTCTGGAAACTAAGATTAACAGAATAGAAGGCAAGCAGGATTCAACTAATGATGGAGTGTGGAGGTTGTGTGACTATGCCAAGAGATTGGAAAATAGCAGAGCCACAGAACGTATTCAGGCATCACCGTCCAACTCTTCTAGGCGACCTCTTGAACTACCGCCAGCCTCACCCTCATCTTTGGTGACACCACCGAAGTCCTCAAGGCCAGCACTCGAGCTACCCCCAGCATCACCCTCAAGAGAGAATAATGGAATTTCAGATGTGTTTGACCCATCAGCTTCAGAAAGCACAAGCAATGGAGCTTCCAGTTCTGGTCGATTTGGGTTTAAGTACCCAACCTCTAATACTTCAACAATCCTAAGGACGCGAAGTGCTACAGTTGGGATGCTGCAACAGAATCGATCAGCCAGTAGACAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

338

Amino Acids

36.86

Weight (kDa)

10.02

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 91 - 210 1.7e-39 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1006
AccII CGCG 1 cut(s) 961
AciI CCGC 1 cut(s) 752
AcsI RAATTY 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 858
AfaI GTAC 2 cut(s) 59, 926
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 8 cut(s) 106, 456, 497, 530, 578, 636, 746, 945
AjiI CACGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 6 cut(s) 211, 377, 485, 811, 872, 896
AluI AGCT 6 cut(s) 211, 377, 485, 811, 872, 896
Alw26I GTCTC 2 cut(s) 97, 123
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 1 cut(s) 797
ApeKI GCWGC 2 cut(s) 211, 982
ApoI RAATTY 1 cut(s) 846
Asp700I GAANNNNTTC 1 cut(s) 705
AspS9I GGNCC 2 cut(s) 233, 472
AsuHPI GGTGA 5 cut(s) 427, 708, 753, 787, 816
AsuNHI GCTAGC 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 806
AvaII GGWCC 2 cut(s) 233, 472
AxyI CCTNAGG 1 cut(s) 953
BbvI GCAGC 2 cut(s) 198, 969
BccI CCATC 7 cut(s) 172, 175, 404, 458, 560, 638, 874
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BciT130I CCWGG 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 97, 123
BfaI CTAG 2 cut(s) 270, 732
BfmI CTRYAG 2 cut(s) 212, 969
BisI GCNGC 2 cut(s) 212, 983
BlsI GCNGC 2 cut(s) 213, 984
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 233, 472
BmeT110I CYCGRG 1 cut(s) 806
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 233, 472
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 5 cut(s) 163, 370, 722, 830, 969
BmtI GCTAGC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 66
BpuEI CTTGAG 2 cut(s) 778, 814
Bsa29I ATCGAT 2 cut(s) 425, 994
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 646, 676
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 3 cut(s) 256, 900, 1002
Bse21I CCTNAGG 1 cut(s) 953
Bse3DI GCAATG 1 cut(s) 895
BseBI CCWGG 1 cut(s) 439
BseCI ATCGAT 2 cut(s) 425, 994
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 3 cut(s) 164, 469, 984
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 895
BseMII CTCAG 2 cut(s) 200, 477
BseNI ACTGG 3 cut(s) 256, 900, 1002
BseXI GCAGC 2 cut(s) 198, 969
BseYI CCCAGC 1 cut(s) 817
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 961
BshFI GGCC 1 cut(s) 799
BshVI ATCGAT 2 cut(s) 425, 994
BsiHKCI CYCGRG 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 97, 123
