Rh4BG086200

Protein of unknown function (DUF1664)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
14809205 .. 14832223
23019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG086200.1

Sequence Viewer

Length: 939 bp
ATGGCGATGAACAAAATACGGCAGGAGCTGCAGTCATATTCGTCAAATGGACCAATTACAATTGTGACTGGGAGTCGAACAGGTGCTAGCAGATATGGTATAATTATTGTTGCAGTAGTGGCAGGATATGGCTACTTTTGGTGGAAGGGGTGGAAACTTCCTGATATGATGTTTGCAACAAGACGTAGCTTAGCTGATGCTGGCAAGTCTTTTTCTAAACATTCTGACGGTGTCTTTTCATCGATTTCAGTCACCAGGCGACAATTATCTTCAAACTTGGATGGTGTGGACTGTAATTTAGCTGAGAGTATTGAAACTACTGTTAGGACACAACAGGAGGTTATTGAACTACAAGGAAAAACAGATTCCATCAGCACGAATTTTAGAAAAGTTCAACATGCAGTGCTGACTCTGGAAACTAAGATTAACATAATAGAAGGCAAGCAGGATTCAACTAATGACGGACTGTGGAGGTTGTGTGACTATGCCAAGAGATTGGAAAATAGCAGAGCCACAGAACGTATTCAGAATGAGAGAGCAGAATCAGAGCAGAAGAAAGCAGAAAATTTGATAGCGCAGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTTAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCTGGGGGCCCGTAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATACTGGAATTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

312

Amino Acids

35.26

Weight (kDa)

