Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004665

Physical Location & Seq

Genomic Coordinates Reverse (-)

7130356 .. 7137244

Gene Structure 6889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10470.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTGCTCTCCCTCTAGGCAAGCTCACCATTCTCGTCGGCGCAGGCATTCTTGGTTCAGTTCTTGCAAAAGAAGGACGTGTATCTGATGTTGTCTCTGGTGCTTTCAAGATTGCTTGGAAACAAATTAGACGAAGTGATAATACTTCGGCGGTTAATAAACCACACAACGACTCTCTGATGGCTCAGATGAACAACCTACGGAAGGAGCTGGAGATAATAGCATCAAGTCGACCACCAGTTACAGTTATAACTATGAGTCGAACAGGTACTAGCAAATATGGTATAATTATTGTTGTAGTAGCCGCAGGATATGGCTACTTTTGGTGGAAGGGGTGGAAGCTTCCTGACATGATGTTTGCAACAAGACGTAGCTTGTCTGATGCTTCCAATTCTACCACTCAGAGGAAATTGTCTTCACAACTTGACAATGTGGAATGTAGTTTGGATGAAAGTATAGAAAATACGGCAAAGACACAACAGGAGGTTGTTCAACTACAAGGAAGGACGGATACCATTAGCAGAGATTTTAAAAAAGTTCACCACGCAGTGCTGACTCTGGAAACAAAAATTAATAGAATTGAAGGGAAGCAGGGTGAGATTACCGGTGGAGTATGGAAGTTATGTGACTACGCCCTGAACATGGAAAAGGGCATAAATGCAGAACGCATTCAGGCATCACCATCCAGTTTTTCCAGGCCAGTTCTTGAACTACCACCAGCCTCCCCCTCATCTTTGGTGACCCCACCGAAGTCCTCGAGGCCAGCGCTTGAGCTACCCCCAGCATCACCCTCAAGGGGGAATGGTGGAATCTTGGAAGTGGTTGAGTCCTCAAATCGTGGCGAGGCTTCCAGTGAGCTTCGTGCTCCAGAAGGCACAAACAATGCGTCTTCCAGTTCTGGTTGGTTCGGGTTTGGGTTTCCAACTTTTAATAGTTCGGCTCTCCTGAGGACGCGAAGTGCTACAACTGGAATGGTTCAACGGAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

331

Amino Acids

35.75

Weight (kDa)