BsmBI CGTCTC 1 cut(s) 123
BsmI GAATGC 2 cut(s) 45, 101
BsnI GGCC 1 cut(s) 799
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 806
Bsp143I GATC 1 cut(s) 995
BspACI CCGC 1 cut(s) 752
BspANI GGCC 1 cut(s) 799
BspCNI CTCAG 2 cut(s) 199, 478
BspDI ATCGAT 2 cut(s) 425, 994
BspFNI CGCG 1 cut(s) 961
BspMAI CTGCAG 1 cut(s) 216
BspOI GCTAGC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 895
BsrI ACTGG 3 cut(s) 256, 900, 1002
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 995
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 5 cut(s) 476, 505, 720, 973, 1011
Bst6I CTCTTC 1 cut(s) 733
BstAPI GCANNNNNTGC 1 cut(s) 211
BstC8I GCNNGC 6 cut(s) 43, 271, 385, 626, 756, 801
BstDEI CTNAG 5 cut(s) 66, 186, 486, 603, 953
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 3 cut(s) 164, 469, 984
BstFNI CGCG 1 cut(s) 961
BstKTI GATC 1 cut(s) 998
BstMAI GTCTC 2 cut(s) 97, 123
BstMBI GATC 1 cut(s) 995
BstMWI GCNNNNNNNGC 2 cut(s) 182, 211
BstNI CCWGG 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 2 cut(s) 212, 969
BstUI CGCG 1 cut(s) 961
BstV1I GCAGC 2 cut(s) 198, 969
BstXI CCANNNNNNTGG 1 cut(s) 679
Bsu15I ATCGAT 2 cut(s) 425, 994
Bsu36I CCTNAGG 1 cut(s) 953
BsuRI GGCC 1 cut(s) 799
BsuTUI ATCGAT 2 cut(s) 425, 994
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 3 cut(s) 164, 469, 984
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 6 cut(s) 43, 271, 385, 626, 756, 801
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 233, 472
ClaI ATCGAT 2 cut(s) 425, 994
CseI GACGC 1 cut(s) 967
Csp6I GTAC 2 cut(s) 58, 925
CviAII CATG 1 cut(s) 581
CviQI GTAC 2 cut(s) 58, 925
DdeI CTNAG 5 cut(s) 66, 186, 486, 603, 953
DpnI GATC 1 cut(s) 997
DpnII GATC 1 cut(s) 995
Eam1104I CTCTTC 1 cut(s) 733
EarI CTCTTC 1 cut(s) 733
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 233, 472
Eco57I CTGAAG 1 cut(s) 858
Eco81I CCTNAGG 1 cut(s) 953
Eco88I CYCGRG 1 cut(s) 806
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 437
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 1 cut(s) 584
FaiI YATR 7 cut(s) 220, 279, 284, 312, 350, 582, 669
FatI CATG 1 cut(s) 580
FblI GTMKAC 1 cut(s) 1006
Fnu4HI GCNGC 2 cut(s) 212, 983
FokI GGATG 3 cut(s) 151, 476, 991
Fsp4HI GCNGC 2 cut(s) 212, 983
FspBI CTAG 2 cut(s) 270, 732
GluI GCNGC 2 cut(s) 212, 983
GsaI CCCAGC 1 cut(s) 821
HaeIII GGCC 1 cut(s) 799
HgaI GACGC 1 cut(s) 967
Hin1II CATG 1 cut(s) 584
HinfI GANTC 6 cut(s) 28, 256, 548, 592, 632, 991
HphI GGTGA 5 cut(s) 427, 708, 753, 787, 816
Hpy166II GTNNAC 3 cut(s) 233, 472, 1007
Hpy188I TCNGA 5 cut(s) 85, 189, 853, 877, 1016
Hpy188III TCNNGA 6 cut(s) 25, 106, 344, 596, 743, 831
Hpy8I GTNNAC 3 cut(s) 233, 472, 1007
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 65, 322, 614
HpyCH4III ACNGT 5 cut(s) 476, 505, 720, 973, 1011
HpyCH4IV ACGT 3 cut(s) 76, 367, 703
