Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9391941 .. 9394610

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGAGTGCGATTATCTGGATTCCCAGATCACGATAGATCACATGGAAAAGCTGGTCGTTGGACACGGGCATATCATTTGAAAGTCCCACCTCCACCAATGCCTTCTCAGCCTCCACGAGGAGGCCCTCGCCAGAGGATTCTTCCAACTCCTCGTGGTGTTAATATGATTACCTGGAGTCTTGACAATCGATTTGTCCTTGCTGCTATCATGGATTGCAGAATATGTGTGTGGAATGCTTCTGATGGTAGCTTGGTGCATTCACTGACAGGTCATACTGAATCTACATATGTGCTGGATGTTCATCCTTTCAACCCCAGGATAGCAATGAGTGCTGGCTATGATGGAAAAACAATTGTCTGGGATATATGGGAAGGCATACCTATCCGGACGTTTGAAACTTCCCACTACAAATTGGTAGATGGAAAGTTCTCACCGGATGGGACATCAATTATTCTCTCTGATGATGTTGGCCAATTGTATATATTGGACAGTGGCCAAGGGGAGTCCCAAGATGATGCACAATATGATCAGTTTTTTCTTGGTGATTATCGCCCACTCATTCACGATAGTTTTGGAAATGTTCTTGACCAGGAAACTCAGCTTCCAGCATACCGGCGGAATATGCAAGATCTACTTTGTGACTCAGGCATGATACCGTATGAAGAACCCTACCAGAGTGCATACCAGAAGCGGCGGTTAGGAGCTCTGGGTGCCGAGTGGCGTCCGTCCTCTCTAAGACTTGCTGTTGGGCCTGACTTCAGTCTAGATCCGGATTACCAAATGTTGCCTTTGGCAGACTTGGATATCTTGACTGAGCCTCTACCAGAGTTTTTAGATGCAATGGATTGGGAACCAGAAAATGAAATACGTAGTGATGATACAGATTCAGAGTACCATATTACTGAAGATTATTCTACTGGAGGGGAGCAAGGAAGTTTAAGTTCAAATCCCTCCATCGATCCAGAGTGCAGTGAAGAAAGTGAGGATGAGGATGCTGAAATGGATGGACTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

340

Amino Acids

38.13

Weight (kDa)