9.82

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24265 AT1G24265 AT1G24265 AT1G24267 AT1G24267
fragaria_vesca	FvH4_4g23490 FvH4_4g23490
malus_domestica	MD13G1122000.v1.1 MD16G1122300.v1.1
prunus_persica	Prupe.1G223300_v2.0.a1
pyrus_communis	pycom13g10620 pycom16g10470
rosa_chinensis	RchiOBHm_Chr4g0429881
rosa_laevigata	RLG00000007029 RLG00000007031 RLG00000007036
rosa_multiflora	Rmu_sc0002225.1_g000009
rosa_roxburghii	Rroxscaffold_5G00371640
rosa_rugosa	Rorug02G0194400 Rorug02G0194500.1 Rorug02G0194600 Rorug04G0110100 Rorug04G0110500 Rorug04G0238700 Rorug06G0144100
rosa_samantha	Rh4AG295100 Rh4BG086200 Rh4BG301500 Rh4CG316800 Rh4DG298700
rosa_wichuraiana	Rw4G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AbsI	CCTCGAGG	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	232
AccII	CGCG	1 cut(s)	955
AciI	CCGC	2 cut(s)	152, 306
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	1 cut(s)	271
AfeI	AGCGCT	1 cut(s)	768
AfiI	CCNNNNNNNGG	5 cut(s)	205, 405, 643, 797, 798
AflIII	ACRYGT	1 cut(s)	79
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	109, 494, 584, 710, 980
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	695
AluBI	AGCT	6 cut(s)	25, 211, 343, 375, 775, 859
AluI	AGCT	6 cut(s)	25, 211, 343, 375, 775, 859
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	757
Aor51HI	AGCGCT	1 cut(s)	768
AoxI	GGCC	2 cut(s)	698, 761
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	4 cut(s)	341, 373, 872, 904
AseI	ATTAAT	1 cut(s)	573
AsiGI	ACCGGT	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	2 cut(s)	44, 769
AsuHPI	GGTGA	6 cut(s)	19, 533, 608, 672, 751, 780
AvaI	CYCGRG	1 cut(s)	757
AxyI	CCTNAGG	1 cut(s)	947
BarI	GAAGNNNNNNTAC	4 cut(s)	127, 159, 496, 528
BbsI	GAAGAC	2 cut(s)	408, 882
Bbv12I	GWGCWC	1 cut(s)	868
BccI	CCATC	2 cut(s)	175, 691
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	697
BciVI	GTATCC	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	17, 273
BfoI	RGCGCY	1 cut(s)	770
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	2 cut(s)	6, 306
BlsI	GCNGC	2 cut(s)	7, 307
Bme1390I	CCNGG	1 cut(s)	697
BmeT110I	CYCGRG	1 cut(s)	757
BmgBI	CACGTC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	4 cut(s)	233, 373, 686, 794
BpiI	GAAGAC	2 cut(s)	408, 882
BpmI	CTGGAG	2 cut(s)	233, 852
BpuEI	CTTGAG	2 cut(s)	778, 791
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 405, 643, 797, 798
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	6 cut(s)	239, 687, 701, 852, 894, 973
Bse21I	CCTNAGG	1 cut(s)	947
BseBI	CCWGG	1 cut(s)	697
BseGI	GGATG	2 cut(s)	454, 683
BseLI	CCNNNNNNNGG	5 cut(s)	205, 405, 643, 797, 798
BseMII	CTCAG	3 cut(s)	200, 416, 938
BseNI	ACTGG	6 cut(s)	239, 687, 701, 852, 894, 973
BseYI	CCCAGC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	955
BshFI	GGCC	2 cut(s)	700, 763
BshTI	ACCGGT	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	757
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	5 cut(s)	205, 405, 643, 797, 798
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	2 cut(s)	48, 669
BsnI	GGCC	2 cut(s)	700, 763
BsoBI	CYCGRG	1 cut(s)	757
Bsp1286I	GDGCHC	1 cut(s)	868
BspACI	CCGC	2 cut(s)	152, 306
BspANI	GGCC	2 cut(s)	700, 763
BspCNI	CTCAG	3 cut(s)	199, 415, 939
BspFNI	CGCG	1 cut(s)	955
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	6 cut(s)	239, 687, 701, 852, 894, 973
BssAI	RCCGGY	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	3 cut(s)	23, 46, 765
BstDEI	CTNAG	3 cut(s)	186, 402, 947
BstEII	GGTNACC	1 cut(s)	739
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	454, 683
BstFNI	CGCG	1 cut(s)	955
BstH2I	RGCGCY	1 cut(s)	770
BstHHI	GCGC	2 cut(s)	44, 769
BstMAI	GTCTC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	697
BstPI	GGTNACC	1 cut(s)	739
BstSCI	CCNGG	1 cut(s)	695
BstUI	CGCG	1 cut(s)	955
BstV2I	GAAGAC	2 cut(s)	408, 882
Bsu36I	CCTNAGG	1 cut(s)	947
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	700, 763
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	454, 683
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	555, 859