7.64

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 30 - 149 6.7e-37 Protein of unknown function (DUF1664)
EDR1_CTR1_ARMC3_pept PF14381 269 - 308 1.5e-09 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 710
AcsI RAATTY 3 cut(s) 379, 565, 749
AfaI GTAC 2 cut(s) 828, 886
AhdI GACNNNNNGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 1 cut(s) 804
ApaI GGGCCC 1 cut(s) 808
ApeKI GCWGC 2 cut(s) 28, 796
ApoI RAATTY 3 cut(s) 379, 565, 749
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 577, 727
AspS9I GGNCC 3 cut(s) 50, 804, 805
AsuHPI GGTGA 1 cut(s) 244
AsuNHI GCTAGC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 808
BbvI GCAGC 2 cut(s) 15, 783
BccI CCATC 3 cut(s) 275, 377, 887
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 256
BfaI CTAG 2 cut(s) 87, 830
BfmI CTRYAG 1 cut(s) 29
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 2 cut(s) 29, 797
BlpI GCTNAGC 1 cut(s) 190
BlsI GCNGC 2 cut(s) 30, 798
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 50
BmeRI GACNNNNNGTC 1 cut(s) 72
BmgT120I GGNCC 3 cut(s) 50, 804, 805
BmiI GGNNCC 2 cut(s) 805, 806
BmrFI CCNGG 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 187
BmtI GCTAGC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 190
Bsa29I ATCGAT 1 cut(s) 242
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 463, 493
Bse1I ACTGG 2 cut(s) 73, 928
BseBI CCWGG 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 242
BseGI GGATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 294, 630
BseNI ACTGG 2 cut(s) 73, 928
BseRI GAGGAG 1 cut(s) 793
BseSI GKGCMC 1 cut(s) 808
BseXI GCAGC 2 cut(s) 15, 783
BseYI CCCAGC 1 cut(s) 799
BshFI GGCC 1 cut(s) 806
BshVI ATCGAT 1 cut(s) 242
BsnI GGCC 1 cut(s) 806
Bsp120I GGGCCC 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 808
Bsp143I GATC 1 cut(s) 739
Bsp1720I GCTNAGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 806
BspCNI CTCAG 2 cut(s) 295, 629
BspDI ATCGAT 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 805, 806
BspMAI CTGCAG 1 cut(s) 33
BspOI GCTAGC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 73, 928
BssMI GATC 1 cut(s) 739
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 4 cut(s) 230, 293, 322, 468
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 4 cut(s) 88, 202, 443, 579
BstDEI CTNAG 4 cut(s) 190, 303, 420, 616
BstF5I GGATG 1 cut(s) 286
BstHHI GCGC 2 cut(s) 577, 727
BstKTI GATC 1 cut(s) 742
BstMBI GATC 1 cut(s) 739
BstMWI GCNNNNNNNGC 3 cut(s) 28, 119, 656
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 808
BstV1I GCAGC 2 cut(s) 15, 783
BstXI CCANNNNNNTGG 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 242
BsuRI GGCC 1 cut(s) 806
BsuTUI ATCGAT 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 2 cut(s) 408, 666
BtsIMutI CAGTG 3 cut(s) 408, 666, 761
Cac8I GCNNGC 4 cut(s) 88, 202, 443, 579
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 2 cut(s) 577, 727
Cfr13I GGNCC 3 cut(s) 50, 804, 805
ClaI ATCGAT 1 cut(s) 242
Csp6I GTAC 2 cut(s) 827, 885
CviAII CATG 2 cut(s) 398, 852
CviQI GTAC 2 cut(s) 827, 885
DdeI CTNAG 4 cut(s) 190, 303, 420, 616
DpnI GATC 1 cut(s) 741
DpnII GATC 1 cut(s) 739
DriI GACNNNNNGTC 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 804
EcoRII CCWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 808
FaeI CATG 2 cut(s) 401, 855
FatI CATG 2 cut(s) 397, 851
Fnu4HI GCNGC 2 cut(s) 29, 797
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 2 cut(s) 29, 797
FspBI CTAG 2 cut(s) 87, 830
GlaI GCGC 2 cut(s) 576, 726
GluI GCNGC 2 cut(s) 29, 797
GsaI CCCAGC 1 cut(s) 803
HaeIII GGCC 1 cut(s) 806
HhaI GCGC 2 cut(s) 577, 727
Hin1II CATG 2 cut(s) 401, 855
Hin6I GCGC 2 cut(s) 575, 725
HinP1I GCGC 2 cut(s) 575, 725
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 5 cut(s) 73, 365, 409, 449, 542
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 289, 904
Hpy188I TCNGA 4 cut(s) 226, 528, 547, 619
Hpy188III TCNNGA 2 cut(s) 161, 413
Hpy8I GTNNAC 2 cut(s) 289, 904
HpyAV CCTTC 4 cut(s) 139, 431, 715, 927
HpyCH4III ACNGT 4 cut(s) 230, 293, 322, 468
HpyCH4IV ACGT 3 cut(s) 184, 520, 710
HpyCH4V TGCA 4 cut(s) 31, 113, 176, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 119, 656
HpyF3I CTNAG 4 cut(s) 190, 303, 420, 616
HpySE526I ACGT 3 cut(s) 184, 520, 710
Hsp92II CATG 2 cut(s) 401, 855
HspAI GCGC 2 cut(s) 575, 725
Kzo9I GATC 1 cut(s) 739
LmnI GCTCC 5 cut(s) 25, 648, 730, 780, 896
Lsp1109I GCAGC 2 cut(s) 15, 783
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 87, 830
MaeII ACGT 3 cut(s) 184, 520, 710
MaeIII GTNAC 3 cut(s) 64, 250, 479
MalI GATC 1 cut(s) 741
MboI GATC 1 cut(s) 739
MboII GAAGA 5 cut(s) 261, 565, 697, 700, 839
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 808
MlyI GAGTC 2 cut(s) 82, 403
MnlI CCTC 5 cut(s) 331, 465, 661, 771, 817
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 5 cut(s) 426, 693, 713, 818, 912
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 28, 119, 656
NdeII GATC 1 cut(s) 739
NheI GCTAGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 401, 855
NlaIV GGNNCC 2 cut(s) 805, 806
NmuCI GTSAC 3 cut(s) 64, 250, 479
NspI RCATGY 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 365, 449, 542
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 30, 798
PleI GAGTC 2 cut(s) 81, 403
PpsI GAGTC 2 cut(s) 81, 403
Psp1406I AACGTT 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 799
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 805, 806
PspOMI GGGCCC 1 cut(s) 804
PspPI GGNCC 3 cut(s) 50, 804, 805
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 2 cut(s) 828, 886
RsaNI GTAC 2 cut(s) 827, 885
SaqAI TTAA 5 cut(s) 426, 693, 713, 818, 912
SatI GCNGC 2 cut(s) 29, 797
Sau3AI GATC 1 cut(s) 739
Sau96I GGNCC 3 cut(s) 50, 804, 805
SchI GAGTC 2 cut(s) 82, 403
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 808
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 50
SspMI CTAG 2 cut(s) 87, 830
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 4 cut(s) 230, 293, 322, 468
TaiI ACGT 3 cut(s) 187, 523, 713
TaqI TCGA 2 cut(s) 76, 242
TfiI GAWTC 3 cut(s) 365, 449, 542
Tru1I TTAA 5 cut(s) 426, 693, 713, 818, 912
Tru9I TTAA 5 cut(s) 426, 693, 713, 818, 912
TscAI CASTG 3 cut(s) 408, 666, 768
TseFI GTSAC 3 cut(s) 64, 250, 479
TseI GCWGC 2 cut(s) 28, 796
Tsp45I GTSAC 3 cut(s) 64, 250, 479
TspDTI ATGAA 2 cut(s) 23, 228
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 3 cut(s) 408, 666, 768
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 3 cut(s) 379, 565, 749
XceI RCATGY 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 2 cut(s) 87, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.