Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Reverse (-)

47020823 .. 47035349

Gene Structure 14527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG255100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4911 bp

ATGTCACTCTTCCTTAGGTATCCTCACATTGAGCAGGATCACTTGGTAAAGCTTTTGAAGCAAATGATTTTGAGTACAGCTCCACCATCAAGGGGTATGAGTGTTGGAAATGCCCCTAATGCAGCTGATGTACCAACTCTCTTGGGAACGGGCTCATTTTCACTTCTGAGCTATGATAGGGATCAAGAAAACAACGAAATGAACCGGCCTGCTGCTTACATGCGTTGGCCTCACATCAAAGCTAATCAGGTGCATGGGCTAGGTTTGAGGGAAATTGGGGGAGGTTTCACCAGACATCACCGTGCACCATCTGTTCGTGCTGCATCCTATGCCATTGCGAAACCATCAACCATGTTTCAGAAGATGAAAAATACCAAGAGAATAAGGGGCCATCGAAACGCTGTCTATTGTGCAATATTTGATCGCTCAGGTAGATATGTTATCACTGGTTCAGATGATCGCCTAGTGAAGATCTGGTTAATAGAAACTGCATTTTGCTTGGCCAGCTGCCGTGGACATGAAGGTGACATCACTGATTTAGCTGTGAGCTCCAACAATGCTTTGGTGGCATCTGCTTCAAATGACTGTATCATACGAGTTTGGCGCTTGCCAGATGGGCTTCCAATTTCGGTGTTGCGGGGACACACCGGAGCTGTGACTGCAATTGAATTTAATCCCAGGCCTGGCTCTATATACCACCTTCTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCCAGGAATTCTCAAGTGACTCCAAGGATATACATTCCAAAACCTTCAGATACTATAACTGGGAGAAACAGTGGTCCATCCTCAAGCACTGTACAGAGCCATCAAATCTTCTGTTGTGCATTTAATGCTAATGGAACAGTCTTTGTTACCGGTAGCTCAGACACTCTTGCGAGGGTGTGGAGTGCTTCCAAGCCAGGCTCAGATGAGTCGGACCAACCGAATCATGAAATAGATGTGTTATCTGGGCATGAGAATGATGTCAATTACGTACAATTTAGTGGATGTGCTGTAGTTTCTAGATTTATGGCAGCTGACACCTCAAAGGAAGAGAATGTTCCAAAATTTAAAAATTCATGGTTCAATCATGACAATATAGTTACTTGCTCTCGCGATGGGAGTGCAATTATCTGGATTCCAAAGTCACGAAGATCACATGGAAAAGCTGGTCGTTGGACACGAGCTTATCATCTGAAAGTTCCACCTCCACCAATGCCTCCTCAACCTTCACGTGGAGGCCCCCGCCAGAGAATTCTTCCAACTCCTCGTGGTGTTAATATGATTACCTGGAGTCTTGATAATCGCTTTGTTCTTGCTGCTATCATGGATTGCAGAATATGTGTATGGAATGCATCTGATGGTAGCTTGGTCCATTCTTTAACTGGTCACAGTGATTCTACATATGTTCTGGATGTTCACCCTTTCAACCCCAGGTTGGCAATGAGTGCTGGCTATGATGGAAAAACAATTGTCTGGGATATATGGGAAGGCATGCCTATCCGGATATATCAAACTTCACAGTTCAAATTGGTTGACGGAAAGTTTTCACCGGACGGAACGTCAATTATACTATCTGATGATGTTGGCCAACTCTACATATTGGACAGTGGCCAAGGGGAGTCCCACAATGATGCAAAATATGATCAGTTCTTTCTTGGTGATTATCGCCCAATCATTCAAGATAGCTTCGGAAATGTTCTTGACCAGGAAACTCAGATTCCAGCATACCGACGAAATATGCAGGATCTACTTTGTGATTCAGGCATGATACCATATCCGGAGCCCTACCAGAGTACATACCAGAAGAGAAGGCTAGGAGCTCTGGGTTCTGAGTGGCGTCCTTCCTCTTTAAAACTTGCTGTTGGGCCTGACTTCAGTCTAGATCCAGATTTCCAAATGCTACCTTTGGCAGACTTGGATATGTTATTGACCGAGCCACTACCAGAGTTTGTAGATGCCATGGATTGGGAACCAGAAAATGAAATGCATAGTGATGATGCTGATTCAGAGTACAATATTACTGAAGATTATTCTACTGGAGGGGAGCAAGGAAGTTTAAGTTCAAACCCTTCTGTTGATCCAGACTGCAGTGCAGAAGATAGTGACGAGGATGCTCAACTGGATGGACTACGAAGATCAAGAAGGAAAAAACAAAAGGCTGATATTGAAGTCATGACGTCTTCTGGAAGGTGTGTTAAAAGGAGGAACTTGGATGAGCGTGATGATCACTCTTTCAGAAGTAATAGAACAAGGAAATCAAGGCATGGCCGAAAAATTTCAAAAAAGAAATGCTCCGCATCAAAGTCACAGAGACCTCGAAGAGTTGCTGCACGCAATGCCCTTACACTATTTTCTAAGATAACTGGACGAGATGCTGGTGGAGAAGATGAAGATGGATCCGAAGGAGAAATTTCAGGTAGTGAATCCACGCTGCAAGATTCAAATATTGAGAGTGACGGATCCGATAGGGAAAATCACCAAAGCAACTATATGAAAGGAAAACAGGTTTTACTCTATGAATCTGAGGGTCTGGTCAATTCTCATGAACTTCCTGAATTTCAAAGAAACTCTGGGAACAGGAGGAGATTAGTGCTAAAACTGCCAAGACGGCCGTCAAATACAAATACGCTTGTGGATACAGATAAGTGTGGAAATCCGCCTTATTTGGGTGACCAATCTTGTAGTCACAAAGCCAGTGAAGCAAATGAGACTCATATGAGCTCTCAGGATCTGAGGAGCTCTCCTGGTCATAAAAATTGCAGCATGTTTGAAAGAGCAGTGGGAGGGCAATCAAACAAAGTTGAAAATTATTTAGACTTGACTGAGAATTTCAAAGTTGGAAGTATAAGATGGGGAGGGTCCAGAGCTCGAACATTGAAGCGGCTGAGAGTGGGAGAAGCCACATCACTGGATGCACTTGCCACTACCAGTATAGCTGTTGTTGGTCACACTGAAAAAAATTACACAGAATCTGAAAAAGATTGTCGAAAAATGTCCCCTAAATTAGAAAGCCAAAGGAATGGGGATATGATGGATGGAGTGGTTATGACGAATGAGAGAACTATTGGGACTAGTACCTTTGAGGGTCTTAATGGTAAAGCCGAGGTTAATGAGCACGCAGGATTTAGTGAATGTAAGGATTATGACCAATCACCTAAATCTGTTCACATGGCTCCTTGGGATGCAAGCACTGCCTCTTACCTCGACAAGGATGGGACTGTTTTCTCTTCTGAACAAAACGAGAAGCTCACACCGGTCTCGACAAAATTAAGGTTGAGGAAGATTTCGAGGGACCCTGAAAGTCCTTGCAAACAGGAAATGAGCCCTGTAGTAGAGAACTTGGAAAGCGGTAGATGTAACGCATTGCCTGAAAGCCTTTCAACAATAGATCATGATTCAATTGTGCCGGAGGATAATGGCACCCATAAATTTGATTCAGATCAAAGATGCAGCGGCTCACGAGAATCAGACACTCAAATTGAATCAGTCGAGTCCCATCTAAATAGAAACAAAATGTTTAGTGCTGTTTATAGGAGGGTGAAATCACATAGGGGGCAGACTAATATAGAAGGTGAAAGTAGTAGGAAGGGAGAAGGATCTTCACAAATTTCCAACACTAGTGACCAAAATCTCATCGCTGTACTGGACTGCCGTGACGATTCAATTGATGGAGCTCGTAGGACACGGTCCATGGGGTTGAAGGCCTCTACCCGTGATCCAAGTAGTGTGGATCATGATCTCAAGTTAAGTCAAGGCCATGAGCCTAGGTATACATTCAGAAGTGCCCAGAACAACACTCTGCACAAATGTCAATTTCAGAATGAAGAACAGGGATCAAGTTCAAGGACAGCAGTGGGGTTGAGATCTACTAGAAACAGAAGGAGTTATTATGATCATGACATGCATCCAATAGACAAAAGGAAGTCGCATCAATCAACGAGGAAAGGAACATGGTTGATGTTGTCCGCACATGAGGAGAGCTCGCGATATATTCCCCAGTTGGGGGATGAAGTTGTCTATTTGAGACAGGGGCATCAGGAGTATTTTGATCTTGGTAGGTTGAGAGAAGACCCACCTTGGGCATTTATAAAGCAAAGAATAAGAGCTGTGGAATTTTGTAAAGTTCAAGACCTAGAGTATTCTTTACTTCCAGGGTCTGGGGATAGCTGCTGTAAATTGACCCTTGAATTTGTAGATCCTTCATCTGATGTTTACTGCAAATCTTTCAAGATGACTCTGCCTGAAGTTACTGGTTTCCCCGATTTCATTGTTGAAAGAACTCGCTATGTTGCTGCAATTGGGAAAAAATGGTCATGTAGGGATAAGTGCAAAGTCTGGTGGAAAAATGACGGTGACGATGATGGTAGTTGGTGGGATGGCCGGGTTGTGCTTATTCAGCCCAAATCTCCCGAATTTCCAGACAGTCCATGGGAAACGTGTACGGTTCTGTACAGGACTGTTCCTAAAGAGACTCAGCTACATAGTCCTTGGGAGCTTTTTGATACCGATACTCAATGGGTTCAGCCTCAGATTGATGAGAAGAGCAAAAACAAGCTGCATTCTGCCCTTGCCAAACTAGAGAAATTAGCCAGCAGTCGTCAGGATTCGTTAGGGATTAATAAATTGAAGCAGCTTCAGGAGAAGCCGAAGTTCACAAATTGGTGTGCAGTTCCAATATCTCTCGACTTGATCCAGAGTAGGTTAGAAAACGACTATTATCGAAGTTTGGAAGCACTGAAGCATGACTTTAAGGTAATGCTGTTAGATGCGCAAGCCTATGTAGAAAGCCATGCGGAGTCTTCAGGCAAAACGAAACGGACAACAGATAAAGAGTTTCTAGAGAAACTGAAATGCCTATCAGGCTGGTTCACAGAGACAATTTCGTCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

