Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9394967 .. 9395686

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCAGGAAGTGAATCCCCATTTCAAGATTCCAACATTGAGAGTGATGAATCTGATAAACAAAATCAGCAAGGCAAGCATTCGAAAGGAAAAGAGGTTTTAATCGATGAGTCTGAAGACATGGTTAAACCTTTTGAAGAGTTTCCAGTAAATACTGGGAGCAGGAGGAGATTGGTGCTTAAATTACCAAGACGGGAGTCAAATAAGCTTGTATCTAGAGAAAGCACAGTAAATAATCGTAGTAATGAGGGTGATTTGGTTGACCAATCATATAGAGTACCTCAAGAAGCAAATGAGAATAACACTAGTCCTCAGGTTCCAATGTCCTCCCCAGGTGACGAAAAATGCAGCAAATTTGAAACAGCAGTGAGTGGGCAGTCACAGAGAGTAAAAAATCATTTAAATTTCAAAGGGAGAATTAGTTGGGGAGGGTCCAGAGCACGAACAACAAAGCGCCAGAGATCAGTACTTCGAGAATTCATGTCATTGGATGCACTTGCCAGAGCCAGTGCAGTTGTTGGTCACAATGAAAAAGACTACACAAAACCTGAAAATGATTCTCCTCATTCAGAAAGCCAAAGGTTCAGGGATAAGATGGACACAGTGGCTATAGGGAATGAGAAAACCACTAGGGCTAGTACCTCCGATGGCCTTAATGGTGAAGTCAATGTTAAAGAGCATTCAGATTTTAGTGAATGCAAGGATCGATCAATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

240

Amino Acids

26.81

Weight (kDa)

6.56

Isoelectric Point (pI)