Cac8I	GCNNGC	3 cut(s)	23, 46, 765
CfoI	GCGC	2 cut(s)	44, 769
Cfr10I	RCCGGY	1 cut(s)	605
CseI	GACGC	2 cut(s)	876, 961
Csp6I	GTAC	1 cut(s)	270
CspAI	ACCGGT	1 cut(s)	605
CviAII	CATG	2 cut(s)	352, 643
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	3 cut(s)	186, 402, 947
DraI	TTTAAA	1 cut(s)	532
DraIII	CACNNNGTG	1 cut(s)	550
Eco47III	AGCGCT	1 cut(s)	768
Eco81I	CCTNAGG	1 cut(s)	947
Eco88I	CYCGRG	1 cut(s)	757
Eco91I	GGTNACC	1 cut(s)	739
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	695
FaeI	CATG	2 cut(s)	355, 646
FatI	CATG	2 cut(s)	351, 642
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	6, 306
FokI	GGATG	2 cut(s)	461, 670
Fsp4HI	GCNGC	2 cut(s)	6, 306
FspBI	CTAG	2 cut(s)	17, 273
GlaI	GCGC	2 cut(s)	43, 768
GluI	GCNGC	2 cut(s)	6, 306
GsaI	CCCAGC	1 cut(s)	785
GsuI	CTGGAG	2 cut(s)	233, 852
HaeII	RGCGCY	1 cut(s)	770
HaeIII	GGCC	2 cut(s)	700, 763
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	2 cut(s)	876, 961
HhaI	GCGC	2 cut(s)	44, 769
Hin1II	CATG	2 cut(s)	355, 646
Hin6I	GCGC	2 cut(s)	42, 767
HinP1I	GCGC	2 cut(s)	42, 767
HincII	GTYRAC	1 cut(s)	233
HindII	GTYRAC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	5 cut(s)	173, 259, 556, 810, 827
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	6 cut(s)	19, 533, 608, 672, 751, 780
Hpy166II	GTNNAC	2 cut(s)	233, 541
Hpy188I	TCNGA	5 cut(s)	88, 180, 189, 382, 405
Hpy188III	TCNNGA	6 cut(s)	109, 347, 560, 707, 869, 946
Hpy8I	GTNNAC	2 cut(s)	233, 541
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	6 cut(s)	68, 199, 325, 498, 578, 866
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	79, 370
HpyCH4V	TGCA	3 cut(s)	68, 362, 662
HpyF3I	CTNAG	3 cut(s)	186, 402, 947
HpySE526I	ACGT	2 cut(s)	79, 370
Hsp92II	CATG	2 cut(s)	355, 646
HspAI	GCGC	2 cut(s)	42, 767
LmnI	GCTCC	2 cut(s)	208, 871
LweI	GCATC	4 cut(s)	233, 373, 686, 794
MaeI	CTAG	2 cut(s)	17, 273
MaeII	ACGT	2 cut(s)	79, 370
MaeIII	GTNAC	3 cut(s)	241, 626, 739
MboII	GAAGA	2 cut(s)	408, 882
MhlI	GDGCHC	1 cut(s)	868
MluCI	AATT	6 cut(s)	126, 288, 391, 410, 570, 579
MlyI	GAGTC	4 cut(s)	167, 268, 550, 836
MmeI	TCCRAC	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	4 cut(s)	156, 531, 573, 930
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	697
Mva1269I	GAATGC	2 cut(s)	48, 669
MvaI	CCWGG	1 cut(s)	697
MvnI	CGCG	1 cut(s)	955
NlaIII	CATG	2 cut(s)	355, 646
NmuCI	GTSAC	2 cut(s)	626, 739
PaeR7I	CTCGAG	1 cut(s)	757
PctI	GAATGC	2 cut(s)	48, 669
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	810
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	7, 307
PleI	GAGTC	4 cut(s)	167, 267, 550, 835
PpsI	GAGTC	4 cut(s)	167, 267, 550, 835
PshBI	ATTAAT	1 cut(s)	573
PsiI	TTATAA	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	695
PspEI	GGTNACC	1 cut(s)	739
PspFI	CCCAGC	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	695
PspXI	VCTCGAGB	1 cut(s)	757
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	156, 531, 573, 930
SatI	GCNGC	2 cut(s)	6, 306
SchI	GAGTC	4 cut(s)	167, 268, 550, 836
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	868
SfaNI	GCATC	4 cut(s)	233, 373, 686, 794
Sfr274I	CTCGAG	1 cut(s)	757
SlaI	CTCGAG	1 cut(s)	757
SmlI	CTYRAG	3 cut(s)	757, 770, 793
SmoI	CTYRAG	3 cut(s)	757, 770, 793
Sse9I	AATT	6 cut(s)	126, 288, 391, 410, 570, 579
SsiI	CCGC	2 cut(s)	152, 306
SspMI	CTAG	2 cut(s)	17, 273
StyD4I	CCNGG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	82, 373
TaqI	TCGA	3 cut(s)	232, 262, 758
TasI	AATT	6 cut(s)	126, 288, 391, 410, 570, 579
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	810
Tru1I	TTAA	4 cut(s)	156, 531, 573, 930
Tru9I	TTAA	4 cut(s)	156, 531, 573, 930
TscAI	CASTG	2 cut(s)	555, 859
TseFI	GTSAC	2 cut(s)	626, 739
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	626, 739
TspDTI	ATGAA	2 cut(s)	206, 465
TspGWI	ACGGA	2 cut(s)	217, 524
TspRI	CASTG	2 cut(s)	555, 859
VspI	ATTAAT	1 cut(s)	573
XagI	CCTNNNNNAGG	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	2 cut(s)	17, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.