pycom13g10620

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004665
Physical Location & Seq
Reverse (-)
7116929 .. 7122304
5376 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1053 bp
ATGGCTGCTCTCCCTCTCGGCAAGCTCACCATCCTCGTGGGCGCAGGCATTCTTGGTTCAGTTCTTGCAAAAGAAGGACGTGTATCTGATGTTGTCTCTGGTGCTTTCAAGATTGCATGGAAACAAATTATACGAAGTGATAGTACTCCGGCGGCTAAGAAACCACACAACGACCATCTGATGGCTCAGATGAACAACCTGCGGAAGGAGCTGGAGATAATAGCATCAAGTCCTCGGCAACCAGTTACAATTATAACTATGGGTCGAACAGGTACTAGCAAATATGGTATAATTATTGTTGTAGTAGCGGCGGGATATGGCTACTTGTGGTGGAAGGGGTGGAAGCTTCCTGATATGATGTTTGCAACAAGACGTAGCTTATCCGATGCTTCCAATTCTGTTGCTAAACAGCTTGAGAGTCTGTTTACATCAATTTCGAGCACTCGGAGGAAATTATCTTCACAACTTGATCATGTGGAATGTAGTTTGGATGAAAGTATTGAAAATACTGCTAGGACGCAACAGGAGGTTATCACACTACAAGGAAGGACGGATACCATTAGCAGAGATTTTAAAAAAGTTCATCACGCAGTGCTGACTCTGGAAACAAAAATTAATAGAATCGAAGGGAAGCAGGGCGAGACTGCTGATGGAGTCTGGAAGTTGTGTGACTATGCCCTGAACATGGAAAAGGGCAGAAACACAGAACGCATTCAGGCGTCACCCTCCAGCTTTTCCAGGTCAGTTCTTGAACTACCACCAGACTCCCCCTCGTCTTTGGTGACACCACTGAAGTCCCCGAGGCCAGCACTTGAGCTACCCCCAACGTCACCCTCAAGGGAGAATAGTGGAATCTTGGAAGTGGTTGAGTCCTCAAATCGTGGTGAGGCTTCCAATGGGATTCGTGCCCAAGAAGGCACAAACAAAGCGGCTTCCAGTTCTGGTTGGTTTGGGTTCGGGTTTCCAACCTTCAATAGTTCGGCGCTCCAGAGGACGCGAAGTGCTACAACTGGAATGGTGCAACAGAAACGATCAACCAGTCAACCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

351

Amino Acids

38.13

Weight (kDa)

