Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9388042 .. 9391692

Gene Structure 3651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAAACCTTTGAGCTTTCTCAGTAAGGTGCATGACAAGAATCAACCTGAGGATCTAGAGACAACTTATATAACTCATGCTAAGGAGCCTGATGCGGATATTGACCTCAGAGAAGTATATTTTCTTATCATGCATTTTCTGTCAGCTGGCCCATGCCATAGAACTTGTGGACAGTTGTGGAACGAACTTCTTGAACATCAACTTTTACCTAGAAGATATCATGCTTGGTATTCAAGGAAGGGCATGCACAGCGAGGATGAAAATGATGATGGGAAGTCATTTCCTTTAAATTACAATATGCTGGTGCACAGGTATCCTCACATTGAAAATGACCATTTGGTAAAGCTTTTGAAGCAATTGATTTCAAGTGCAGCCCCACCATCAAGAGGTACGAGTGGTGGAAATGCTCCAAATGCTGCTGATGTACCTACTCTCTTGGGACGTGGTTCATTTTCGCTTCTGACCTATGAAAGGGATCAAGTACACAATGAAATGAAGCCCCCTCCTGCTCACATGCGTTGGCCTCACATGAAAGCTCATCAGGTTCAAGGGCTAAGGTTGAGAGAAATTGGGGGAGGTTTCACCCGACATCACCGTGCACCGTCTATTCGTGCTGCATCTTATGCCATTGCAAAGCCCTCAACCATGTTTGAGAAGATGCAATTTACCAAGAGGATAAGGGGCCATCGAAACTCTGTCTACTGTGCAACATTTGATTGCTCAGGCAGGTATGTTATTACTGGTTCAGACGATCGCCTAGTGAAGATCTGGTTAATGGAAACTGCATTTTGCTTAGCCAGCTGCCGTGGACATGAAGGAGATATCACGGATCTGGCTGTGAGTTCCAATAATGCTTTGGTGGCATCCTCCTCAAATGACCATATGATTCGAGTATGGCGCTTGCCAGACGGACTGCCAATTTCAGTATTGCGAGGACATACTGCAGCTGTTACTGCCATTACATTTAATCCCAGGCCAGGCTCTATGTACCACCTTCTATCTTCATCTGATGATGGAACTTGTAGGATATGGGATGCCAGGAGTTCTCAAGTGAGTCCAAGGATATACATTCCAAGACCTTCAGATGCTGTAGTTGGGAGAAACAGTGGTCCATCTTCAAGCACTGTCACACAGGACCATCATATCTTCTGTTGTGCATTCAATGCTAATGGAACAGTCTTTGTCACCGGTAGCTCGGACACTCTTGCAAGGGTGTGGACTGCTTCTAAGCCAGGCTCGGATGAGTCGGACCAACCAAATCATGAGATTGATGTGTTATCTGGCCATGAGAATGATGTCAATTATGTACAATTTAGGTTATGGTTGCGCTGGAGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

447

Amino Acids

50.12

Weight (kDa)

8.07

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRWD1_N	PF25437	26 - 123	1.8e-35	BRWD1-like, N-terminal domain
Beta-prop_TEP1_2nd	PF25047	216 - 348	4.9e-13	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	217 - 304	4.5e-19	THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	218 - 344	2.8e-09	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	218 - 351	1.6e-16	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	219 - 352	5.5e-28	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	219 - 305	3.6e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	220 - 350	3.3e-14	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	221 - 348	2.6e-22	WDR3 first beta-propeller domain
WDR55	PF24796	222 - 300	3.7e-06	WDR55
WD40	PF00400	222 - 257	3.3e-08	WD domain, G-beta repeat
WD40_Prp19	PF24814	223 - 324	1.7e-12	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	223 - 300	1e-11	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	228 - 424	4.1e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_SCAP	PF24017	240 - 349	1.4e-09	SCAP Beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	264 - 355	1.3e-08	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	264 - 299	4.2e-08	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	264 - 324	9.7e-06	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	265 - 350	1.1e-11	Prp19 WD40 domain