4.42

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	52 - 168	2e-13	WDR5 beta-propeller domain
EIF3I	PF24805	52 - 155	3.2e-06	EIF3I
Beta-prop_THOC3	PF25174	53 - 177	1e-15	THOC3 beta-propeller domain
WD40_Prp19	PF24814	53 - 164	1.1e-08	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	53 - 152	8e-08	WDR3 first beta-propeller domain
Beta-prop_WDR75_1st	PF23869	60 - 135	1.4e-06	WD repeat-containing protein 75 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	713
AccIII	TCCGGA	2 cut(s)	387, 772
AciI	CCGC	3 cut(s)	619, 694, 697
AclWI	GGATC	2 cut(s)	764, 956
AcoI	YGGCCR	2 cut(s)	472, 496
AcuI	CTGAAG	2 cut(s)	745, 927
AcyI	GRCGYC	1 cut(s)	724
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	2 cut(s)	119, 122
AgsI	TTSAA	4 cut(s)	82, 313, 398, 948
AjnI	CCWGG	3 cut(s)	173, 317, 591
AluBI	AGCT	4 cut(s)	53, 252, 604, 707
AluI	AGCT	4 cut(s)	53, 252, 604, 707
Alw21I	GWGCWC	1 cut(s)	709
AlwI	GGATC	2 cut(s)	764, 956
Aor13HI	TCCGGA	2 cut(s)	387, 772
AoxI	GGCC	4 cut(s)	124, 472, 496, 752
ApeKI	GCWGC	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspS9I	GGNCC	2 cut(s)	125, 752
AsuHPI	GGTGA	2 cut(s)	426, 557
BalI	TGGCCA	2 cut(s)	474, 498
BanI	GGYRCC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	709
BauI	CACGAG	2 cut(s)	117, 153
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	6 cut(s)	239, 338, 416, 434, 965, 1001
BciT130I	CCWGG	3 cut(s)	175, 319, 593
BclI	TGATCA	1 cut(s)	529
BfaI	CTAG	1 cut(s)	767
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	2 cut(s)	204, 695
BlsI	GCNGC	2 cut(s)	205, 696
Bme1390I	CCNGG	3 cut(s)	175, 319, 593
BmgT120I	GGNCC	2 cut(s)	125, 752
BmiI	GGNNCC	2 cut(s)	715, 855
BmrFI	CCNGG	3 cut(s)	175, 319, 593
BmsI	GCATC	3 cut(s)	508, 829, 985
BoxI	GACNNNNGTC	1 cut(s)	762
BpmI	CTGGAG	2 cut(s)	196, 942
Bsa29I	ATCGAT	2 cut(s)	190, 960
BsaAI	YACGTR	1 cut(s)	872
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	724
BsaJI	CCNNGG	2 cut(s)	317, 499
BsaWI	WCCGGW	3 cut(s)	387, 436, 772
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 122
Bse118I	RCCGGY	1 cut(s)	615
Bse1I	ACTGG	1 cut(s)	925
Bse3DI	GCAATG	2 cut(s)	333, 849
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	2 cut(s)	387, 772
BseBI	CCWGG	3 cut(s)	175, 319, 593
BseCI	ATCGAT	2 cut(s)	190, 960
BseDI	CCNNGG	2 cut(s)	317, 499
BseGI	GGATG	6 cut(s)	304, 304, 445, 994, 1000, 1012
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	119, 122
BseMI	GCAATG	2 cut(s)	333, 849
BseMII	CTCAG	4 cut(s)	122, 614, 660, 807
BseNI	ACTGG	1 cut(s)	925
BseRI	GAGGAG	2 cut(s)	135, 141
BseXI	GCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	991
BshFI	GGCC	4 cut(s)	126, 474, 498, 754
BshNI	GGYRCC	1 cut(s)	713
BshVI	ATCGAT	2 cut(s)	190, 960
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	4 cut(s)	388, 437, 616, 773
BslFI	GGGAC	3 cut(s)	71, 457, 493
BslI	CCNNNNNNNGG	2 cut(s)	119, 122
BsmFI	GGGAC	3 cut(s)	71, 457, 493
BsmI	GAATGC	2 cut(s)	241, 259
BsnI	GGCC	4 cut(s)	126, 474, 498, 754
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp13I	TCCGGA	2 cut(s)	387, 772
Bsp143I	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
BspACI	CCGC	3 cut(s)	619, 694, 697
BspANI	GGCC	4 cut(s)	126, 474, 498, 754
BspCNI	CTCAG	4 cut(s)	121, 613, 659, 808
BspDI	ATCGAT	2 cut(s)	190, 960
BspEI	TCCGGA	2 cut(s)	387, 772
BspLI	GGNNCC	2 cut(s)	715, 855
BspPI	GGATC	2 cut(s)	764, 956
BspT107I	GGYRCC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	333, 849
BsrFI	RCCGGY	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	925
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	2 cut(s)	317, 499
BssMI	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
BssNI	GRCGYC	1 cut(s)	724
BssSI	CACGAG	2 cut(s)	117, 153
BssT1I	CCWWGG	1 cut(s)	499
Bst2BI	CACGAG	2 cut(s)	117, 153
Bst2UI	CCWGG	3 cut(s)	175, 319, 593
Bst4CI	ACNGT	2 cut(s)	494, 660
BstACI	GRCGYC	1 cut(s)	724
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	872
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	5 cut(s)	108, 600, 646, 737, 816
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	6 cut(s)	304, 304, 445, 994, 1000, 1012
BstKTI	GATC	6 cut(s)	31, 41, 532, 634, 772, 964
BstMBI	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 332, 625, 713
BstNI	CCWGG	3 cut(s)	175, 319, 593
BstPAI	GACNNNNGTC	1 cut(s)	762
BstSCI	CCNGG	3 cut(s)	173, 317, 591
BstSNI	TACGTA	1 cut(s)	872
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	631, 769
BstYI	RGATCY	2 cut(s)	631, 769
Bsu15I	ATCGAT	2 cut(s)	190, 960
BsuRI	GGCC	4 cut(s)	126, 474, 498, 754
BsuTUI	ATCGAT	2 cut(s)	190, 960
BtsCI	GGATG	6 cut(s)	304, 304, 445, 994, 1000, 1012
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	3 cut(s)	263, 499, 979
Cac8I	GCNNGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	615
