Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9396319 .. 9397961

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGATAAGTTTCAACTTGGGAATGAAGAACGGGGATCAAGTTCAAGGACGAAAGTTGGTTTGAGGTCTACTAGAAACAGGAGAAGCAGTTATCTTGACATGAGTCCAATGGATAAAAGGAAGCCGCATCAGTCAGGAAAGAAAGTATCATGGTTAATGTTGTCAGCACATGAGGAGAGCTCAAGATATATCCCCCAGTTAGGGGACAAAGTTGTTTATCTGAGACAGGGGCATCAGGAGTATTTCGATCGGGGTGGATTGAGAGAAAACCCACCATGGAGGTTTATAAAGGGGAGAATAAGGGCTGTCGAATTTTGCAATGTCCAAGACCTAGAGTATTCTTCACGTGCAGGGTCTGGGGATAGCTGCTGTAAATTGACGATTCAATTTGTAGATCGTTCTTCTGATGTGTATGGTAAATCTTTTAAGATGACTCTGCCGGAAGTTACTGGTTTCCCAGACTTCATTGTTGAAAGAACTCGCTTTGACTCTTCCATGGAGAGAAATTGGTCGTGTAGGGATCATTGCAAAGTCTGGTGGAAAAATGAGGGCGAGGATGACGGTAAGTGGTGGCATGGCAGGGTTAAGTCTAAACAGTTTAAATCATCAGAGTTCCCAGACAGTCCTTGGGAGATGTACACTGTTCAGTACAAGAGTGATCCTAGTGATGCACAACTACATAGTCCTTGGGAGCTTTTTGATGAAAATACTCAATGGGAGCCGCCTCGCATTGATGATAAAAGCAAAAAGCTGCATTCGGCCTTTGCCAAACTAGAGCGATCAGCCGGAAGTCGTCAGGATCCTTTTGGGGTCGACAAACTGGTGCAACTTCAACAGAAGCCAAAGTTTACAAACTGGTGTGTGGTTCCGATATCTCTTGATGTGATCCAGTCTAGGTTAGAGAACGACTACTATCGAAGCCTGGAAGCGCTGAAGCATGACTTTAAGGTCATGCTGGCAAATGCTGAAACCTATCTCGAGAGCAACGCGGTCAAACGCGCGTCAGATAAAGAGCTTTTAGGGAAATTGAAATGCCTATCAGACTGGTTCACACAGACAATATCATCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

358

Amino Acids

41.69

Weight (kDa)