EIF3I	PF24805	269 - 351	1.3e-06	EIF3I
WD40_WDHD1_1st	PF24817	274 - 355	1.1e-12	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	288 - 351	7.9e-10	THOC3 beta-propeller domain
WD40	PF00400	306 - 345	8.6e-08	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	380 - 438	9.9e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	717
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	3 cut(s)	60, 483, 837
AcoI	YGGCCR	1 cut(s)	1282
AcuI	CTGAAG	1 cut(s)	1065
AfaI	GTAC	5 cut(s)	391, 426, 483, 989, 1308
AfiI	CCNNNNNNNGG	3 cut(s)	386, 471, 977
AgeI	ACCGGT	1 cut(s)	1187
AgsI	TTSAA	8 cut(s)	194, 234, 326, 352, 366, 548, 1119, 1162
AjiI	CACGTC	1 cut(s)	443
AjnI	CCWGG	4 cut(s)	971, 976, 1037, 1231
AluBI	AGCT	7 cut(s)	15, 146, 346, 536, 801, 947, 1194
AluI	AGCT	7 cut(s)	15, 146, 346, 536, 801, 947, 1194
Alw21I	GWGCWC	2 cut(s)	309, 601
Alw26I	GTCTC	1 cut(s)	53
Alw44I	GTGCAC	2 cut(s)	305, 597
AlwI	GGATC	3 cut(s)	60, 483, 837
AlwNI	CAGNNNCTG	1 cut(s)	1088
AoxI	GGCC	5 cut(s)	148, 521, 682, 974, 1282
ApaLI	GTGCAC	2 cut(s)	305, 597
ApeKI	GCWGC	5 cut(s)	371, 416, 614, 801, 944
AsiGI	ACCGGT	1 cut(s)	1187
AspLEI	GCGC	2 cut(s)	900, 1329
AspS9I	GGNCC	5 cut(s)	149, 682, 1109, 1135, 1249
AsuHPI	GGTGA	3 cut(s)	574, 584, 1177
AvaII	GGWCC	3 cut(s)	1109, 1135, 1249
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	2 cut(s)	309, 601
BalI	TGGCCA	1 cut(s)	1284
Bbv12I	GWGCWC	2 cut(s)	309, 601
BbvI	GCAGC	5 cut(s)	383, 403, 601, 788, 956
BccI	CCATC	6 cut(s)	263, 388, 693, 1007, 1120, 1146
BceAI	ACGGC	1 cut(s)	789
BciT130I	CCWGG	4 cut(s)	973, 978, 1039, 1233
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	4 cut(s)	56, 210, 758, 1339
BfmI	CTRYAG	2 cut(s)	942, 1089
BfoI	RGCGCY	1 cut(s)	901
BfuAI	ACCTGC	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	5 cut(s)	372, 417, 615, 802, 945
BlpI	GCTNAGC	1 cut(s)	793
BlsI	GCNGC	5 cut(s)	373, 418, 616, 803, 946
Bme1390I	CCNGG	4 cut(s)	973, 978, 1039, 1233
Bme18I	GGWCC	3 cut(s)	1109, 1135, 1249
BmgBI	CACGTC	1 cut(s)	443
BmgT120I	GGNCC	5 cut(s)	149, 682, 1109, 1135, 1249
BmiI	GGNNCC	2 cut(s)	87, 683
BmrFI	CCNGG	4 cut(s)	973, 978, 1039, 1233
BmsI	GCATC	6 cut(s)	82, 626, 648, 872, 1024, 1075
Bpu10I	CCTNAGC	3 cut(s)	81, 554, 721
Bpu1102I	GCTNAGC	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	1032
BsaJI	CCNNGG	3 cut(s)	805, 971, 1058
BsaWI	WCCGGW	1 cut(s)	1187
BsaXI	ACNNNNNCTCC	2 cut(s)	1090, 1120
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 471, 977
Bse118I	RCCGGY	1 cut(s)	1187
Bse1I	ACTGG	1 cut(s)	745
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	4 cut(s)	973, 978, 1039, 1233
BseDI	CCNNGG	3 cut(s)	805, 971, 1058
BseGI	GGATG	4 cut(s)	262, 863, 1039, 1246
