Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9384752 .. 9393693

Gene Structure 8942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4380 bp

ATGGAAACTGCATTTTGCTTGGCCAGCTGCCGTGGACATGAAGGAGACATCACGGATCTGGCTGTGAGTTCCAACAATGCTTTGGTGGCATCCTCCTCAAATGACTGTATGATTCGAGTATGGCGCTTGCCAGACGGGCTGCCAATTTCAGTATTGCGAGGACATACTGCAGCTGTTACTGCCATTACATTTAATCCCAGGCCAGGCTCTATGTACCACCTTCTATCTTCATCTGATGATGGAACTTGTAGGATATGGGATGCCAGGAGTTCTCAAGTGAGTCCAAAGATGTACATTCCAAGACCTTCAGATGCTTTAGTTGGGAGAAACAGTGGTCCATCTTCAAGCACTGTTACACAGGACCATCATATCTTCTGTTGTGCATTCAATGCTAATGGAACAGTCTTTGTCACCGGTAGCTCGGACACTCTTGCAAGGGTGTGGACTGCTTCTAAGCCAGGCTCAGATGAGTCAGACCAACCAAATCATGAGATTGATGTGTTATCTGGCCATGAGAATGATGTCAATTACGTACAATTTAGTGGTTGTGCTGTAGTATCTAGATTTTTGGCAGCTGACACCTCAAAGGAAGAGAACGCTCCCAAATTTAAAAATTCGTGGTTCAATCATGACAATATAGTCACTTGTTCTCGCGATGGGAGTGCAATTATCTGGATTCCCAGATCACGAAGATCACATGGAAAAGCTGGTCGTTGGACGCGGGCATATCATTTGAAAGTTCCACCTCCACCAATGCCCCCTCAGCCTCCACGAGGAGGCCCTCGCCAGAGGATTCTTCCAACTCCTCGTGGTGTTAATATGATTACCTGGAGTCTTGACAATCGCTTTGTCCTTGCTGCTATCATGGATTGCAGAATATGTGTGTGGAATGCTTCTGATGGTAGCTTGGTGCATTCACTGACAGGTCATACTGAATCTACATATGTGCTGGATGTTCATCCTTTCAACCCCAGGATAGCAATGAGTGCTGGCTATGACGGAAAAACAATTGTCTGGGATATATGGGAAGGCATACCTATTCGGATATTTGAAACTTCCCACTACAAATTGGTAGATGGAAAGTTCTCGCCGGATGGAACATCAATTGTCCTCTCTGATGATGTTGGCCAATTGTACATATTGGACAGTGGCCAAGGGGAGTCCCAAAATGATGCAAAATATGATCAGTTTTTTCTTGGTGATTATCGCCCACTCGTTCATGATAGCTTTGGAAATGTTCTTGACCAGGAAACTCAGCTTCCAGCATACCGGCGGAATATGCAAGATCTACTTTGTGATTCAGGCATGATACCGTATGAAGAACCCTACCAGAGTGCATACCAGAAGAGGCGGTTAGGAGCTCTGGGTGCTGAGTGGCGTCCTTCCTCTTTAAAACTTGCTGTTGGGCCTGACTTCAGTCTAGATCCAGATTACCAAATTTTGCCTTTGGCAGACTTGGATATGTTGGCTGAACCTCTGCCAGAGTTTTTAGATGCCATGGATTGGGAACCAGAAACTGAATTACGTAGTGATGATACGGATTCAGAGTACCATATTGCTGAAGATTATTCTACTGGAGGGGAGCAAGGAAGTTTAAGTTCAAATCCCTCTATTGATCCAGAGTGCAGTGAAGAAAGTGGGGATGAGGATGCTGAAATGGATGGACATCGATCAAAAAGGAAAAAACAAAAGGCTGACATTGAAGTCATGACTTCTTCTGGGAGGTGTGTCAAAAGAAGGAATTTGGATGAGTGTGCTGGCAATTCATTCAGAAGTAACAGAACAAGGAAATCAAGACATGGACGAAAAGCTTCAAAAAAGAAATGTTCCTCGTCATTGAGACCTCAAAGAGCTGCTGCACGCAATGCTCTTAATCTATTTTCTAAGATTACTGGAAGATCTGCAGATGGAGAAGATGAAGATGGATTGGAAGATGATATGTCAGGAAGTGAATCCCCACTTCAGGATTCAAACATTGAGAGTGATGAATCTGATAAACAAAATCAGCAAGGCAAGCATTTGAAAGGAAAAGAGGTTTTTCTCGATGAGTCTGAGGACATGGCTAAACCTTTTGAACGCCCTGAGTTTCTAGTAAATGCTGGGAGCAGTAGGAGGTTGGTGCTTAAATTGCCAAGACGGGAGTCAAATAAGCTCGTGTCTAGAGAAAGCACAGTACATATTTGTTGTAATGAGGATTTGGTTGATCAATCATATAGAGTGCCTCAAGAAGCAAATGAAAATGATATAAGTCCTCAGGATCCAACTTCCGTTCCGGGGGATAAAAAATGCAGCACATTTGAAACAGTAGTGAGTGGGCAATCACACAAAGTAGAAAATCATTTAGACTTCAAAGGGAGAATTAGTTGGGGAGGGTCCAGAGCACGAACAGCGAAGCGCCAGAGGTCAGGAGAATTCATGTCATTGGATGCACTTGCCAGAGCCAGTGCAGTTGTTGGTCACAATGAAAAAGACTACACAAAACCTGAAAACAATTCTCCTCGTTCAGAAAGCCAAAGGTACAGGGATAAGATGGACACAGTGGCTGTAGTGAATGAGGAAACCACTGGGGCTAGTATCTCTGAAGGCTTTATTGGTGAAACCAATGTTAAAGAGCATTCAGATTTTAGTGAATGCAAGGATCATGATCAATCGCCTAAATCTGTTCACATGGCCCCTTGGGATGCAAGCACTTCCTCTTGCCTTGATAAGGATGGGACTGGTTTCTCTTTCGAACAAAATGAGAAGCTAGTACCTGTCTCAACGAAATTAAGGTTGAGGAGGATTTCAAGGGATCCTAGTCCTTGCAAAGAGGAAATTAACTCTGTGGTAGAGATGGAAAATGGTTGGACGATGGAACAGGGTCCAGTTGTGCCAGAGGATTATGGAACCCATAAATTTATTCCAGATCATAGATATGATGGTTCACGAGAATCAGACAATGAAAATGAATCTGACAAGAATGTTATTGCTGGCACACATGAATCTGCCGAATCCAGTTTACAAAAAAACAAAATGTTCAGTGCTGTTTATAGAAGGGTGAAACCACATAGGGGTAGAAGTAATTCAGAAGGTGATAGTGGTGTTAAGGGAGAAGGCTGTTCGTATACTTCAAATACAAGCAACCACAATATCATTGCTGGAGACATTCAGGATGACACAAATGATGGAGGCCGCAGGACACGGTCCATGGGGTTGAAGGCGTCTGCATGTGATCCAAGTAGTCCAGATCATGATCCTAAGTTGGCGGAAGGACATGAGCCAGGTTATACATTTAGAATTAACCGGAAAAGTTCCATGGACAAGTTTCAACTTGGGAATGAAGAATGGGGATCAAGTTCAAGGACAACAGTTGGGTTGAGGTCTAGTAGAAACAGAAGAAGCAGTTATCTTGACATGAGCCCAATGGATAAAAGGAAGCCGCATCAGTCAGCAAAGAAAGTATCATGGTTAATGTTGTCAACACACGAGGAGAGCTCTAGATATATTCCCCAGATAGGGGACGAAGTTGTTTATCTGAGACAGGGGCATCAAGAGTATTTCGATCGATCATATTTTGGTGGATTGAGAGAAAACCCACCATGGAGGTTTATAAAGGGGAGAATAAGAGCTGTAGAATTTTGCAATGTTCAAGACCTAGAGTATTCTTCACTTGCAGGGTCTGGGGATAGCTGCTGTAAATTGACGCTTCAATTTGTAGATCCTTCTTCTGATGTGTATGGTAAATCTTTTAAAGTGACCCTGCCGGAAGTTACTGGTTTCCCAGACTTCATTGTTGAAAGAACACGCTATGACTCTTCCATAGAGAGAAATTGGTCATGTAGGGATCATTGCAAAGTCTGGTGGAAAAATGAGGGTGAGGATGACGGTAAGTGGTGGCATGGCAGGGTTACATCTAAACGGTCTAAATCGCCCGAGTTCCCAGACAGTCCTTGGGAGATGTACACTGTTCAGTATAAGAGTGATCCTAGTGATACACAGCTGCATAGTCCTTGGGAGCTTTTTGACGAAAATACTCCATGGGAGCCGCCTCGCATTGATGATAAAAGCAAAAAGAAGCTGCATGCGGCCTTTTCCAAACTAGATCGATCAGCCGGAAGTCGCCAGGATCCCTTTGGGGTTGACAAACTGATGCAACTTCAACAGAAGCCAAAGTTTACAAACTGGTGCGTGGTTCCGATATCTCTTGATGTGATCCAGTCTAGGTTAGAGAACGACTACTATCGAAGCCTGGAAGCGCTGAAGCATGACTTTCAGGTTTTGCTGTTAAATGCTGAAACCTATCTCGAGAGCAATGCGGTCAAACGCGCATCAGATAAAGAGCTTTTAGGGAAATTGAAATGCCTATCAGACTGGTTCACAGAGACAATCTCATCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

