Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004665

Physical Location & Seq

Genomic Coordinates Forward (+)

17355359 .. 17356453

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAACAAATTTCTGAATGATATGGAAACAGAGAAGCCCATCAGATTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAACTTGCTGGGTTCAGGAGGGTTTGGTGCAGTTTATAAAGGAATATTTAGTAACGGAACCTTTGTGGCAGTGAAGGTTCTAAATGGTACCTCGGACAAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGTACCCTTGGCAGGATTCATCATATCAACTTGGTTCGTCTTCATGGTTTCTGCTTTGAGAGACACCTCAGAGCACTTGTTTATGAGTATATGCCAAATGGTTCGCTTGACAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCTGATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGTGAACTTCCTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTCCAACAGAGACAAGACTCATATAACAATGACAGGGTGGAGGGGAACTCGTGGTTATGCTGCACCAGAAGTTTGCCTGCGGTGTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGTAGAAGAAGGAACCTAGACCTGAATCTGCCGGAGAGTCAAGACTGGTTTCCGATGTTGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGAAGAACTAATGGTAGTATGTGGTATAGATGAAAAAGATAAAGAGGCAGCAGAGAGAATGGTAAAAGTAGCTATATGGTGTGTTCAGTATAGCTCTGAGTTGAGGCCTTTGATGAGTGTAGTGGTGAAAATGCTGGAAGGAGCACTTGAAATTCCTAAGCCTTCAATTAACCCATTTCAGTACTTGATGCCAGGTACTCCAATCGTGGCCGCATTACCCGCATATAGCACTAGTGCATTCGACACTGATTTCTCTCAAAAGATAACTGGACATAGCTTCTTGCGTGGTTCTCCTATCATGAGGAGATACGAAATTGAAATAGCATCTAGTATGCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

364

Amino Acids

41.18

Weight (kDa)