BseLI	CCNNNNNNNGG	3 cut(s)	386, 471, 977
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	34, 39, 121, 735
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	859
BseSI	GKGCMC	2 cut(s)	309, 601
BseXI	GCAGC	5 cut(s)	383, 403, 601, 788, 956
BsgI	GTGCAG	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	754
BshFI	GGCC	5 cut(s)	150, 523, 684, 976, 1284
BshTI	ACCGGT	1 cut(s)	1187
BsiEI	CGRYCG	1 cut(s)	754
BsiHKAI	GWGCWC	2 cut(s)	309, 601
BsiSI	CCGG	1 cut(s)	1188
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	3 cut(s)	386, 471, 977
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	1157
BsnI	GGCC	5 cut(s)	150, 523, 684, 976, 1284
Bsp1286I	GDGCHC	2 cut(s)	309, 601
Bsp1407I	TGTACA	1 cut(s)	1306
Bsp143I	GATC	5 cut(s)	52, 475, 751, 765, 829
Bsp1720I	GCTNAGC	1 cut(s)	793
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	5 cut(s)	150, 523, 684, 976, 1284
BspCNI	CTCAG	4 cut(s)	33, 40, 120, 734
BspHI	TCATGA	1 cut(s)	1261
BspLI	GGNNCC	2 cut(s)	87, 683
BspMAI	CTGCAG	1 cut(s)	946
BspMI	ACCTGC	1 cut(s)	717
BspPI	GGATC	3 cut(s)	60, 483, 837
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	1187
BsrGI	TGTACA	1 cut(s)	1306
BsrI	ACTGG	1 cut(s)	745
BssAI	RCCGGY	1 cut(s)	1187
BssECI	CCNNGG	3 cut(s)	805, 971, 1058
BssMI	GATC	5 cut(s)	52, 475, 751, 765, 829
BssT1I	CCWWGG	1 cut(s)	1058
Bst2UI	CCWGG	4 cut(s)	973, 978, 1039, 1233
Bst4CI	ACNGT	7 cut(s)	174, 596, 603, 704, 1106, 1126, 1177
BstAPI	GCANNNNNTGC	2 cut(s)	623, 1163
BstAUI	TGTACA	1 cut(s)	1306
BstC8I	GCNNGC	4 cut(s)	148, 245, 799, 902
BstDEI	CTNAG	8 cut(s)	20, 48, 81, 107, 554, 721, 793, 1227
BstDSI	CCRYGG	1 cut(s)	805
BstENI	CCTNNNNNAGG	1 cut(s)	469
BstF5I	GGATG	4 cut(s)	262, 863, 1039, 1246
BstH2I	RGCGCY	1 cut(s)	901
BstHHI	GCGC	2 cut(s)	900, 1329
BstKTI	GATC	5 cut(s)	55, 478, 754, 768, 832
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	5 cut(s)	52, 475, 751, 765, 829
BstMCI	CGRYCG	1 cut(s)	754
BstMWI	GCNNNNNNNGC	8 cut(s)	249, 352, 413, 623, 798, 860, 953, 1163
BstNI	CCWGG	4 cut(s)	973, 978, 1039, 1233
BstNSI	RCATGY	2 cut(s)	247, 517
BstSCI	CCNGG	4 cut(s)	971, 976, 1037, 1231
BstSFI	CTRYAG	2 cut(s)	942, 1089
BstSLI	GKGCMC	2 cut(s)	309, 601
BstV1I	GCAGC	5 cut(s)	383, 403, 601, 788, 956
BstX2I	RGATCY	3 cut(s)	52, 765, 829
BstYI	RGATCY	3 cut(s)	52, 765, 829
Bsu36I	CCTNAGG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	150, 523, 684, 976, 1284
BtgI	CCRYGG	1 cut(s)	805
BtrI	CACGTC	1 cut(s)	443
BtsCI	GGATG	4 cut(s)	262, 863, 1039, 1246
BtsIMutI	CAGTG	2 cut(s)	1111, 1122
BveI	ACCTGC	1 cut(s)	717
Cac8I	GCNNGC	4 cut(s)	148, 245, 799, 902
CaiI	CAGNNNCTG	1 cut(s)	1088
CciI	TCATGA	1 cut(s)	1261
CfoI	GCGC	2 cut(s)	900, 1329
Cfr10I	RCCGGY	1 cut(s)	1187
Cfr13I	GGNCC	5 cut(s)	149, 682, 1109, 1135, 1249
Csp6I	GTAC	5 cut(s)	390, 425, 482, 988, 1307
CspAI	ACCGGT	1 cut(s)	1187
