Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004665

Physical Location & Seq

Genomic Coordinates Forward (+)

53214354 .. 53220781

Gene Structure 6428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTCAGATGAACAAAATACGGCAGGAGCTGCAGTCATATTCGTCAAGTGGACCAATTACAATTGTAACTGGGAGTCGAACAGGTGCTAGCAGATATGGTATAATTATTGTTGTAGTAGTGGCAGGATATGGCTACTTTTGTTGGAAGGGGTGGAAACTTCCTGATATGATGTTTGCAACAAGACGTAGCTTAGCTGATGCTGGCAAGTCTTTTTCTAAACAGATTGACGGTGTCTTTTCATCGATTTCAGTCACCAGGCGACAATTATCTTCAAACTTGGATGGTGTGGACCGTAATTTAGCTGAGAGTATTGAAACTACTGTTAGGACACAACAGGAGGTTATTGAACTACAAGGAAAAACAGATTCCATCAGCACGGATTTTAGAAAAGTTCAACATGCAGTGCTGACTCTGGAAACTAAGATTAACAGAATAGAAGGCAAGCAGGATTCAACTAATGACGGAGTGTGGAGGTTGTGTGACTATGCCAAGAGATTGGAAAATAGCAGAGCCACAGAACGTATTCAGGCATCACCGTCCAACTCTTCTAGGCAACCTCTTGAACTACCGCCAGCCTCACCCTCATCTTTGGTGACACCACCGAAGTCCTCAAGGCCAGCACTCGAGCTACCCCCAGCATCACCCTCAAGAACTGGCTCTTTGCCTCATGTTTTAGAATCTGAGCCACTTTGCTTGGGTTCCAATGGAATTCAGGAGAATAATGGAATTTCAGATGTGTTTGACCCATCAGCTTCGGAAAGCACAAGCAATGGAGCTTCCAGTTCTGGTCGATTTGGGTTTAAGTACCCAACCTCTAATACTTCAACAATCCTAAGGACGCGAAGTGCTACAGTTGGAATGCTGCAACAGAATCGATCAGCCAGTAGACAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

299

Amino Acids

32.5

Weight (kDa)