1636

Amino Acids

183.75

Weight (kDa)

6.63

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	118 - 254	4.8e-12	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	119 - 206	9.6e-18	THOC3 beta-propeller domain
WDR55	PF24796	120 - 253	5.4e-07	WDR55
WD40_CDC20-Fz	PF24807	120 - 254	1.2e-14	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	121 - 252	5.5e-22	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	122 - 335	3.9e-13	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	122 - 203	1.3e-10	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	123 - 254	8e-27	WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	123 - 203	3.3e-06	MABP1/WDR62 second WD40 domain
WD40	PF00400	124 - 159	6.7e-07	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	126 - 202	7.4e-10	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	130 - 254	3e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_SCAP	PF24017	143 - 248	4.9e-09	SCAP Beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	166 - 258	1.4e-07	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	166 - 201	1.5e-07	WD domain, G-beta repeat
EIF3I	PF24805	171 - 255	1.4e-06	EIF3I
Beta-prop_THOC3	PF25174	173 - 256	8.1e-12	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	176 - 265	6.5e-12	WDHD1 first WD40 domain
WD40	PF00400	208 - 247	5.3e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	429 - 545	3.8e-11	WDR5 beta-propeller domain
WD40_Prp19	PF24814	430 - 542	2.4e-07	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	430 - 507	1.9e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	431 - 554	3.5e-14	THOC3 beta-propeller domain
BRWD_AD	PF25313	1334 - 1510	6.5e-55	BRWD/PHIP ancillary domain-like domain
Bromodomain	PF00439	1551 - 1602	1.5e-06	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4106
AasI	GACNNNNNNGTC	1 cut(s)	4900
AatII	GACGTC	1 cut(s)	2198
Acc16I	TGCGCA	1 cut(s)	4788
AccB1I	GGYRCC	1 cut(s)	3437
AccB7I	CCANNNNNTGG	2 cut(s)	1983, 4175
AccI	GTMKAC	1 cut(s)	3788
AccII	CGCG	2 cut(s)	1131, 4003
AccIII	TCCGGA	2 cut(s)	1518, 1795
AciI	CCGC	9 cut(s)	637, 1261, 2313, 2675, 2899, 3366, 3471, 3984, 4811
AcoI	YGGCCR	6 cut(s)	501, 1603, 1627, 2284, 2627, 4396
AcuI	CTGAAG	7 cut(s)	771, 1876, 2061, 4281, 4637, 4775, 4803
AcvI	CACGTG	1 cut(s)	1250
AcyI	GRCGYC	2 cut(s)	1855, 2195
AflIII	ACRYGT	1 cut(s)	4454
AgeI	ACCGGT	2 cut(s)	890, 3271