CviQI	GTAC	5 cut(s)	390, 425, 482, 988, 1307
DdeI	CTNAG	8 cut(s)	20, 48, 81, 107, 554, 721, 793, 1227
DpnI	GATC	5 cut(s)	54, 477, 753, 767, 831
DpnII	GATC	5 cut(s)	52, 475, 751, 765, 829
DraI	TTTAAA	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	1282
Eco130I	CCWWGG	1 cut(s)	1058
Eco32I	GATATC	2 cut(s)	218, 823
Eco47I	GGWCC	3 cut(s)	1109, 1135, 1249
Eco57I	CTGAAG	1 cut(s)	1065
Eco81I	CCTNAGG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	469
EcoRII	CCWGG	4 cut(s)	971, 976, 1037, 1231
EcoRV	GATATC	2 cut(s)	218, 823
EcoT14I	CCWWGG	1 cut(s)	1058
EcoT22I	ATGCAT	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	1058
FaqI	GGGAC	1 cut(s)	453
FauNDI	CATATG	1 cut(s)	882
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	5 cut(s)	372, 417, 615, 802, 945
FokI	GGATG	4 cut(s)	269, 850, 1046, 1253
Fsp4HI	GCNGC	5 cut(s)	372, 417, 615, 802, 945
FspBI	CTAG	4 cut(s)	56, 210, 758, 1339
GlaI	GCGC	2 cut(s)	899, 1328
GluI	GCNGC	5 cut(s)	372, 417, 615, 802, 945
HaeII	RGCGCY	1 cut(s)	901
HaeIII	GGCC	5 cut(s)	150, 523, 684, 976, 1284
HapII	CCGG	1 cut(s)	1188
HhaI	GCGC	2 cut(s)	900, 1329
Hin6I	GCGC	2 cut(s)	898, 1327
HinP1I	GCGC	2 cut(s)	898, 1327
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	4 cut(s)	40, 886, 1054, 1244
HpaII	CCGG	1 cut(s)	1188
HphI	GGTGA	3 cut(s)	574, 584, 1177
Hpy166II	GTNNAC	7 cut(s)	170, 307, 484, 599, 700, 809, 1218
Hpy188I	TCNGA	8 cut(s)	110, 462, 748, 1009, 1084, 1198, 1240, 1249
Hpy188III	TCNNGA	4 cut(s)	56, 191, 384, 1262
Hpy8I	GTNNAC	7 cut(s)	170, 307, 484, 599, 700, 809, 1218
HpyAV	CCTTC	4 cut(s)	232, 809, 1004, 1089
HpyCH4III	ACNGT	7 cut(s)	174, 596, 603, 704, 1106, 1126, 1177
HpyCH4IV	ACGT	1 cut(s)	442
HpyF10VI	GCNNNNNNNGC	8 cut(s)	249, 352, 413, 623, 798, 860, 953, 1163
HpyF3I	CTNAG	8 cut(s)	20, 48, 81, 107, 554, 721, 793, 1227
HpySE526I	ACGT	1 cut(s)	442
HspAI	GCGC	2 cut(s)	898, 1327
Kzo9I	GATC	5 cut(s)	52, 475, 751, 765, 829
LmnI	GCTCC	2 cut(s)	85, 412
Lsp1109I	GCAGC	5 cut(s)	383, 403, 601, 788, 956
LweI	GCATC	6 cut(s)	82, 626, 648, 872, 1024, 1075
MaeI	CTAG	4 cut(s)	56, 210, 758, 1339
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	3 cut(s)	949, 1126, 1183
MalI	GATC	5 cut(s)	54, 477, 753, 767, 831
MboI	GATC	5 cut(s)	52, 475, 751, 765, 829
MboII	GAAGA	6 cut(s)	225, 667, 775, 993, 1107, 1138
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	3 cut(s)	52, 765, 829
MhlI	GDGCHC	2 cut(s)	309, 601
MlsI	TGGCCA	1 cut(s)	1284
MluCI	AATT	7 cut(s)	289, 356, 567, 662, 918, 1300, 1310
MluNI	TGGCCA	1 cut(s)	1284
MlyI	GAGTC	2 cut(s)	1063, 1253
MmeI	TCCRAC	1 cut(s)	1227
Mox20I	TGGCCA	1 cut(s)	1284
Mph1103I	ATGCAT	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	1284
MseI	TTAA	3 cut(s)	287, 773, 966
MslI	CAYNNNNRTG	2 cut(s)	594, 1290
Msp20I	TGGCCA	1 cut(s)	1284
MspA1I	CMGCKG	3 cut(s)	146, 801, 947
MspI	CCGG	1 cut(s)	1188