8.88

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AasI	GACNNNNNNGTC	1 cut(s)	947
AccI	GTMKAC	2 cut(s)	68, 813
AccII	CGCG	3 cut(s)	989, 999, 1001
AciI	CCGC	3 cut(s)	125, 722, 989
AclWI	GGATC	6 cut(s)	43, 528, 653, 794, 807, 880
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	953
AcvI	CACGTG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	638, 650
AfeI	AGCGCT	1 cut(s)	930
AfiI	CCNNNNNNNGG	3 cut(s)	200, 201, 202
AgsI	TTSAA	6 cut(s)	14, 45, 386, 473, 833, 1030
AjnI	CCWGG	1 cut(s)	921
AluBI	AGCT	5 cut(s)	180, 366, 694, 751, 1015
AluI	AGCT	5 cut(s)	180, 366, 694, 751, 1015
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	6 cut(s)	43, 528, 653, 794, 807, 880
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	977
Aor51HI	AGCGCT	1 cut(s)	930
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	2 cut(s)	366, 751
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	931, 1001
AvaI	CYCGRG	1 cut(s)	977
BamHI	GGATCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	182
BbrPI	CACGTG	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	353, 738
BciT130I	CCWGG	1 cut(s)	923
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	5 cut(s)	72, 332, 663, 773, 894
BfoI	RGCGCY	1 cut(s)	932
BisI	GCNGC	4 cut(s)	125, 367, 722, 752
BlsI	GCNGC	4 cut(s)	126, 368, 723, 753
Bme1390I	CCNGG	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	977
BmiI	GGNNCC	3 cut(s)	720, 801, 867
BmrFI	CCNGG	1 cut(s)	923
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	3 cut(s)	136, 241, 658
BmuI	ACTGGG	1 cut(s)	190
BoxI	GACNNNNGTC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuEI	CTTGAG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	275, 495, 626, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 201, 202
Bse1I	ACTGG	6 cut(s)	196, 454, 825, 860, 889, 1049
Bse3DI	GCAATG	2 cut(s)	325, 523
BseBI	CCWGG	1 cut(s)	923
BseDI	CCNNGG	4 cut(s)	275, 495, 626, 686
BseGI	GGATG	2 cut(s)	562, 1064
BseLI	CCNNNNNNNGG	3 cut(s)	200, 201, 202
BseMI	GCAATG	2 cut(s)	325, 523
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	6 cut(s)	196, 454, 825, 860, 889, 1049
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	353, 738
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	3 cut(s)	989, 999, 1001
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	761
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	977
BsiSI	CCGG	2 cut(s)	440, 786
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	200, 201, 202
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	1 cut(s)	761
BsoBI	CYCGRG	1 cut(s)	977
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
Bsp19I	CCATGG	2 cut(s)	275, 495
BspACI	CCGC	3 cut(s)	125, 722, 989
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	3 cut(s)	989, 999, 1001
BspLI	GGNNCC	3 cut(s)	720, 801, 867
BspPI	GGATC	6 cut(s)	43, 528, 653, 794, 807, 880
BsrDI	GCAATG	2 cut(s)	325, 523
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	6 cut(s)	196, 454, 825, 860, 889, 1049
BssECI	CCNNGG	4 cut(s)	275, 495, 626, 686
BssMI	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
BssT1I	CCWWGG	4 cut(s)	275, 495, 626, 686
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	4 cut(s)	563, 597, 623, 643
Bst6I	CTCTTC	1 cut(s)	496
BstAUI	TGTACA	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	2 cut(s)	275, 495
BstF5I	GGATG	2 cut(s)	562, 1064
BstFNI	CGCG	3 cut(s)	989, 999, 1001
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	2 cut(s)	931, 1001
BstKTI	GATC	8 cut(s)	38, 250, 397, 523, 661, 782, 802, 888
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
BstMCI	CGRYCG	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	923
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	921
BstUI	CGCG	3 cut(s)	989, 999, 1001
BstV1I	GCAGC	2 cut(s)	353, 738
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BsuRI	GGCC	1 cut(s)	761
BtgI	CCRYGG	2 cut(s)	275, 495
BtsCI	GGATG	2 cut(s)	562, 1064
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	1 cut(s)	957
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	2 cut(s)	931, 1001
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	2 cut(s)	637, 649
CviAII	CATG	8 cut(s)	100, 150, 170, 276, 496, 575, 938, 952
CviQI	GTAC	2 cut(s)	637, 649
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	8 cut(s)	37, 249, 396, 522, 660, 781, 801, 887
DpnII	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
DraI	TTTAAA	1 cut(s)	601
DrdI	GACNNNNNNGTC	1 cut(s)	947
DseDI	GACNNNNNNGTC	1 cut(s)	947
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	4 cut(s)	275, 495, 626, 686
Eco24I	GRGCYC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	873
Eco47III	AGCGCT	1 cut(s)	930