AhdI	GACNNNNNGTC	1 cut(s)	1576
AhlI	ACTAGT	2 cut(s)	3089, 3635
AjnI	CCWGG	9 cut(s)	677, 682, 743, 934, 1304, 1448, 1722, 2761, 4168
Alw21I	GWGCWC	9 cut(s)	307, 551, 1840, 2741, 2759, 2887, 3135, 3694, 4001
Alw26I	GTCTC	6 cut(s)	2323, 2720, 3280, 4036, 4481, 4886
Alw44I	GTGCAC	1 cut(s)	303
AlwNI	CAGNNNCTG	3 cut(s)	2749, 2990, 4175
Aor13HI	TCCGGA	2 cut(s)	1518, 1795
ApaLI	GTGCAC	1 cut(s)	303
AseI	ATTAAT	1 cut(s)	4635
AsiGI	ACCGGT	2 cut(s)	890, 3271
Asp700I	GAANNNNTTC	2 cut(s)	1561, 2293
AspA2I	CCTAGG	1 cut(s)	3782
AspLEI	GCGC	2 cut(s)	606, 4789
AspS9I	GGNCC	9 cut(s)	388, 815, 952, 1256, 1387, 1883, 2877, 3310, 3705
AsuC2I	CCSGG	1 cut(s)	4400
AvaII	GGWCC	6 cut(s)	815, 952, 1387, 2877, 3310, 3705
AvrII	CCTAGG	1 cut(s)	3782
AxyI	CCTNAGG	1 cut(s)	14
BaeGI	GKGCMC	2 cut(s)	307, 3805
BalI	TGGCCA	3 cut(s)	503, 1605, 1629
BamHI	GGATCC	2 cut(s)	2414, 2477
BanI	GGYRCC	1 cut(s)	3437
BauI	CACGAG	3 cut(s)	1197, 1284, 3477
BbrPI	CACGTG	1 cut(s)	1250
BbsI	GAAGAC	3 cut(s)	2190, 4092, 4809
Bbv12I	GWGCWC	9 cut(s)	307, 551, 1840, 2741, 2759, 2887, 3135, 3694, 4001
BceAI	ACGGC	4 cut(s)	495, 2614, 2642, 3654
BcgI	CGANNNNNNTGC	2 cut(s)	1121, 1155
BciT130I	CCWGG	9 cut(s)	679, 684, 745, 936, 1306, 1450, 1724, 2763, 4170
BciVI	GTATCC	2 cut(s)	30, 2647
BclI	TGATCA	3 cut(s)	1660, 2242, 3910
BcnI	CCSGG	1 cut(s)	4400
BcoDI	GTCTC	6 cut(s)	2323, 2720, 3280, 4036, 4481, 4886
BcuI	ACTAGT	2 cut(s)	3089, 3635
BfmI	CTRYAG	4 cut(s)	1029, 2104, 3345, 4907
BfoI	RGCGCY	1 cut(s)	607
BfuI	GTATCC	2 cut(s)	30, 2647
BglI	GCCNNNNNGGC	3 cut(s)	616, 2626, 4878
BglII	AGATCT	2 cut(s)	471, 3881
BlnI	CCTAGG	1 cut(s)	3782
Bme18I	GGWCC	6 cut(s)	815, 952, 1387, 2877, 3310, 3705
BmeRI	GACNNNNNGTC	1 cut(s)	1576
BmgT120I	GGNCC	9 cut(s)	388, 815, 952, 1256, 1387, 1883, 2877, 3310, 3705
BmrI	ACTGGG	2 cut(s)	810, 4009
BmuI	ACTGGG	2 cut(s)	810, 4009
BoxI	GACNNNNGTC	2 cut(s)	1893, 2629
BpiI	GAAGAC	3 cut(s)	2190, 4092, 4809
BplI	GAGNNNNNCTC	6 cut(s)	64, 96, 2743, 2775, 3983, 4015
BpmI	CTGGAG	2 cut(s)	1327, 2076
Bpu10I	CCTNAGC	1 cut(s)	427
BpuEI	CTTGAG	3 cut(s)	738, 808, 3743
BpuMI	CCSGG	1 cut(s)	4400
BsaAI	YACGTR	2 cut(s)	1009, 1250
BsaBI	GATNNNNATC	3 cut(s)	180, 3456, 3753
BsaHI	GRCGYC	2 cut(s)	1855, 2195
BsaI	GGTCTC	2 cut(s)	2323, 3280
BsaWI	WCCGGW	6 cut(s)	647, 890, 1518, 1567, 1795, 3271
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bse118I	RCCGGY	3 cut(s)	204, 890, 3271
Bse21I	CCTNAGG	1 cut(s)	14
Bse3DI	GCAATG	4 cut(s)	333, 1464, 2359, 3380
Bse8I	GATNNNNATC	3 cut(s)	180, 3456, 3753
BseAI	TCCGGA	2 cut(s)	1518, 1795