9.76

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 92 - 212 1.1e-41 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 207
AccB7I CCANNNNNTGG 1 cut(s) 181
AccII CGCG 1 cut(s) 997
AciI CCGC 5 cut(s) 152, 202, 308, 311, 929
AcuI CTGAAG 1 cut(s) 812
AcyI GRCGYC 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 592
AfaI GTAC 2 cut(s) 145, 274
AfiI CCNNNNNNNGG 3 cut(s) 181, 205, 685
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 4 cut(s) 109, 503, 752, 973
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 1 cut(s) 737
AluBI AGCT 7 cut(s) 25, 211, 346, 378, 412, 732, 817
AluI AGCT 7 cut(s) 25, 211, 346, 378, 412, 732, 817
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 2 cut(s) 100, 635
Ama87I CYCGRG 1 cut(s) 799
AoxI GGCC 1 cut(s) 803
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 2 cut(s) 44, 985
AsuHPI GGTGA 5 cut(s) 19, 714, 793, 822, 896
AvaI CYCGRG 1 cut(s) 799
BaeGI GKGCMC 1 cut(s) 910
BarI GAAGNNNNNNTAC 4 cut(s) 127, 159, 538, 570
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 443
BccI CCATC 4 cut(s) 38, 175, 183, 644
BciT130I CCWGG 1 cut(s) 739
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 2 cut(s) 100, 635
BfaI CTAG 2 cut(s) 276, 513
BfoI RGCGCY 1 cut(s) 986
BfuAI ACCTGC 1 cut(s) 207
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 4 cut(s) 6, 153, 309, 930
BlsI GCNGC 4 cut(s) 7, 154, 310, 931
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 739
BmeT110I CYCGRG 1 cut(s) 799
BmgBI CACGTC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 2 cut(s) 233, 376
BpmI CTGGAG 3 cut(s) 233, 712, 971
BpuEI CTTGAG 3 cut(s) 434, 820, 833
BsaHI GRCGYC 1 cut(s) 719
BsaJI CCNNGG 2 cut(s) 233, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 205, 685
Bse1I ACTGG 4 cut(s) 242, 936, 1015, 1038
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 2 cut(s) 233, 800
BseGI GGATG 2 cut(s) 30, 496
BseLI CCNNNNNNNGG 3 cut(s) 181, 205, 685
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 4 cut(s) 242, 936, 1015, 1038
BseSI GKGCMC 1 cut(s) 910
Bsh1236I CGCG 1 cut(s) 997
BshFI GGCC 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 799
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 781
BslI CCNNNNNNNGG 3 cut(s) 181, 205, 685
BsmAI GTCTC 2 cut(s) 100, 635
BsmFI GGGAC 1 cut(s) 781
BsmI GAATGC 2 cut(s) 48, 711
BsnI GGCC 1 cut(s) 805
BsoBI CYCGRG 1 cut(s) 799
Bsp1286I GDGCHC 2 cut(s) 443, 910
Bsp143I GATC 2 cut(s) 469, 1031
BspACI CCGC 5 cut(s) 152, 202, 308, 311, 929
BspANI GGCC 1 cut(s) 805
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 997
BspMI ACCTGC 1 cut(s) 207
BsrI ACTGG 4 cut(s) 242, 936, 1015, 1038
BssECI CCNNGG 2 cut(s) 233, 800
BssMI GATC 2 cut(s) 469, 1031
BssNI GRCGYC 1 cut(s) 719
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 739
BstACI GRCGYC 1 cut(s) 719
BstC8I GCNNGC 3 cut(s) 23, 46, 807
BstDEI CTNAG 2 cut(s) 156, 186
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 30, 496
BstFNI CGCG 1 cut(s) 997
BstH2I RGCGCY 1 cut(s) 986
BstHHI GCGC 2 cut(s) 44, 985
BstKTI GATC 2 cut(s) 472, 1034
BstMAI GTCTC 2 cut(s) 100, 635
BstMBI GATC 2 cut(s) 469, 1031
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 737
BstSLI GKGCMC 1 cut(s) 910
BstUI CGCG 1 cut(s) 997
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 1 cut(s) 805
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 2 cut(s) 30, 496
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 597, 788
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 3 cut(s) 23, 46, 807
CfoI GCGC 2 cut(s) 44, 985
CseI GACGC 3 cut(s) 526, 708, 1003
Csp6I GTAC 2 cut(s) 144, 273
CviAII CATG 3 cut(s) 117, 473, 685
CviQI GTAC 2 cut(s) 144, 273
DdeI CTNAG 2 cut(s) 156, 186
DpnI GATC 2 cut(s) 471, 1033
DpnII GATC 2 cut(s) 469, 1031
DraI TTTAAA 1 cut(s) 574
DraIII CACNNNGTG 1 cut(s) 592
Eco57I CTGAAG 1 cut(s) 812
Eco88I CYCGRG 1 cut(s) 799
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 737
