Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9382588 .. 9384692

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13190.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAACCTTTGAGCTTTCTCAGTAAGGTTCAAGACAAGAATCAATCTGAGGACCTAGAGACAATGCATATAAGTCATGCTAAGGAGCCTGATGCGGATATTGACCTGGGAGAAGTGTATTTTCTTATTATGCATTTTCTGTCTGCTGGACCATGCCACAGAACTTGTGGACAGTTGTGGAACGAACTTCTTGAACATCAACTTTTACCTAGAAGATATCATGCTTGGTATTCAAGAAAGGGCATCCACAGTGGGGATGAAAATGAAGATGGGAAATCATTTCCATTAAATTACAACATGCTGGTGCACAGGTATCCTCACATTGAAAATGATCATTTGGTAAAGCTTTTGAAGCAATTGATTTCAAGTGCAGCCCCACCATCGAGGGGTATGAGTGGTGGAAATGCTCCAAATGCAGCTGATGTGCCTACTCTCTTGGGACTTGGTTCATTTTCACTTCTGACCTATGAAAGGGATCAAGTGCACAATGAAATGAAGACCCCTCCTCCTCACATGCGTTGGCCTCACATGAAATCTCATCAGGTTCAAGGGCTACGGTTGAGAGAAATTGGGGGAGGTTTCACCCGACATCATCGTGCTCCGTCTATTCGTGCTGCATCCTATGCCATTGCAAAGCCCTCGACCATGTTTGAGAAGATGCAATTTACCAAGAGGCTAAGGGGCCATCGAAACTCTGTCTACTGTGGCAGCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

240

Amino Acids

27.24

Weight (kDa)

