Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9395865 .. 9396251

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAAATGGTAGGACGATGGAACAGGGTCCAGTTGTGCCAGAGGATGGTGGAACCCATAAATTTATTCCAGATCATAGATATGATGGTTCACGAGAATCAGACAATCAATCTGATAAGAATGTTATTGCTAGCACACATGAATCTGTCGAATCCAGTTTACAAAAAAACAAAATGTTCAGTGCTGTTTATAGAAGGGTGAAACCACATAGGGGTAGAAGTAACTTAGAAGGTGATAGTGGTGTCAATGGAGAAGGCTGTTCATATACTTCAAATACAAGCAACCACAATATCATTGCTGGAGACATTCAGGATGACACAACTGATGGAGGATGCAAGACATGGTCCATGGGGTTGAAGGCATCTGCATGTGATCGATCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

129

Amino Acids

13.96

Weight (kDa)

5.92

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	47, 212
AgsI	TTSAA	2 cut(s)	273, 358
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	29, 345
AsuHPI	GGTGA	2 cut(s)	211, 245
AsuNHI	GCTAGC	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	29, 345
BauI	CACGAG	1 cut(s)	93
BccI	CCATC	4 cut(s)	13, 41, 80, 320
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	29, 345
BmgT120I	GGNCC	2 cut(s)	29, 345
BmiI	GGNNCC	2 cut(s)	30, 55
BmsI	GCATC	2 cut(s)	323, 371
BmtI	GCTAGC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 212
Bse1I	ACTGG	2 cut(s)	32, 156
Bse3DI	GCAATG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	52, 319, 338
BseLI	CCNNNNNNNGG	2 cut(s)	47, 212
BseMI	GCAATG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	32, 156
BshVI	ATCGAT	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	47, 212
BsmAI	GTCTC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	73, 373, 377
Bsp19I	CCATGG	1 cut(s)	348
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	30, 55
BspOI	GCTAGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	32, 156
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	73, 373, 377
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	226
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	3 cut(s)	52, 319, 338
BstKTI	GATC	3 cut(s)	76, 376, 380
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	3 cut(s)	73, 373, 377
BstNSI	RCATGY	1 cut(s)	372
Bsu15I	ATCGAT	1 cut(s)	376
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	52, 319, 338
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	29, 345
ClaI	ATCGAT	1 cut(s)	376
CviAII	CATG	4 cut(s)	140, 342, 349, 369
CviJI	RGCY	1 cut(s)	258
CviKI_1	RGCY	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	3 cut(s)	75, 375, 379
DpnII	GATC	3 cut(s)	73, 373, 377
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	29, 345
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	143, 345, 352, 372
FatI	CATG	4 cut(s)	139, 341, 348, 368
FokI	GGATG	3 cut(s)	59, 326, 345
FspBI	CTAG	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	321
Hin1II	CATG	4 cut(s)	143, 345, 352, 372
HinfI	GANTC	3 cut(s)	98, 143, 152
HphI	GGTGA	2 cut(s)	211, 245
Hpy166II	GTNNAC	2 cut(s)	92, 161
Hpy188I	TCNGA	2 cut(s)	103, 115
Hpy188III	TCNNGA	3 cut(s)	71, 93, 311
Hpy8I	GTNNAC	2 cut(s)	92, 161
HpyAV	CCTTC	4 cut(s)	189, 224, 248, 352
HpyCH4V	TGCA	2 cut(s)	336, 368
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	143, 345, 352, 372
Kzo9I	GATC	3 cut(s)	73, 373, 377
LpnPI	CCDG	7 cut(s)	11, 45, 54, 84, 169, 285, 296
LweI	GCATC	2 cut(s)	323, 371
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	75, 375, 379
MboI	GATC	3 cut(s)	73, 373, 377
MluCI	AATT	1 cut(s)	62
MnlI	CCTC	2 cut(s)	37, 323
MslI	CAYNNNNRTG	2 cut(s)	81, 367
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	73, 373, 377
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	4 cut(s)	143, 345, 352, 372
NlaIV	GGNNCC	2 cut(s)	30, 55
NspI	RCATGY	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	98, 143, 152
PflFI	GACNNNGTC	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	30, 55
PspPI	GGNCC	2 cut(s)	29, 345
PsyI	GACNNNGTC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	81, 367
Sau3AI	GATC	3 cut(s)	73, 373, 377
Sau96I	GGNCC	2 cut(s)	29, 345
SetI	ASST	1 cut(s)	235
SfaNI	GCATC	2 cut(s)	323, 371
SinI	GGWCC	2 cut(s)	29, 345
SmiMI	CAYNNNNRTG	2 cut(s)	81, 367
Sse9I	AATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	348
TaqI	TCGA	2 cut(s)	150, 376
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	98, 143, 152
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	156, 252
TspRI	CASTG	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	29, 345
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.