9.54

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1664	PF07889	31 - 150	5e-38	Protein of unknown function (DUF1664)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24265 AT1G24265 AT1G24265 AT1G24267 AT1G24267
fragaria_vesca	FvH4_4g23490 FvH4_4g23490
malus_domestica	MD13G1122000.v1.1 MD16G1122300.v1.1
prunus_persica	Prupe.1G223300_v2.0.a1
pyrus_communis	pycom13g10620 pycom16g10470
rosa_chinensis	RchiOBHm_Chr4g0429881
rosa_laevigata	RLG00000007029 RLG00000007031 RLG00000007036
rosa_multiflora	Rmu_sc0002225.1_g000009
rosa_roxburghii	Rroxscaffold_5G00371640
rosa_rugosa	Rorug02G0194400 Rorug02G0194500.1 Rorug02G0194600 Rorug04G0110100 Rorug04G0110500 Rorug04G0238700 Rorug06G0144100
rosa_samantha	Rh4AG295100 Rh4BG086200 Rh4BG301500 Rh4CG316800 Rh4DG298700
rosa_wichuraiana	Rw4G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	889
AccII	CGCG	1 cut(s)	844
AciI	CCGC	1 cut(s)	572
AcsI	RAATTY	2 cut(s)	711, 729
AfaI	GTAC	1 cut(s)	809
AgsI	TTSAA	7 cut(s)	276, 317, 350, 398, 456, 566, 828
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	7 cut(s)	31, 192, 197, 305, 631, 755, 779
AluI	AGCT	7 cut(s)	31, 192, 197, 305, 631, 755, 779
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	617
ApeKI	GCWGC	2 cut(s)	31, 865
ApoI	RAATTY	2 cut(s)	711, 729
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	53, 292
AsuHPI	GGTGA	5 cut(s)	247, 528, 573, 607, 636
AsuNHI	GCTAGC	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	53, 292
AxyI	CCTNAGG	1 cut(s)	836
BbvI	GCAGC	2 cut(s)	18, 852
BccI	CCATC	3 cut(s)	278, 380, 757
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	1 cut(s)	259
BfaI	CTAG	2 cut(s)	90, 552
BfmI	CTRYAG	2 cut(s)	32, 852
BisI	GCNGC	2 cut(s)	32, 866
BlpI	GCTNAGC	1 cut(s)	193
BlsI	GCNGC	2 cut(s)	33, 867
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	2 cut(s)	53, 292
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	53, 292
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	3 cut(s)	190, 542, 650
BmtI	GCTAGC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	2 cut(s)	598, 634
Bsa29I	ATCGAT	2 cut(s)	245, 877
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 466, 496
Bse1I	ACTGG	4 cut(s)	76, 661, 783, 885
Bse21I	CCTNAGG	1 cut(s)	836
Bse3DI	GCAATG	1 cut(s)	778
BseBI	CCWGG	1 cut(s)	259
BseCI	ATCGAT	2 cut(s)	245, 877
BseGI	GGATG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	3 cut(s)	20, 297, 675
BseNI	ACTGG	4 cut(s)	76, 661, 783, 885
BseXI	GCAGC	2 cut(s)	18, 852
BseYI	CCCAGC	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	844
BshFI	GGCC	1 cut(s)	619
BshVI	ATCGAT	2 cut(s)	245, 877
BsiHKCI	CYCGRG	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	626
Bsp143I	GATC	1 cut(s)	878
Bsp1720I	GCTNAGC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	1 cut(s)	619
BspCNI	CTCAG	3 cut(s)	19, 298, 676
BspDI	ATCGAT	2 cut(s)	245, 877
BspFNI	CGCG	1 cut(s)	844
BspLI	GGNNCC	1 cut(s)	703
BspMAI	CTGCAG	1 cut(s)	36
BspOI	GCTAGC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	778
BsrI	ACTGG	4 cut(s)	76, 661, 783, 885
BssMI	GATC	1 cut(s)	878
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	6 cut(s)	233, 296, 325, 540, 856, 894
Bst6I	CTCTTC	1 cut(s)	553
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	5 cut(s)	91, 205, 446, 576, 621
BstDEI	CTNAG	6 cut(s)	6, 193, 306, 423, 684, 836
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	844
BstKTI	GATC	1 cut(s)	881
BstMBI	GATC	1 cut(s)	878
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	2 cut(s)	32, 852
BstUI	CGCG	1 cut(s)	844
BstV1I	GCAGC	2 cut(s)	18, 852
BstXI	CCANNNNNNTGG	1 cut(s)	499
Bsu15I	ATCGAT	2 cut(s)	245, 877
Bsu36I	CCTNAGG	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	619
BsuTUI	ATCGAT	2 cut(s)	245, 877
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	5 cut(s)	91, 205, 446, 576, 621
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	53, 292
ClaI	ATCGAT	2 cut(s)	245, 877
CseI	GACGC	1 cut(s)	850
Csp6I	GTAC	1 cut(s)	808