MspR9I	CCNGG	4 cut(s)	973, 978, 1039, 1233
MunI	CAATTG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	1157
MvaI	CCWGG	4 cut(s)	973, 978, 1039, 1233
MwoI	GCNNNNNNNGC	8 cut(s)	249, 352, 413, 623, 798, 860, 953, 1163
NdeI	CATATG	1 cut(s)	882
NdeII	GATC	5 cut(s)	52, 475, 751, 765, 829
NlaIV	GGNNCC	2 cut(s)	87, 683
NmuCI	GTSAC	2 cut(s)	1126, 1183
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	2 cut(s)	247, 517
PaeI	GCATGC	1 cut(s)	247
PagI	TCATGA	1 cut(s)	1261
PctI	GAATGC	1 cut(s)	1157
PfeI	GAWTC	2 cut(s)	40, 886
PinAI	ACCGGT	1 cut(s)	1187
PkrI	GCNGC	5 cut(s)	373, 418, 616, 803, 946
Ple19I	CGATCG	1 cut(s)	754
PleI	GAGTC	2 cut(s)	1062, 1252
PpsI	GAGTC	2 cut(s)	1062, 1252
Psp6I	CCWGG	4 cut(s)	971, 976, 1037, 1231
PspGI	CCWGG	4 cut(s)	971, 976, 1037, 1231
PspN4I	GGNNCC	2 cut(s)	87, 683
PspPI	GGNCC	5 cut(s)	149, 682, 1109, 1135, 1249
PstI	CTGCAG	1 cut(s)	946
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	3 cut(s)	52, 765, 829
PvuI	CGATCG	1 cut(s)	754
PvuII	CAGCTG	3 cut(s)	146, 801, 947
RsaI	GTAC	5 cut(s)	391, 426, 483, 989, 1308
RsaNI	GTAC	5 cut(s)	390, 425, 482, 988, 1307
RseI	CAYNNNNRTG	2 cut(s)	594, 1290
SaqAI	TTAA	3 cut(s)	287, 773, 966
SatI	GCNGC	5 cut(s)	372, 417, 615, 802, 945
Sau3AI	GATC	5 cut(s)	52, 475, 751, 765, 829
Sau96I	GGNCC	5 cut(s)	149, 682, 1109, 1135, 1249
SchI	GAGTC	2 cut(s)	1063, 1253
ScrFI	CCNGG	4 cut(s)	973, 978, 1039, 1233
SduI	GDGCHC	2 cut(s)	309, 601
SfaNI	GCATC	6 cut(s)	82, 626, 648, 872, 1024, 1075
SfcI	CTRYAG	2 cut(s)	942, 1089
SinI	GGWCC	3 cut(s)	1109, 1135, 1249
SmiMI	CAYNNNNRTG	2 cut(s)	594, 1290
SmlI	CTYRAG	1 cut(s)	1047
SmoI	CTYRAG	1 cut(s)	1047
SphI	GCATGC	1 cut(s)	247
Sse9I	AATT	7 cut(s)	289, 356, 567, 662, 918, 1300, 1310
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	4 cut(s)	56, 210, 758, 1339
StyD4I	CCNGG	4 cut(s)	971, 976, 1037, 1231
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	7 cut(s)	174, 596, 603, 704, 1106, 1126, 1177
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	688, 889
TasI	AATT	7 cut(s)	289, 356, 567, 662, 918, 1300, 1310
TatI	WGTACW	2 cut(s)	481, 1306
TfiI	GAWTC	2 cut(s)	40, 886
Tru1I	TTAA	3 cut(s)	287, 773, 966
Tru9I	TTAA	3 cut(s)	287, 773, 966
TscAI	CASTG	2 cut(s)	1111, 1129
TseFI	GTSAC	2 cut(s)	1126, 1183
TseI	GCWGC	5 cut(s)	371, 416, 614, 801, 944
Tsp45I	GTSAC	2 cut(s)	1126, 1183
TspDTI	ATGAA	9 cut(s)	17, 273, 438, 483, 504, 509, 545, 828, 993
TspGWI	ACGGA	2 cut(s)	842, 924
TspRI	CASTG	2 cut(s)	1111, 1129
VneI	GTGCAC	2 cut(s)	305, 597
VpaK11BI	GGWCC	3 cut(s)	1109, 1135, 1249
XagI	CCTNNNNNAGG	1 cut(s)	469
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	2 cut(s)	247, 517
XcmI	CCANNNNNNNNNTGG	2 cut(s)	164, 853
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	4 cut(s)	56, 210, 758, 1339
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.