6.61

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	28 - 295	2.3e-44	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	30 - 225	3e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24265 AT1G24265 AT1G24265 AT1G24267 AT1G24267
fragaria_vesca	FvH4_4g23490 FvH4_4g23490
malus_domestica	MD13G1122000.v1.1 MD16G1122300.v1.1
prunus_persica	Prupe.1G223300_v2.0.a1
pyrus_communis	pycom13g10620 pycom16g10470
rosa_chinensis	RchiOBHm_Chr4g0429881
rosa_laevigata	RLG00000007029 RLG00000007031 RLG00000007036
rosa_multiflora	Rmu_sc0002225.1_g000009
rosa_roxburghii	Rroxscaffold_5G00371640
rosa_rugosa	Rorug02G0194400 Rorug02G0194500.1 Rorug02G0194600 Rorug04G0110100 Rorug04G0110500 Rorug04G0238700 Rorug06G0144100
rosa_samantha	Rh4AG295100 Rh4BG086200 Rh4BG301500 Rh4CG316800 Rh4DG298700
rosa_wichuraiana	Rw4G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	4 cut(s)	209, 601, 963, 972
AcoI	YGGCCR	2 cut(s)	513, 960
AcsI	RAATTY	2 cut(s)	8, 903
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	5 cut(s)	175, 220, 632, 935, 949
AfiI	CCNNNNNNNGG	2 cut(s)	228, 722
AgsI	TTSAA	5 cut(s)	194, 740, 902, 918, 1070
AhlI	ACTAGT	1 cut(s)	983
AjnI	CCWGG	1 cut(s)	943
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AleI	CACNNNNGTG	1 cut(s)	621
Alw21I	GWGCWC	2 cut(s)	292, 898
Alw26I	GTCTC	2 cut(s)	271, 525
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	3 cut(s)	513, 857, 960
ApeKI	GCWGC	3 cut(s)	430, 581, 800
ApoI	RAATTY	2 cut(s)	8, 903
Asp700I	GAANNNNTTC	2 cut(s)	369, 465
Asp718I	GGTACC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	76, 758, 889
AsuII	TTCGAA	1 cut(s)	363
BalI	TGGCCA	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	2 cut(s)	292, 898
BbvI	GCAGC	3 cut(s)	442, 568, 812
BccI	CCATC	2 cut(s)	47, 720
BciT130I	CCWGG	1 cut(s)	945
BcoDI	GTCTC	2 cut(s)	271, 525
BcuI	ACTAGT	1 cut(s)	983
BfaI	CTAG	5 cut(s)	396, 680, 752, 984, 1080
BisI	GCNGC	4 cut(s)	431, 582, 801, 963
BlsI	GCNGC	4 cut(s)	432, 583, 802, 964
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	1 cut(s)	945
BmiI	GGNNCC	3 cut(s)	145, 175, 677
BmrFI	CCNGG	1 cut(s)	945
BmsI	GCATC	2 cut(s)	930, 1085
BpiI	GAAGAC	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
Bpu10I	CCTNAGC	1 cut(s)	909
Bpu14I	TTCGAA	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	177, 223, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 722
Bse1I	ACTGG	2 cut(s)	713, 1024
BseBI	CCWGG	1 cut(s)	945
BseDI	CCNNGG	3 cut(s)	177, 223, 340
BseGI	GGATG	2 cut(s)	481, 731
BseLI	CCNNNNNNNGG	2 cut(s)	228, 722
BseMII	CTCAG	2 cut(s)	298, 840
BseNI	ACTGG	2 cut(s)	713, 1024
BseRI	GAGGAG	1 cut(s)	1069
BseXI	GCAGC	3 cut(s)	442, 568, 812
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	2 cut(s)	135, 567
BshFI	GGCC	3 cut(s)	515, 859, 962
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	292, 898
BsiSI	CCGG	1 cut(s)	695
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	228, 722
BsmAI	GTCTC	2 cut(s)	271, 525
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	3 cut(s)	428, 648, 989
BsnI	GGCC	3 cut(s)	515, 859, 962
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	292, 898
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	1 cut(s)	657
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	4 cut(s)	209, 601, 963, 972
BspANI	GGCC	3 cut(s)	515, 859, 962
BspCNI	CTCAG	2 cut(s)	297, 841
BspHI	TCATGA	2 cut(s)	373, 1050
BspLI	GGNNCC	3 cut(s)	145, 175, 677
BspT104I	TTCGAA	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	713, 1024
BssECI	CCNNGG	3 cut(s)	177, 223, 340
BssMI	GATC	1 cut(s)	657
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	2 cut(s)	223, 340
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	945
BstAUI	TGTACA	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	428, 599
BstDEI	CTNAG	3 cut(s)	284, 849, 909
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	481, 731
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	2 cut(s)	271, 525
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	1 cut(s)	971
BstNI	CCWGG	1 cut(s)	945
BstSCI	CCNGG	1 cut(s)	943
BstV1I	GCAGC	3 cut(s)	442, 568, 812
BstV2I	GAAGAC	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	515, 859, 962
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	481, 731
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 996
Cac8I	GCNNGC	2 cut(s)	428, 599