67.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	711
AcsI	RAATTY	3 cut(s)	353, 403, 476
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	3 cut(s)	279, 468, 640
AgsI	TTSAA	4 cut(s)	26, 137, 359, 409
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	711
AoxI	GGCC	1 cut(s)	649
ApeKI	GCWGC	1 cut(s)	348
ApoI	RAATTY	3 cut(s)	353, 403, 476
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	3 cut(s)	263, 347, 671
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	432
AxyI	CCTNAGG	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	2 cut(s)	589, 641
BciT130I	CCWGG	1 cut(s)	333
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	4 cut(s)	216, 306, 630, 636
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	457
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
BmcAI	AGTACT	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	2 cut(s)	318, 433
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	165
BoxI	GACNNNNGTC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	267
Bsa29I	ATCGAT	2 cut(s)	105, 706
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bse1I	ACTGG	3 cut(s)	146, 160, 507
Bse21I	CCTNAGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	333
BseCI	ATCGAT	2 cut(s)	105, 706
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	3 cut(s)	146, 160, 507
BseRI	GAGGAG	2 cut(s)	181, 552
BseXI	GCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	651
BshVI	ATCGAT	2 cut(s)	105, 706
BsiHKAI	GWGCWC	1 cut(s)	442
BsmI	GAATGC	3 cut(s)	79, 679, 701
BsnI	GGCC	1 cut(s)	651
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	461, 703, 707
BspANI	GGCC	1 cut(s)	651
BspCNI	CTCAG	1 cut(s)	325
BspDI	ATCGAT	2 cut(s)	105, 706
BspLI	GGNNCC	2 cut(s)	318, 433
BspPI	GGATC	1 cut(s)	711
BspT104I	TTCGAA	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	146, 160, 507
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	461, 703, 707
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	229, 604
Bst6I	CTCTTC	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	3 cut(s)	464, 706, 710
BstMBI	GATC	3 cut(s)	461, 703, 707
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	333
BstPAI	GACNNNNGTC	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	123
Bsu15I	ATCGAT	2 cut(s)	105, 706
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	651
BsuTUI	ATCGAT	2 cut(s)	105, 706
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	372, 514, 609
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	432
ClaI	ATCGAT	2 cut(s)	105, 706
Csp6I	GTAC	3 cut(s)	278, 467, 639
CviAII	CATG	2 cut(s)	121, 481
CviJI	RGCY	6 cut(s)	208, 506, 576, 608, 635, 651
CviKI_1	RGCY	6 cut(s)	208, 506, 576, 608, 635, 651
CviQI	GTAC	3 cut(s)	278, 467, 639
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	3 cut(s)	463, 705, 709
DpnII	GATC	3 cut(s)	461, 703, 707
DraI	TTTAAA	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	124, 484
FaiI	YATR	5 cut(s)	122, 271, 273, 482, 611
FatI	CATG	2 cut(s)	120, 480
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	4 cut(s)	216, 306, 630, 636
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	651
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	124, 484
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	6 cut(s)	14, 29, 50, 110, 197, 557
HphI	GGTGA	3 cut(s)	263, 347, 671
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	5 cut(s)	55, 115, 571, 646, 685
Hpy188III	TCNNGA	6 cut(s)	6, 26, 216, 284, 435, 473
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	229, 604
HpyCH4V	TGCA	4 cut(s)	348, 494, 512, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	124, 484
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	461, 703, 707
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	4 cut(s)	216, 306, 630, 636
MaeIII	GTNAC	3 cut(s)	335, 378, 521
MalI	GATC	3 cut(s)	463, 705, 709
MboI	GATC	3 cut(s)	461, 703, 707
MboII	GAAGA	2 cut(s)	128, 149
MfeI	CAATTG	1 cut(s)	711
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	6 cut(s)	182, 353, 403, 417, 476, 711
MlyI	GAGTC	2 cut(s)	119, 206
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	9 cut(s)	88, 159, 241, 291, 321, 337, 422, 573, 652
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	6 cut(s)	101, 126, 180, 401, 654, 672
MspR9I	CCNGG	1 cut(s)	333
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	3 cut(s)	79, 679, 701
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	3 cut(s)	461, 703, 707
NlaIII	CATG	2 cut(s)	124, 484
NlaIV	GGNNCC	2 cut(s)	318, 433
NmuCI	GTSAC	3 cut(s)	335, 378, 521
NspV	TTCGAA	1 cut(s)	83
PctI	GAATGC	3 cut(s)	79, 679, 701
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	4 cut(s)	14, 29, 50, 557
PkrI	GCNGC	1 cut(s)	350
PleI	GAGTC	2 cut(s)	118, 205
PpsI	GAGTC	2 cut(s)	118, 205
PshAI	GACNNNNGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	318, 433
PspPI	GGNCC	1 cut(s)	432
RsaI	GTAC	3 cut(s)	279, 468, 640
RsaNI	GTAC	3 cut(s)	278, 467, 639
SaqAI	TTAA	6 cut(s)	101, 126, 180, 401, 654, 672
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	3 cut(s)	461, 703, 707
Sau96I	GGNCC	1 cut(s)	432
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	2 cut(s)	119, 206
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	9 cut(s)	99, 133, 210, 283, 318, 337, 550, 584, 644
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	609
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	1 cut(s)	432
SmiI	ATTTAAAT	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	6 cut(s)	182, 353, 403, 417, 476, 711
SspMI	CTAG	4 cut(s)	216, 306, 630, 636
StyD4I	CCNGG	1 cut(s)	331
SwaI	ATTTAAAT	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	229, 604
TaqI	TCGA	4 cut(s)	83, 105, 472, 706
TasI	AATT	6 cut(s)	182, 353, 403, 417, 476, 711
TatI	WGTACW	1 cut(s)	466
TfiI	GAWTC	4 cut(s)	14, 29, 50, 557
Tru1I	TTAA	6 cut(s)	101, 126, 180, 401, 654, 672
Tru9I	TTAA	6 cut(s)	101, 126, 180, 401, 654, 672
TscAI	CASTG	3 cut(s)	372, 514, 609
TseFI	GTSAC	3 cut(s)	335, 378, 521
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	3 cut(s)	335, 378, 521
TspDTI	ATGAA	3 cut(s)	63, 469, 543
TspRI	CASTG	3 cut(s)	372, 514, 609
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	3 cut(s)	353, 403, 476
XbaI	TCTAGA	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	4 cut(s)	216, 306, 630, 636
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.