Cfr13I	GGNCC	2 cut(s)	125, 752
ClaI	ATCGAT	2 cut(s)	190, 960
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	1 cut(s)	895
CviAII	CATG	3 cut(s)	44, 211, 652
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	5 cut(s)	108, 600, 646, 737, 816
DpnI	GATC	6 cut(s)	30, 40, 531, 633, 771, 963
DpnII	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
EaeI	YGGCCR	2 cut(s)	472, 496
EciI	GGCGGA	1 cut(s)	634
Ecl136II	GAGCTC	1 cut(s)	707
Eco105I	TACGTA	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	808
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	2 cut(s)	745, 927
EcoICRI	GAGCTC	1 cut(s)	707
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	3 cut(s)	173, 317, 591
EcoRV	GATATC	1 cut(s)	808
EcoT14I	CCWWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	3 cut(s)	47, 214, 655
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	3 cut(s)	71, 457, 493
FatI	CATG	3 cut(s)	43, 210, 651
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	204, 695
FokI	GGATG	5 cut(s)	291, 311, 452, 1001, 1007
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	2 cut(s)	204, 695
FspBI	CTAG	1 cut(s)	767
GluI	GCNGC	2 cut(s)	204, 695
GsuI	CTGGAG	2 cut(s)	196, 942
HaeIII	GGCC	4 cut(s)	126, 474, 498, 754
HapII	CCGG	4 cut(s)	388, 437, 616, 773
HgaI	GACGC	1 cut(s)	713
Hin1I	GRCGYC	1 cut(s)	724
Hin1II	CATG	3 cut(s)	47, 214, 655
HinfI	GANTC	7 cut(s)	21, 139, 178, 281, 506, 644, 887
HpaII	CCGG	4 cut(s)	388, 437, 616, 773
HphI	GGTGA	2 cut(s)	426, 557
Hpy188I	TCNGA	3 cut(s)	244, 463, 892
HpyAV	CCTTC	2 cut(s)	114, 368
HpyCH4III	ACNGT	2 cut(s)	494, 660
HpyCH4IV	ACGT	2 cut(s)	392, 871
HpyCH4V	TGCA	7 cut(s)	219, 259, 521, 628, 683, 842, 972
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 332, 625, 713
HpyF3I	CTNAG	5 cut(s)	108, 600, 646, 737, 816
HpySE526I	ACGT	2 cut(s)	392, 871
Hsp92I	GRCGYC	1 cut(s)	724
Hsp92II	CATG	3 cut(s)	47, 214, 655
Kpn2I	TCCGGA	2 cut(s)	387, 772
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
LmnI	GCTCC	2 cut(s)	704, 928
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	3 cut(s)	508, 829, 985
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	2 cut(s)	392, 871
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	6 cut(s)	30, 40, 531, 633, 771, 963
MboI	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
MboII	GAAGA	4 cut(s)	134, 677, 920, 989
MfeI	CAATTG	2 cut(s)	354, 476
MflI	RGATCY	2 cut(s)	631, 769
MhlI	GDGCHC	1 cut(s)	709
MlsI	TGGCCA	2 cut(s)	474, 498
MluCI	AATT	4 cut(s)	354, 413, 450, 476
MluNI	TGGCCA	2 cut(s)	474, 498
MlyI	GAGTC	3 cut(s)	187, 515, 638
MmeI	TCCRAC	2 cut(s)	41, 170
Mox20I	TGGCCA	2 cut(s)	474, 498
MroI	TCCGGA	2 cut(s)	387, 772
MscI	TGGCCA	2 cut(s)	474, 498
MseI	TTAA	2 cut(s)	162, 941
Msp20I	TGGCCA	2 cut(s)	474, 498
MspI	CCGG	4 cut(s)	388, 437, 616, 773
MspR9I	CCNGG	3 cut(s)	175, 319, 593
MunI	CAATTG	2 cut(s)	354, 476
Mva1269I	GAATGC	2 cut(s)	241, 259
MvaI	CCWGG	3 cut(s)	175, 319, 593
MwoI	GCNNNNNNNGC	4 cut(s)	109, 332, 625, 713
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
NlaIII	CATG	3 cut(s)	47, 214, 655
NlaIV	GGNNCC	2 cut(s)	715, 855
NmeAIII	GCCGAG	1 cut(s)	742
NmuCI	GTSAC	1 cut(s)	641
PctI	GAATGC	2 cut(s)	241, 259
PfeI	GAWTC	4 cut(s)	21, 139, 281, 887
PkrI	GCNGC	2 cut(s)	205, 696
PleI	GAGTC	3 cut(s)	186, 514, 638
PpsI	GAGTC	3 cut(s)	186, 514, 638
Ppu21I	YACGTR	1 cut(s)	872
PshAI	GACNNNNGTC	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	709
Psp6I	CCWGG	3 cut(s)	173, 317, 591
PspGI	CCWGG	3 cut(s)	173, 317, 591
PspN4I	GGNNCC	2 cut(s)	715, 855
PspPI	GGNCC	2 cut(s)	125, 752
PsuI	RGATCY	2 cut(s)	631, 769
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
SacI	GAGCTC	1 cut(s)	709
SaqAI	TTAA	2 cut(s)	162, 941
SatI	GCNGC	2 cut(s)	204, 695
Sau3AI	GATC	6 cut(s)	28, 38, 529, 631, 769, 961
Sau96I	GGNCC	2 cut(s)	125, 752
SchI	GAGTC	3 cut(s)	187, 515, 638
ScrFI	CCNGG	3 cut(s)	175, 319, 593
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	3 cut(s)	508, 829, 985
SnaBI	TACGTA	1 cut(s)	872
Sse9I	AATT	4 cut(s)	354, 413, 450, 476
SsiI	CCGC	3 cut(s)	619, 694, 697
SspMI	CTAG	1 cut(s)	767
SstI	GAGCTC	1 cut(s)	709
StyD4I	CCNGG	3 cut(s)	173, 317, 591
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	494, 660
TaiI	ACGT	2 cut(s)	395, 874
TaqI	TCGA	3 cut(s)	190, 960, 1015
TasI	AATT	4 cut(s)	354, 413, 450, 476
TauI	GCSGC	1 cut(s)	697
TfiI	GAWTC	4 cut(s)	21, 139, 281, 887
Tru1I	TTAA	2 cut(s)	162, 941
Tru9I	TTAA	2 cut(s)	162, 941
TscAI	CASTG	3 cut(s)	270, 499, 979
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	3 cut(s)	293, 678, 879
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	3 cut(s)	270, 499, 979
XagI	CCTNNNNNAGG	1 cut(s)	117
XbaI	TCTAGA	1 cut(s)	766
XspI	CTAG	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.