CaiI	CAGNNNCTG	1 cut(s)	433
CciI	TCATGA	2 cut(s)	373, 1050
Csp6I	GTAC	5 cut(s)	174, 219, 631, 934, 948
CviAII	CATG	5 cut(s)	205, 260, 341, 374, 1051
CviQI	GTAC	5 cut(s)	174, 219, 631, 934, 948
DdeI	CTNAG	3 cut(s)	284, 849, 909
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	2 cut(s)	513, 960
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	223, 340
Eco147I	AGGCCT	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	943
EcoT14I	CCWWGG	2 cut(s)	223, 340
ErhI	CCWWGG	2 cut(s)	223, 340
FaeI	CATG	5 cut(s)	208, 263, 344, 377, 1054
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	5 cut(s)	204, 259, 340, 373, 1050
FauI	CCCGC	1 cut(s)	979
Fnu4HI	GCNGC	4 cut(s)	431, 582, 801, 963
FokI	GGATG	2 cut(s)	488, 738
Fsp4HI	GCNGC	4 cut(s)	431, 582, 801, 963
FspBI	CTAG	5 cut(s)	396, 680, 752, 984, 1080
GluI	GCNGC	4 cut(s)	431, 582, 801, 963
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	515, 859, 962
HapII	CCGG	1 cut(s)	695
Hin1II	CATG	5 cut(s)	208, 263, 344, 377, 1054
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	5 cut(s)	232, 360, 538, 688, 700
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	3 cut(s)	76, 758, 889
Hpy166II	GTNNAC	4 cut(s)	442, 481, 631, 749
Hpy188I	TCNGA	7 cut(s)	15, 44, 66, 181, 287, 717, 850
Hpy188III	TCNNGA	4 cut(s)	102, 374, 704, 1051
Hpy8I	GTNNAC	4 cut(s)	442, 481, 631, 749
HpyAV	CCTTC	5 cut(s)	154, 497, 666, 884, 924
HpyCH4V	TGCA	6 cut(s)	71, 116, 383, 415, 584, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	971
HpyF3I	CTNAG	3 cut(s)	284, 849, 909
Hsp92II	CATG	5 cut(s)	208, 263, 344, 377, 1054
KpnI	GGTACC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	3 cut(s)	442, 568, 812
LweI	GCATC	2 cut(s)	930, 1085
MaeI	CTAG	5 cut(s)	396, 680, 752, 984, 1080
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	6 cut(s)	206, 248, 431, 681, 742, 767
MhlI	GDGCHC	2 cut(s)	292, 898
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	7 cut(s)	8, 189, 200, 378, 903, 918, 1065
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	2 cut(s)	532, 709
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	8 cut(s)	98, 187, 293, 392, 555, 790, 849, 1047
Mox20I	TGGCCA	1 cut(s)	515
MroXI	GAANNNNTTC	2 cut(s)	369, 465
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	945
Mva1269I	GAATGC	3 cut(s)	428, 648, 989
MvaI	CCWGG	1 cut(s)	945
MwoI	GCNNNNNNNGC	1 cut(s)	971
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	5 cut(s)	208, 263, 344, 377, 1054
NlaIV	GGNNCC	3 cut(s)	145, 175, 677
NspV	TTCGAA	1 cut(s)	363
OliI	CACNNNNGTG	1 cut(s)	621
PagI	TCATGA	2 cut(s)	373, 1050
PceI	AGGCCT	1 cut(s)	859
PctI	GAATGC	3 cut(s)	428, 648, 989
PdmI	GAANNNNTTC	2 cut(s)	369, 465
PfeI	GAWTC	3 cut(s)	232, 360, 688
PkrI	GCNGC	4 cut(s)	432, 583, 802, 964
PleI	GAGTC	2 cut(s)	532, 708
PpsI	GAGTC	2 cut(s)	532, 708
PsiI	TTATAA	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	943
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	943
PspN4I	GGNNCC	3 cut(s)	145, 175, 677
PstNI	CAGNNNCTG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	5 cut(s)	175, 220, 632, 935, 949
RsaNI	GTAC	5 cut(s)	174, 219, 631, 934, 948
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	4 cut(s)	431, 582, 801, 963
Sau3AI	GATC	1 cut(s)	657
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	2 cut(s)	532, 709
ScrFI	CCNGG	1 cut(s)	945
SduI	GDGCHC	2 cut(s)	292, 898
SfaNI	GCATC	2 cut(s)	930, 1085
SfuI	TTCGAA	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	621
SpeI	ACTAGT	1 cut(s)	983
Sse9I	AATT	7 cut(s)	8, 189, 200, 378, 903, 918, 1065
SseBI	AGGCCT	1 cut(s)	859
SsiI	CCGC	4 cut(s)	209, 601, 963, 972
SspI	AATATT	2 cut(s)	132, 466
SspMI	CTAG	5 cut(s)	396, 680, 752, 984, 1080
StuI	AGGCCT	1 cut(s)	859
StyD4I	CCNGG	1 cut(s)	943
StyI	CCWWGG	2 cut(s)	223, 340
TaqI	TCGA	2 cut(s)	363, 993
TasI	AATT	7 cut(s)	8, 189, 200, 378, 903, 918, 1065
TatI	WGTACW	2 cut(s)	630, 933
TauI	GCSGC	1 cut(s)	965
TfiI	GAWTC	3 cut(s)	232, 360, 688
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	2 cut(s)	162, 1003
TseI	GCWGC	3 cut(s)	430, 581, 800
TspDTI	ATGAA	7 cut(s)	17, 193, 224, 248, 362, 390, 798
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	162, 1003
XapI	RAATTY	2 cut(s)	8, 903
XmnI	GAANNNNTTC	2 cut(s)	369, 465
XspI	CTAG	5 cut(s)	396, 680, 752, 984, 1080
ZrmI	AGTACT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.