BseBI	CCWGG	9 cut(s)	679, 684, 745, 936, 1306, 1450, 1724, 2763, 4170
BseJI	GATNNNNATC	3 cut(s)	180, 3456, 3753
BseMI	GCAATG	4 cut(s)	333, 1464, 2359, 3380
BseRI	GAGGAG	5 cut(s)	1227, 1272, 2614, 2767, 4007
BseSI	GKGCMC	2 cut(s)	307, 3805
BseX3I	CGGCCG	1 cut(s)	2627
BsgI	GTGCAG	4 cut(s)	2130, 2331, 3803, 4704
Bsh1236I	CGCG	2 cut(s)	1131, 4003
Bsh1285I	CGRYCG	1 cut(s)	2630
BshNI	GGYRCC	1 cut(s)	3437
BshTI	ACCGGT	2 cut(s)	890, 3271
BsiEI	CGRYCG	1 cut(s)	2630
BsiHKAI	GWGCWC	9 cut(s)	307, 551, 1840, 2741, 2759, 2887, 3135, 3694, 4001
BsiSI	CCGG	9 cut(s)	205, 648, 891, 1519, 1568, 1796, 3272, 3425, 4399
BslFI	GGGAC	8 cut(s)	654, 1624, 2998, 3100, 3247, 3323, 3496, 4888
BsmAI	GTCTC	6 cut(s)	2323, 2720, 3280, 4036, 4481, 4886
BsmFI	GGGAC	8 cut(s)	654, 1624, 2998, 3100, 3247, 3323, 3496, 4888
BsmI	GAATGC	2 cut(s)	1372, 4576
Bso31I	GGTCTC	2 cut(s)	2323, 3280
Bsp13I	TCCGGA	2 cut(s)	1518, 1795
Bsp1407I	TGTACA	2 cut(s)	832, 4467
Bsp19I	CCATGG	3 cut(s)	1977, 3708, 4445
Bsp68I	TCGCGA	2 cut(s)	1131, 4003
BspACI	CCGC	9 cut(s)	637, 1261, 2313, 2675, 2899, 3366, 3471, 3984, 4811
BspEI	TCCGGA	2 cut(s)	1518, 1795
BspFNI	CGCG	2 cut(s)	1131, 4003
BspHI	TCATGA	7 cut(s)	964, 1105, 2190, 2560, 3409, 3751, 3913
BspMAI	CTGCAG	1 cut(s)	2108
BspQI	GCTCTTC	1 cut(s)	4553
BspT107I	GGYRCC	1 cut(s)	3437
BspTNI	GGTCTC	2 cut(s)	2323, 3280
BsrDI	GCAATG	4 cut(s)	333, 1464, 2359, 3380
BsrFI	RCCGGY	3 cut(s)	204, 890, 3271
BsrGI	TGTACA	2 cut(s)	832, 4467
BssAI	RCCGGY	3 cut(s)	204, 890, 3271
BssNAI	GTATAC	1 cut(s)	3789
BssNI	GRCGYC	2 cut(s)	1855, 2195
BssSI	CACGAG	3 cut(s)	1197, 1284, 3477
BssT1I	CCWWGG	9 cut(s)	764, 1630, 1977, 3194, 3708, 3782, 4094, 4445, 4505
Bst1107I	GTATAC	1 cut(s)	3789
Bst2BI	CACGAG	3 cut(s)	1197, 1284, 3477
Bst2UI	CCWGG	9 cut(s)	679, 684, 745, 936, 1306, 1450, 1724, 2763, 4170
Bst6I	CTCTTC	6 cut(s)	14, 1062, 1817, 2332, 3250, 4553
BstACI	GRCGYC	2 cut(s)	1855, 2195
BstAPI	GCANNNNNTGC	5 cut(s)	329, 866, 1463, 2354, 3209
BstAUI	TGTACA	2 cut(s)	832, 4467
BstBAI	YACGTR	2 cut(s)	1009, 1250
BstDSI	CCRYGG	4 cut(s)	511, 1977, 3708, 4445
BstEII	GGTNACC	1 cut(s)	2687
BstENI	CCTNNNNNAGG	1 cut(s)	3224
BstFNI	CGCG	2 cut(s)	1131, 4003
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	2 cut(s)	606, 4789
BstMAI	GTCTC	6 cut(s)	2323, 2720, 3280, 4036, 4481, 4886
BstMCI	CGRYCG	1 cut(s)	2630
BstNI	CCWGG	9 cut(s)	679, 684, 745, 936, 1306, 1450, 1724, 2763, 4170
BstNSI	RCATGY	4 cut(s)	223, 1513, 2785, 3922
BstPAI	GACNNNNGTC	2 cut(s)	1893, 2629
BstPI	GGTNACC	1 cut(s)	2687
BstSFI	CTRYAG	4 cut(s)	1029, 2104, 3345, 4907