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	953
Eco72I	CACGTG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	977
EcoICRI	GAGCTC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	921
EcoRV	GATATC	1 cut(s)	873
EcoT14I	CCWWGG	4 cut(s)	275, 495, 626, 686
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	4 cut(s)	275, 495, 626, 686
FaeI	CATG	8 cut(s)	103, 153, 173, 279, 499, 578, 941, 955
FalI	AAGNNNNNCTT	2 cut(s)	926, 958
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	8 cut(s)	99, 149, 169, 275, 495, 574, 937, 951
FblI	GTMKAC	2 cut(s)	68, 813
Fnu4HI	GCNGC	4 cut(s)	125, 367, 722, 752
FokI	GGATG	2 cut(s)	569, 1051
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	4 cut(s)	125, 367, 722, 752
FspBI	CTAG	5 cut(s)	72, 332, 663, 773, 894
GlaI	GCGC	2 cut(s)	930, 1000
GluI	GCNGC	4 cut(s)	125, 367, 722, 752
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	2 cut(s)	440, 786
HgaI	GACGC	1 cut(s)	990
HhaI	GCGC	2 cut(s)	931, 1001
Hin1II	CATG	8 cut(s)	103, 153, 173, 279, 499, 578, 941, 955
Hin6I	GCGC	2 cut(s)	929, 999
HinP1I	GCGC	2 cut(s)	929, 999
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	4 cut(s)	103, 382, 433, 488
HpaII	CCGG	2 cut(s)	440, 786
Hpy166II	GTNNAC	5 cut(s)	69, 639, 814, 849, 1050
Hpy188I	TCNGA	6 cut(s)	222, 406, 610, 870, 1006, 1042
Hpy188III	TCNNGA	8 cut(s)	95, 135, 183, 236, 797, 878, 977, 979
Hpy8I	GTNNAC	5 cut(s)	69, 639, 814, 849, 1050
HpyCH4III	ACNGT	4 cut(s)	563, 597, 623, 643
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	318, 350, 528, 671, 754, 826
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	8 cut(s)	103, 153, 173, 279, 499, 578, 941, 955
HspAI	GCGC	2 cut(s)	929, 999
Kzo9I	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
LmnI	GCTCC	2 cut(s)	691, 718
Lsp1109I	GCAGC	2 cut(s)	353, 738
LweI	GCATC	3 cut(s)	136, 241, 658
MaeI	CTAG	5 cut(s)	72, 332, 663, 773, 894
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	8 cut(s)	37, 249, 396, 522, 660, 781, 801, 887
MboI	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
MboII	GAAGA	4 cut(s)	38, 333, 393, 483
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	5 cut(s)	311, 374, 386, 505, 1025
MlyI	GAGTC	3 cut(s)	112, 427, 482
MnlI	CCTC	6 cut(s)	57, 166, 273, 541, 547, 735
MseI	TTAA	5 cut(s)	155, 426, 585, 600, 945
MspI	CCGG	2 cut(s)	440, 786
MspR9I	CCNGG	1 cut(s)	923
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	923
MvnI	CGCG	3 cut(s)	989, 999, 1001
NcoI	CCATGG	2 cut(s)	275, 495
NdeII	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
NlaIII	CATG	8 cut(s)	103, 153, 173, 279, 499, 578, 941, 955
NlaIV	GGNNCC	3 cut(s)	720, 801, 867
PaeR7I	CTCGAG	1 cut(s)	977
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	126, 368, 723, 753
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	3 cut(s)	111, 427, 482
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
PpsI	GAGTC	3 cut(s)	111, 427, 482
Ppu21I	YACGTR	1 cut(s)	347
PshAI	GACNNNNGTC	1 cut(s)	102
PsiI	TTATAA	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	921
PspCI	CACGTG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	3 cut(s)	720, 801, 867
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	799
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	638, 650
RsaNI	GTAC	2 cut(s)	637, 649
SacI	GAGCTC	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	812
SaqAI	TTAA	5 cut(s)	155, 426, 585, 600, 945
SatI	GCNGC	4 cut(s)	125, 367, 722, 752
Sau3AI	GATC	8 cut(s)	35, 247, 394, 520, 658, 779, 799, 885
SchI	GAGTC	3 cut(s)	112, 427, 482
ScrFI	CCNGG	1 cut(s)	923
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	3 cut(s)	136, 241, 658
Sfr274I	CTCGAG	1 cut(s)	977
SlaI	CTCGAG	1 cut(s)	977
SmlI	CTYRAG	2 cut(s)	181, 977
SmoI	CTYRAG	2 cut(s)	181, 977
Sse9I	AATT	5 cut(s)	311, 374, 386, 505, 1025
SsiI	CCGC	3 cut(s)	125, 722, 989
SspMI	CTAG	5 cut(s)	72, 332, 663, 773, 894
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	921
StyI	CCWWGG	4 cut(s)	275, 495, 626, 686
TaaI	ACNGT	4 cut(s)	563, 597, 623, 643
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	5 cut(s)	246, 309, 813, 916, 978
TasI	AATT	5 cut(s)	311, 374, 386, 505, 1025
TatI	WGTACW	2 cut(s)	636, 648
TauI	GCSGC	2 cut(s)	127, 724
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	5 cut(s)	155, 426, 585, 600, 945
Tru9I	TTAA	5 cut(s)	155, 426, 585, 600, 945
TscAI	CASTG	1 cut(s)	646
TseI	GCWGC	2 cut(s)	366, 751
TspDTI	ATGAA	3 cut(s)	39, 454, 717
TspRI	CASTG	1 cut(s)	646
XapI	RAATTY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XhoI	CTCGAG	1 cut(s)	977
XmiI	GTMKAC	2 cut(s)	68, 813
XspI	CTAG	5 cut(s)	72, 332, 663, 773, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.