FaeI CATG 3 cut(s) 120, 476, 688
FaqI GGGAC 1 cut(s) 781
FatI CATG 3 cut(s) 116, 472, 684
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 4 cut(s) 6, 153, 309, 930
FokI GGATG 2 cut(s) 17, 503
Fsp4HI GCNGC 4 cut(s) 6, 153, 309, 930
FspBI CTAG 2 cut(s) 276, 513
GlaI GCGC 2 cut(s) 43, 984
GluI GCNGC 4 cut(s) 6, 153, 309, 930
GsuI CTGGAG 3 cut(s) 233, 712, 971
HaeII RGCGCY 1 cut(s) 986
HaeIII GGCC 1 cut(s) 805
HapII CCGG 1 cut(s) 149
HgaI GACGC 3 cut(s) 526, 708, 1003
HhaI GCGC 2 cut(s) 44, 985
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 3 cut(s) 120, 476, 688
Hin6I GCGC 2 cut(s) 42, 983
HinP1I GCGC 2 cut(s) 42, 983
HincII GTYRAC 1 cut(s) 1043
HindII GTYRAC 1 cut(s) 1043
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 8 cut(s) 418, 598, 621, 654, 764, 852, 869, 901
HpaII CCGG 1 cut(s) 149
HphI GGTGA 5 cut(s) 19, 714, 793, 822, 896
Hpy166II GTNNAC 2 cut(s) 426, 1043
Hpy188I TCNGA 5 cut(s) 88, 180, 189, 385, 447
Hpy188III TCNNGA 6 cut(s) 109, 350, 602, 658, 749, 988
Hpy8I GTNNAC 2 cut(s) 426, 1043
HpyAV CCTTC 7 cut(s) 68, 199, 328, 540, 620, 908, 979
HpyCH4IV ACGT 3 cut(s) 79, 373, 827
HpyCH4V TGCA 4 cut(s) 68, 116, 365, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 156, 186
HpySE526I ACGT 3 cut(s) 79, 373, 827
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 3 cut(s) 120, 476, 688
HspAI GCGC 2 cut(s) 42, 983
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 2 cut(s) 469, 1031
LmnI GCTCC 2 cut(s) 208, 990
LweI GCATC 2 cut(s) 233, 376
MaeI CTAG 2 cut(s) 276, 513
MaeII ACGT 3 cut(s) 79, 373, 827
MaeIII GTNAC 5 cut(s) 244, 668, 720, 781, 828
MalI GATC 2 cut(s) 471, 1033
MboI GATC 2 cut(s) 469, 1031
MboII GAAGA 1 cut(s) 450
MhlI GDGCHC 2 cut(s) 443, 910
MluCI AATT 7 cut(s) 126, 249, 291, 394, 432, 452, 612
MlyI GAGTC 5 cut(s) 427, 592, 663, 758, 878
MmeI TCCRAC 1 cut(s) 989
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 2 cut(s) 573, 615
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 739
Mva1269I GAATGC 2 cut(s) 48, 711
MvaI CCWGG 1 cut(s) 739
MvnI CGCG 1 cut(s) 997
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 2 cut(s) 469, 1031
NlaIII CATG 3 cut(s) 120, 476, 688
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 4 cut(s) 668, 720, 781, 828
PctI GAATGC 2 cut(s) 48, 711
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 621, 852, 901
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 4 cut(s) 7, 154, 310, 931
PleI GAGTC 5 cut(s) 426, 592, 662, 758, 877
PpsI GAGTC 5 cut(s) 426, 592, 662, 758, 877
PshBI ATTAAT 1 cut(s) 615
PsiI TTATAA 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
RsaI GTAC 2 cut(s) 145, 274
RsaNI GTAC 2 cut(s) 144, 273
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 2 cut(s) 573, 615
SatI GCNGC 4 cut(s) 6, 153, 309, 930
Sau3AI GATC 2 cut(s) 469, 1031
ScaI AGTACT 1 cut(s) 145
SchI GAGTC 5 cut(s) 427, 592, 663, 758, 878
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 2 cut(s) 443, 910
SfaNI GCATC 2 cut(s) 233, 376
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 3 cut(s) 413, 812, 835
SmoI CTYRAG 3 cut(s) 413, 812, 835
Sse9I AATT 7 cut(s) 126, 249, 291, 394, 432, 452, 612
SsiI CCGC 5 cut(s) 152, 202, 308, 311, 929
SspMI CTAG 2 cut(s) 276, 513
StyD4I CCNGG 1 cut(s) 737
TaiI ACGT 3 cut(s) 82, 376, 830
TaqI TCGA 3 cut(s) 265, 437, 624
TasI AATT 7 cut(s) 126, 249, 291, 394, 432, 452, 612
TatI WGTACW 1 cut(s) 143
TauI GCSGC 3 cut(s) 155, 311, 932
TfiI GAWTC 3 cut(s) 621, 852, 901
Tru1I TTAA 2 cut(s) 573, 615
Tru9I TTAA 2 cut(s) 573, 615
TscAI CASTG 2 cut(s) 597, 795
TseFI GTSAC 4 cut(s) 668, 720, 781, 828
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 4 cut(s) 668, 720, 781, 828
TspDTI ATGAA 3 cut(s) 206, 507, 572
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 2 cut(s) 597, 795
Van91I CCANNNNNTGG 1 cut(s) 181
VspI ATTAAT 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 2 cut(s) 276, 513
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.