HpyCH4V TGCA 6 cut(s) 41, 101, 214, 359, 584, 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 211
HpyF3I CTNAG 5 cut(s) 66, 186, 486, 603, 953
HpySE526I ACGT 3 cut(s) 76, 367, 703
Hsp92II CATG 1 cut(s) 584
Kzo9I GATC 1 cut(s) 995
LmnI GCTCC 2 cut(s) 208, 893
Lsp1109I GCAGC 2 cut(s) 198, 969
LweI GCATC 5 cut(s) 163, 370, 722, 830, 969
MaeI CTAG 2 cut(s) 270, 732
MaeII ACGT 3 cut(s) 76, 367, 703
MaeIII GTNAC 4 cut(s) 247, 433, 662, 775
MalI GATC 1 cut(s) 997
MboI GATC 1 cut(s) 995
MboII GAAGA 2 cut(s) 444, 720
MfeI CAATTG 1 cut(s) 243
MluCI AATT 6 cut(s) 237, 243, 285, 446, 478, 846
MlyI GAGTC 2 cut(s) 265, 586
MmeI TCCRAC 1 cut(s) 747
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 3 cut(s) 156, 609, 921
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 2 cut(s) 45, 101
MvaI CCWGG 1 cut(s) 439
MvnI CGCG 1 cut(s) 961
MwoI GCNNNNNNNGC 2 cut(s) 182, 211
NdeII GATC 1 cut(s) 995
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 1 cut(s) 584
NmuCI GTSAC 3 cut(s) 433, 662, 775
NspI RCATGY 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 806
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 2 cut(s) 45, 101
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 4 cut(s) 28, 548, 632, 991
PkrI GCNGC 2 cut(s) 213, 984
PleI GAGTC 2 cut(s) 264, 586
PpsI GAGTC 2 cut(s) 264, 586
Psp6I CCWGG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 817
PspGI CCWGG 1 cut(s) 437
PspPI GGNCC 2 cut(s) 233, 472
PspXI VCTCGAGB 1 cut(s) 806
PstI CTGCAG 1 cut(s) 216
PstNI CAGNNNCTG 1 cut(s) 211
RsaI GTAC 2 cut(s) 59, 926
RsaNI GTAC 2 cut(s) 58, 925
SaqAI TTAA 3 cut(s) 156, 609, 921
SatI GCNGC 2 cut(s) 212, 983
Sau3AI GATC 1 cut(s) 995
Sau96I GGNCC 2 cut(s) 233, 472
SchI GAGTC 2 cut(s) 265, 586
ScrFI CCNGG 1 cut(s) 439
SfaNI GCATC 5 cut(s) 163, 370, 722, 830, 969
SfcI CTRYAG 2 cut(s) 212, 969
Sfr274I CTCGAG 1 cut(s) 806
SinI GGWCC 2 cut(s) 233, 472
SlaI CTCGAG 1 cut(s) 806
SmlI CTYRAG 3 cut(s) 793, 806, 829
SmoI CTYRAG 3 cut(s) 793, 806, 829
Sse9I AATT 6 cut(s) 237, 243, 285, 446, 478, 846
SsiI CCGC 1 cut(s) 752
SspMI CTAG 2 cut(s) 270, 732
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 5 cut(s) 476, 505, 720, 973, 1011
TaiI ACGT 3 cut(s) 79, 370, 706
TaqI TCGA 5 cut(s) 259, 425, 807, 910, 994
TasI AATT 6 cut(s) 237, 243, 285, 446, 478, 846
TfiI GAWTC 4 cut(s) 28, 548, 632, 991
Tru1I TTAA 3 cut(s) 156, 609, 921
Tru9I TTAA 3 cut(s) 156, 609, 921
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 3 cut(s) 433, 662, 775
TseI GCWGC 2 cut(s) 211, 982
Tsp45I GTSAC 3 cut(s) 433, 662, 775
TspDTI ATGAA 2 cut(s) 206, 411
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 233, 472
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 1 cut(s) 846
XceI RCATGY 1 cut(s) 584
XhoI CTCGAG 1 cut(s) 806
XmiI GTMKAC 1 cut(s) 1006
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 2 cut(s) 270, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.