9.24

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	253, 386, 471
AgsI	TTSAA	7 cut(s)	32, 194, 234, 326, 352, 366, 548
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	3 cut(s)	15, 346, 419
AluI	AGCT	3 cut(s)	15, 346, 419
Alw21I	GWGCWC	3 cut(s)	309, 486, 601
Alw26I	GTCTC	1 cut(s)	53
Alw44I	GTGCAC	2 cut(s)	305, 482
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	2 cut(s)	521, 682
ApaLI	GTGCAC	2 cut(s)	305, 482
ApeKI	GCWGC	4 cut(s)	371, 416, 614, 708
AspS9I	GGNCC	3 cut(s)	52, 149, 682
AsuHPI	GGTGA	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	52, 149
BaeGI	GKGCMC	2 cut(s)	309, 486
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	3 cut(s)	309, 486, 601
BbvI	GCAGC	3 cut(s)	383, 428, 601
BccI	CCATC	3 cut(s)	263, 388, 693
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	324
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	56, 210
BfuI	GTATCC	1 cut(s)	324
BisI	GCNGC	4 cut(s)	372, 417, 615, 709
BlsI	GCNGC	4 cut(s)	373, 418, 616, 710
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	2 cut(s)	52, 149
BmgT120I	GGNCC	3 cut(s)	52, 149, 682
BmiI	GGNNCC	2 cut(s)	87, 683
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	82, 252, 626, 648
BpiI	GAAGAC	1 cut(s)	503
Bpu10I	CCTNAGC	2 cut(s)	81, 677
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 386, 471
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	3 cut(s)	243, 262, 617
BseLI	CCNNNNNNNGG	3 cut(s)	253, 386, 471
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	34, 39
BseRI	GAGGAG	2 cut(s)	495, 498
BseSI	GKGCMC	2 cut(s)	309, 486
BseXI	GCAGC	3 cut(s)	383, 428, 601
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	523, 684
BsiHKAI	GWGCWC	3 cut(s)	309, 486, 601
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	3 cut(s)	253, 386, 471
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	523, 684
Bsp1286I	GDGCHC	3 cut(s)	309, 486, 601
Bsp143I	GATC	2 cut(s)	331, 475
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	523, 684
BspCNI	CTCAG	2 cut(s)	33, 40
BspLI	GGNNCC	2 cut(s)	87, 683
BspPI	GGATC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	627
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	331, 475
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	4 cut(s)	174, 251, 558, 704
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstDEI	CTNAG	4 cut(s)	20, 48, 81, 677
BstENI	CCTNNNNNAGG	1 cut(s)	469
BstF5I	GGATG	3 cut(s)	243, 262, 617
BstKTI	GATC	2 cut(s)	334, 478
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	331, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 413, 623
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	2 cut(s)	301, 517
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	2 cut(s)	309, 486
BstV1I	GCAGC	3 cut(s)	383, 428, 601
BstV2I	GAAGAC	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	523, 684
BtsCI	GGATG	3 cut(s)	243, 262, 617
BtsIMutI	CAGTG	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	52, 149, 682
CspCI	CAANNNNNGTGG	2 cut(s)	146, 181
CviAII	CATG	7 cut(s)	77, 153, 221, 298, 514, 529, 646
DdeI	CTNAG	4 cut(s)	20, 48, 81, 677
DpnI	GATC	2 cut(s)	333, 477
DpnII	GATC	2 cut(s)	331, 475
Eco32I	GATATC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	52, 149
EcoNI	CCTNNNNNAGG	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	218
EcoT22I	ATGCAT	2 cut(s)	69, 135
FaeI	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	7 cut(s)	76, 152, 220, 297, 513, 528, 645
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	4 cut(s)	372, 417, 615, 709
FokI	GGATG	3 cut(s)	230, 269, 604
Fsp4HI	GCNGC	4 cut(s)	372, 417, 615, 709
FspBI	CTAG	2 cut(s)	56, 210
GluI	GCNGC	4 cut(s)	372, 417, 615, 709
HaeIII	GGCC	2 cut(s)	523, 684
Hin1II	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	4 cut(s)	170, 307, 484, 700
Hpy188I	TCNGA	2 cut(s)	49, 462
Hpy188III	TCNNGA	3 cut(s)	32, 191, 234
Hpy8I	GTNNAC	4 cut(s)	170, 307, 484, 700
HpyCH4III	ACNGT	4 cut(s)	174, 251, 558, 704
HpyCH4V	TGCA	9 cut(s)	67, 133, 307, 371, 416, 484, 617, 632, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 413, 623
HpyF3I	CTNAG	4 cut(s)	20, 48, 81, 677
Hsp92II	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	331, 475
LmnI	GCTCC	3 cut(s)	85, 412, 604
LpnPI	CCDG	7 cut(s)	92, 102, 119, 132, 287, 295, 527
Lsp1109I	GCAGC	3 cut(s)	383, 428, 601
LweI	GCATC	4 cut(s)	82, 252, 626, 648
MaeI	CTAG	2 cut(s)	56, 210
MalI	GATC	2 cut(s)	333, 477
MboI	GATC	2 cut(s)	331, 475
MboII	GAAGA	4 cut(s)	225, 278, 508, 667
MfeI	CAATTG	1 cut(s)	356
MhlI	GDGCHC	3 cut(s)	309, 486, 601
MluCI	AATT	4 cut(s)	289, 356, 567, 662
Mph1103I	ATGCAT	2 cut(s)	69, 135
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	2 cut(s)	302, 594
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	352, 413, 623
NdeII	GATC	2 cut(s)	331, 475
NlaIII	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
NlaIV	GGNNCC	2 cut(s)	87, 683
NsiI	ATGCAT	2 cut(s)	69, 135
NspI	RCATGY	2 cut(s)	301, 517
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	373, 418, 616, 710
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	87, 683
PspPI	GGNCC	3 cut(s)	52, 149, 682
PspPPI	RGGWCCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	302, 594
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	372, 417, 615, 709
Sau3AI	GATC	2 cut(s)	331, 475
Sau96I	GGNCC	3 cut(s)	52, 149, 682
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	3 cut(s)	309, 486, 601
SfaNI	GCATC	4 cut(s)	82, 252, 626, 648
SinI	GGWCC	2 cut(s)	52, 149
SmiMI	CAYNNNNRTG	2 cut(s)	302, 594
Sse9I	AATT	4 cut(s)	289, 356, 567, 662
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	2 cut(s)	56, 210
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	174, 251, 558, 704
TaqI	TCGA	3 cut(s)	383, 641, 688
TasI	AATT	4 cut(s)	289, 356, 567, 662
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	4 cut(s)	371, 416, 614, 708
TspDTI	ATGAA	8 cut(s)	17, 273, 279, 438, 483, 504, 509, 545
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	1 cut(s)	256
VneI	GTGCAC	2 cut(s)	305, 482
VpaK11BI	GGWCC	2 cut(s)	52, 149
XagI	CCTNNNNNAGG	1 cut(s)	469
XceI	RCATGY	2 cut(s)	301, 517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	2 cut(s)	56, 210
Zsp2I	ATGCAT	2 cut(s)	69, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.