CspCI	CAANNNNNGTGG	2 cut(s)	678, 713
CviAII	CATG	2 cut(s)	401, 671
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	6 cut(s)	6, 193, 306, 423, 684, 836
DpnI	GATC	1 cut(s)	880
DpnII	GATC	1 cut(s)	878
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	53, 292
Eco81I	CCTNAGG	1 cut(s)	836
Eco88I	CYCGRG	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	711
EcoRII	CCWGG	1 cut(s)	257
FaeI	CATG	2 cut(s)	404, 674
FaiI	YATR	8 cut(s)	40, 99, 104, 132, 170, 402, 489, 672
FatI	CATG	2 cut(s)	400, 670
FblI	GTMKAC	1 cut(s)	889
Fnu4HI	GCNGC	2 cut(s)	32, 866
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	32, 866
FspBI	CTAG	2 cut(s)	90, 552
GluI	GCNGC	2 cut(s)	32, 866
GsaI	CCCAGC	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	619
HgaI	GACGC	1 cut(s)	850
Hin1II	CATG	2 cut(s)	404, 674
HinfI	GANTC	6 cut(s)	76, 368, 412, 452, 680, 874
HphI	GGTGA	5 cut(s)	247, 528, 573, 607, 636
Hpy166II	GTNNAC	3 cut(s)	53, 292, 890
Hpy188I	TCNGA	4 cut(s)	9, 685, 736, 760
Hpy188III	TCNNGA	6 cut(s)	164, 416, 563, 651, 716, 897
Hpy8I	GTNNAC	3 cut(s)	53, 292, 890
HpyAV	CCTTC	2 cut(s)	142, 434
HpyCH4III	ACNGT	6 cut(s)	233, 296, 325, 540, 856, 894
HpyCH4IV	ACGT	2 cut(s)	187, 523
HpyCH4V	TGCA	4 cut(s)	34, 179, 404, 868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	6 cut(s)	6, 193, 306, 423, 684, 836
HpySE526I	ACGT	2 cut(s)	187, 523
Hsp92II	CATG	2 cut(s)	404, 674
Kzo9I	GATC	1 cut(s)	878
LmnI	GCTCC	2 cut(s)	28, 776
Lsp1109I	GCAGC	2 cut(s)	18, 852
LweI	GCATC	3 cut(s)	190, 542, 650
MaeI	CTAG	2 cut(s)	90, 552
MaeII	ACGT	2 cut(s)	187, 523
MaeIII	GTNAC	4 cut(s)	67, 253, 482, 595
MalI	GATC	1 cut(s)	880
MboI	GATC	1 cut(s)	878
MboII	GAAGA	2 cut(s)	264, 540
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	7 cut(s)	57, 63, 105, 266, 298, 711, 729
MlyI	GAGTC	2 cut(s)	85, 406
MmeI	TCCRAC	3 cut(s)	125, 567, 838
MnlI	CCTC	9 cut(s)	334, 468, 570, 589, 595, 622, 658, 678, 826
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	429, 804
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	844
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	878
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	404, 674
NlaIV	GGNNCC	1 cut(s)	703
NmuCI	GTSAC	3 cut(s)	253, 482, 595
NspI	RCATGY	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	626
PctI	GAATGC	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	368, 452, 680, 874
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	33, 867
PleI	GAGTC	2 cut(s)	84, 406
PpsI	GAGTC	2 cut(s)	84, 406
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	2 cut(s)	53, 292
PspXI	VCTCGAGB	1 cut(s)	626
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SaqAI	TTAA	2 cut(s)	429, 804
SatI	GCNGC	2 cut(s)	32, 866
Sau3AI	GATC	1 cut(s)	878
Sau96I	GGNCC	2 cut(s)	53, 292
SchI	GAGTC	2 cut(s)	85, 406
ScrFI	CCNGG	1 cut(s)	259
SfaNI	GCATC	3 cut(s)	190, 542, 650
SfcI	CTRYAG	2 cut(s)	32, 852
Sfr274I	CTCGAG	1 cut(s)	626
SinI	GGWCC	2 cut(s)	53, 292
SlaI	CTCGAG	1 cut(s)	626
SmlI	CTYRAG	3 cut(s)	613, 626, 649
SmoI	CTYRAG	3 cut(s)	613, 626, 649
Sse9I	AATT	7 cut(s)	57, 63, 105, 266, 298, 711, 729
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	2 cut(s)	90, 552
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	6 cut(s)	233, 296, 325, 540, 856, 894
TaiI	ACGT	2 cut(s)	190, 526
TaqI	TCGA	5 cut(s)	79, 245, 627, 793, 877
TasI	AATT	7 cut(s)	57, 63, 105, 266, 298, 711, 729
TfiI	GAWTC	4 cut(s)	368, 452, 680, 874
Tru1I	TTAA	2 cut(s)	429, 804
Tru9I	TTAA	2 cut(s)	429, 804
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	3 cut(s)	253, 482, 595
TseI	GCWGC	2 cut(s)	31, 865
Tsp45I	GTSAC	3 cut(s)	253, 482, 595
TspDTI	ATGAA	2 cut(s)	26, 231
TspGWI	ACGGA	2 cut(s)	395, 480
TspRI	CASTG	1 cut(s)	411
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	53, 292
XapI	RAATTY	2 cut(s)	711, 729
XceI	RCATGY	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	889
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	90, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.