BstSLI	GKGCMC	2 cut(s)	307, 3805
BstSNI	TACGTA	1 cut(s)	1009
BstUI	CGCG	2 cut(s)	1131, 4003
BstV2I	GAAGAC	3 cut(s)	2190, 4092, 4809
BstX2I	RGATCY	9 cut(s)	471, 1762, 1900, 2414, 2477, 2746, 3614, 3881, 4213
BstXI	CCANNNNNNTGG	2 cut(s)	2926, 3038
BstYI	RGATCY	9 cut(s)	471, 1762, 1900, 2414, 2477, 2746, 3614, 3881, 4213
BstZ17I	GTATAC	1 cut(s)	3789
BstZI	CGGCCG	1 cut(s)	2627
Bsu36I	CCTNAGG	1 cut(s)	14
BsuI	GTATCC	2 cut(s)	30, 2647
BtgI	CCRYGG	4 cut(s)	511, 1977, 3708, 4445
BtgZI	GCGATG	2 cut(s)	1146, 3637
BtsI	GCAGTG	4 cut(s)	2113, 2802, 3207, 3876
BtuMI	TCGCGA	2 cut(s)	1131, 4003
CaiI	CAGNNNCTG	3 cut(s)	2749, 2990, 4175
CciI	TCATGA	7 cut(s)	964, 1105, 2190, 2560, 3409, 3751, 3913
CfoI	GCGC	2 cut(s)	606, 4789
Cfr10I	RCCGGY	3 cut(s)	204, 890, 3271
Cfr13I	GGNCC	9 cut(s)	388, 815, 952, 1256, 1387, 1883, 2877, 3310, 3705
CseI	GACGC	1 cut(s)	1844
CspAI	ACCGGT	2 cut(s)	890, 3271
CspCI	CAANNNNNGTGG	2 cut(s)	3726, 3761
DraI	TTTAAA	2 cut(s)	1087, 1869
DrdI	GACNNNNNNGTC	1 cut(s)	4900
DriI	GACNNNNNGTC	1 cut(s)	1576
DseDI	GACNNNNNNGTC	1 cut(s)	4900
EaeI	YGGCCR	6 cut(s)	501, 1603, 1627, 2284, 2627, 4396
EagI	CGGCCG	1 cut(s)	2627
Eam1104I	CTCTTC	6 cut(s)	14, 1062, 1817, 2332, 3250, 4553
Eam1105I	GACNNNNNGTC	1 cut(s)	1576
EarI	CTCTTC	6 cut(s)	14, 1062, 1817, 2332, 3250, 4553
EciI	GGCGGA	1 cut(s)	2664
Ecl136II	GAGCTC	7 cut(s)	549, 1838, 2739, 2757, 2885, 3692, 3999
EclXI	CGGCCG	1 cut(s)	2627
Eco105I	TACGTA	1 cut(s)	1009
Eco130I	CCWWGG	9 cut(s)	764, 1630, 1977, 3194, 3708, 3782, 4094, 4445, 4505
Eco147I	AGGCCT	2 cut(s)	682, 3722
Eco31I	GGTCTC	2 cut(s)	2323, 3280
Eco47I	GGWCC	6 cut(s)	815, 952, 1387, 2877, 3310, 3705
Eco52I	CGGCCG	1 cut(s)	2627
Eco53kI	GAGCTC	7 cut(s)	549, 1838, 2739, 2757, 2885, 3692, 3999
Eco57I	CTGAAG	7 cut(s)	771, 1876, 2061, 4281, 4637, 4775, 4803
Eco72I	CACGTG	1 cut(s)	1250
Eco81I	CCTNAGG	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	2687
EcoICRI	GAGCTC	7 cut(s)	549, 1838, 2739, 2757, 2885, 3692, 3999
EcoNI	CCTNNNNNAGG	1 cut(s)	3224
EcoO109I	RGGNCCY	2 cut(s)	1256, 3310
EcoO65I	GGTNACC	1 cut(s)	2687
EcoRI	GAATTC	2 cut(s)	748, 1269
EcoRII	CCWGG	9 cut(s)	677, 682, 743, 934, 1304, 1448, 1722, 2761, 4168
EcoT14I	CCWWGG	9 cut(s)	764, 1630, 1977, 3194, 3708, 3782, 4094, 4445, 4505
EcoT22I	ATGCAT	3 cut(s)	1372, 2007, 3924
ErhI	CCWWGG	9 cut(s)	764, 1630, 1977, 3194, 3708, 3782, 4094, 4445, 4505
FalI	AAGNNNNNCTT	2 cut(s)	4748, 4780
FaqI	GGGAC	8 cut(s)	654, 1624, 2998, 3100, 3247, 3323, 3496, 4888
FauI	CCCGC	2 cut(s)	630, 1268
FauNDI	CATATG	2 cut(s)	1420, 2733
FbaI	TGATCA	3 cut(s)	1660, 2242, 3910
FblI	GTMKAC	1 cut(s)	3788
FspI	TGCGCA	1 cut(s)	4788
GlaI	GCGC	2 cut(s)	605, 4788
GsuI	CTGGAG	2 cut(s)	1327, 2076
HaeII	RGCGCY	1 cut(s)	607
HapII	CCGG	9 cut(s)	205, 648, 891, 1519, 1568, 1796, 3272, 3425, 4399
HgaI	GACGC	1 cut(s)	1844
HhaI	GCGC	2 cut(s)	606, 4789
Hin1I	GRCGYC	2 cut(s)	1855, 2195
Hin6I	GCGC	2 cut(s)	604, 4787
HinP1I	GCGC	2 cut(s)	604, 4787
HincII	GTYRAC	1 cut(s)	1552
HindII	GTYRAC	1 cut(s)	1552
HindIII	AAGCTT	1 cut(s)	50
HpaII	CCGG	9 cut(s)	205, 648, 891, 1519, 1568, 1796, 3272, 3425, 4399
Hpy99I	CGWCG	1 cut(s)	1752
HpyCH4IV	ACGT	5 cut(s)	1008, 1249, 1577, 2195, 4454
HpySE526I	ACGT	5 cut(s)	1008, 1249, 1577, 2195, 4454
Hsp92I	GRCGYC	2 cut(s)	1855, 2195
HspAI	GCGC	2 cut(s)	604, 4787
KflI	GGGWCCC	1 cut(s)	3310
Kpn2I	TCCGGA	2 cut(s)	1518, 1795
Ksp22I	TGATCA	3 cut(s)	1660, 2242, 3910
LguI	GCTCTTC	1 cut(s)	4553
MaeII	ACGT	5 cut(s)	1008, 1249, 1577, 2195, 4454
MfeI	CAATTG	5 cut(s)	663, 1485, 3417, 3681, 4314
MflI	RGATCY	9 cut(s)	471, 1762, 1900, 2414, 2477, 2746, 3614, 3881, 4213
MlsI	TGGCCA	3 cut(s)	503, 1605, 1629
MluNI	TGGCCA	3 cut(s)	503, 1605, 1629
MlyI	GAGTC	9 cut(s)	754, 956, 1318, 1646, 2722, 3518, 4246, 4483, 4823
MmeI	TCCRAC	7 cut(s)	85, 576, 930, 1172, 1301, 2836, 3654
Mox20I	TGGCCA	3 cut(s)	503, 1605, 1629
Mph1103I	ATGCAT	3 cut(s)	1372, 2007, 3924
MroI	TCCGGA	2 cut(s)	1518, 1795
MroXI	GAANNNNTTC	2 cut(s)	1561, 2293
MscI	TGGCCA	3 cut(s)	503, 1605, 1629
MslI	CAYNNNNRTG	5 cut(s)	300, 522, 993, 1647, 2010
Msp20I	TGGCCA	3 cut(s)	503, 1605, 1629
MspA1I	CMGCKG	4 cut(s)	125, 507, 1052, 3471
MspI	CCGG	9 cut(s)	205, 648, 891, 1519, 1568, 1796, 3272, 3425, 4399
MunI	CAATTG	5 cut(s)	663, 1485, 3417, 3681, 4314
Mva1269I	GAATGC	2 cut(s)	1372, 4576
MvaI	CCWGG	9 cut(s)	679, 684, 745, 936, 1306, 1450, 1724, 2763, 4170
MvnI	CGCG	2 cut(s)	1131, 4003
NciI	CCSGG	1 cut(s)	4400
NcoI	CCATGG	3 cut(s)	1977, 3708, 4445
NdeI	CATATG	2 cut(s)	1420, 2733
NmeAIII	GCCGAG	1 cut(s)	3145
NruI	TCGCGA	2 cut(s)	1131, 4003
NsbI	TGCGCA	1 cut(s)	4788
NsiI	ATGCAT	3 cut(s)	1372, 2007, 3924
NspI	RCATGY	4 cut(s)	223, 1513, 2785, 3922
PaeI	GCATGC	1 cut(s)	1513
PagI	TCATGA	7 cut(s)	964, 1105, 2190, 2560, 3409, 3751, 3913
PceI	AGGCCT	2 cut(s)	682, 3722
PciSI	GCTCTTC	1 cut(s)	4553
PcsI	WCGNNNNNNNCGW	2 cut(s)	956, 1195
PctI	GAATGC	2 cut(s)	1372, 4576
PdmI	GAANNNNTTC	2 cut(s)	1561, 2293
PflFI	GACNNNGTC	1 cut(s)	3703
PflMI	CCANNNNNTGG	2 cut(s)	1983, 4175
PinAI	ACCGGT	2 cut(s)	890, 3271
PleI	GAGTC	9 cut(s)	754, 955, 1317, 1645, 2722, 3517, 4246, 4483, 4822
PmaCI	CACGTG	1 cut(s)	1250
PmlI	CACGTG	1 cut(s)	1250
PpsI	GAGTC	9 cut(s)	754, 955, 1317, 1645, 2722, 3517, 4246, 4483, 4822
Ppu21I	YACGTR	2 cut(s)	1009, 1250
PpuMI	RGGWCCY	1 cut(s)	3310
PshAI	GACNNNNGTC	2 cut(s)	1893, 2629
PshBI	ATTAAT	1 cut(s)	4635
PsiI	TTATAA	1 cut(s)	4106
Psp124BI	GAGCTC	7 cut(s)	551, 1840, 2741, 2759, 2887, 3694, 4001
Psp5II	RGGWCCY	1 cut(s)	3310
Psp6I	CCWGG	9 cut(s)	677, 682, 743, 934, 1304, 1448, 1722, 2761, 4168
PspCI	CACGTG	1 cut(s)	1250
PspEI	GGTNACC	1 cut(s)	2687
PspGI	CCWGG	9 cut(s)	677, 682, 743, 934, 1304, 1448, 1722, 2761, 4168
PspPI	GGNCC	9 cut(s)	388, 815, 952, 1256, 1387, 1883, 2877, 3310, 3705
PspPPI	RGGWCCY	1 cut(s)	3310
PstI	CTGCAG	1 cut(s)	2108
PstNI	CAGNNNCTG	3 cut(s)	2749, 2990, 4175
PsuI	RGATCY	9 cut(s)	471, 1762, 1900, 2414, 2477, 2746, 3614, 3881, 4213
PsyI	GACNNNGTC	1 cut(s)	3703
PvuII	CAGCTG	3 cut(s)	125, 507, 1052
RruI	TCGCGA	2 cut(s)	1131, 4003
RseI	CAYNNNNRTG	5 cut(s)	300, 522, 993, 1647, 2010
SacI	GAGCTC	7 cut(s)	551, 1840, 2741, 2759, 2887, 3694, 4001
SapI	GCTCTTC	1 cut(s)	4553
Sau96I	GGNCC	9 cut(s)	388, 815, 952, 1256, 1387, 1883, 2877, 3310, 3705
SchI	GAGTC	9 cut(s)	754, 956, 1318, 1646, 2722, 3518, 4246, 4483, 4823
SfcI	CTRYAG	4 cut(s)	1029, 2104, 3345, 4907
SinI	GGWCC	6 cut(s)	815, 952, 1387, 2877, 3310, 3705
SmiMI	CAYNNNNRTG	5 cut(s)	300, 522, 993, 1647, 2010
SmlI	CTYRAG	3 cut(s)	753, 823, 3758
SmoI	CTYRAG	3 cut(s)	753, 823, 3758
SnaBI	TACGTA	1 cut(s)	1009
SpeI	ACTAGT	2 cut(s)	3089, 3635
SphI	GCATGC	1 cut(s)	1513
SseBI	AGGCCT	2 cut(s)	682, 3722
SsiI	CCGC	9 cut(s)	637, 1261, 2313, 2675, 2899, 3366, 3471, 3984, 4811
SspI	AATATT	3 cut(s)	417, 2035, 2464
SstI	GAGCTC	7 cut(s)	551, 1840, 2741, 2759, 2887, 3694, 4001
StuI	AGGCCT	2 cut(s)	682, 3722
StyI	CCWWGG	9 cut(s)	764, 1630, 1977, 3194, 3708, 3782, 4094, 4445, 4505
TaiI	ACGT	5 cut(s)	1011, 1252, 1580, 2198, 4457
TaqII	GACCGA	1 cut(s)	1964
TatI	WGTACW	6 cut(s)	74, 832, 1811, 2028, 3658, 4467
TauI	GCSGC	2 cut(s)	2902, 3474
TspGWI	ACGGA	4 cut(s)	1569, 1587, 2490, 4849
Tth111I	GACNNNGTC	1 cut(s)	3703
Van91I	CCANNNNNTGG	2 cut(s)	1983, 4175
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	6 cut(s)	815, 952, 1387, 2877, 3310, 3705
VspI	ATTAAT	1 cut(s)	4635
XagI	CCTNNNNNAGG	1 cut(s)	3224
XbaI	TCTAGA	3 cut(s)	1037, 1897, 4855
XceI	RCATGY	4 cut(s)	223, 1513, 2785, 3922
XcmI	CCANNNNNNNNNTGG	3 cut(s)	559, 1397, 4443
XmaJI	CCTAGG	1 cut(s)	3782
XmiI	GTMKAC	1 cut(s)	3788
XmnI	GAANNNNTTC	2 cut(s)	1561, 2293
ZraI	GACGTC	1 cut(s)	2196
Zsp2I	ATGCAT	3 cut(s)	1372, 2007, 3924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.