1460

Amino Acids

163.85

Weight (kDa)

5.69

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	3 - 92	1.5e-13	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	5 - 93	7.7e-16	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	6 - 66	3.9e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	6 - 96	1.7e-07	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	6 - 92	8.8e-09	G protein beta WD-40 repeat protein
WD40	PF00400	6 - 41	1.1e-07	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	6 - 93	2.4e-11	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	7 - 181	6e-15	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	9 - 90	4.8e-07	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	13 - 93	1.7e-11	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	16 - 97	8.3e-12	WDHD1 first WD40 domain
WD40	PF00400	48 - 87	3.7e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	270 - 387	2.8e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	271 - 367	1.6e-06	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	271 - 384	1.5e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	271 - 395	3.9e-14	THOC3 beta-propeller domain
BRWD_AD	PF25313	1159 - 1336	5.9e-59	BRWD/PHIP ancillary domain-like domain
Bromodomain	PF00439	1378 - 1433	4.5e-07	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3590
AasI	GACNNNNNNGTC	2 cut(s)	638, 1703
AccB7I	CCANNNNNTGG	1 cut(s)	1503
AccI	GTMKAC	1 cut(s)	3104
AccII	CGCG	3 cut(s)	654, 721, 4305
AciI	CCGC	9 cut(s)	721, 1273, 1351, 3172, 3245, 3419, 4025, 4064, 4295
AcoI	YGGCCR	4 cut(s)	21, 508, 1126, 1150
AcsI	RAATTY	7 cut(s)	605, 613, 1437, 1741, 2411, 2894, 3614
AcuI	CTGAAG	6 cut(s)	291, 1399, 1581, 1946, 2601, 4259
AcyI	GRCGYC	2 cut(s)	1378, 3200
AfaI	GTAC	9 cut(s)	215, 293, 534, 1136, 1550, 2175, 2519, 2751, 3941
AfeI	AGCGCT	1 cut(s)	4236
AgeI	ACCGGT	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	2 cut(s)	2574, 2606
Alw21I	GWGCWC	3 cut(s)	1363, 2383, 3476
Alw26I	GTCTC	6 cut(s)	39, 1834, 2761, 3135, 3511, 4355
AlwNI	CAGNNNCTG	3 cut(s)	1517, 2543, 3659
Ama87I	CYCGRG	2 cut(s)	3911, 4283
Aor51HI	AGCGCT	1 cut(s)	4236
ApoI	RAATTY	7 cut(s)	605, 613, 1437, 1741, 2411, 2894, 3614
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AsiGI	ACCGGT	1 cut(s)	413
Asp700I	GAANNNNTTC	2 cut(s)	1810, 3061
AspLEI	GCGC	4 cut(s)	126, 2397, 4237, 4307
AspS9I	GGNCC	8 cut(s)	335, 361, 779, 1406, 2373, 2671, 2861, 3183
AsuC2I	CCSGG	1 cut(s)	2274
AsuHPI	GGTGA	6 cut(s)	403, 1211, 2606, 3049, 3083, 3866
AsuII	TTCGAA	1 cut(s)	2730
AvaI	CYCGRG	2 cut(s)	3911, 4283
AvaII	GGWCC	5 cut(s)	335, 361, 2373, 2861, 3183
AxyI	CCTNAGG	1 cut(s)	2253
BalI	TGGCCA	4 cut(s)	23, 510, 1128, 1152
BamHI	GGATCC	3 cut(s)	2257, 2791, 4105
BanII	GRGCYC	3 cut(s)	1363, 3401, 3476
BauI	CACGAG	5 cut(s)	771, 807, 2153, 2925, 3464
Bbv12I	GWGCWC	3 cut(s)	1363, 2383, 3476
BbvCI	CCTCAGC	1 cut(s)	762
BceAI	ACGGC	1 cut(s)	15
BcgI	CGANNNNNNTGC	4 cut(s)	644, 678, 4274, 4308
BclI	TGATCA	3 cut(s)	1183, 2203, 2644
BcnI	CCSGG	1 cut(s)	2274
BcoDI	GTCTC	6 cut(s)	39, 1834, 2761, 3135, 3511, 4355
BfmI	CTRYAG	5 cut(s)	168, 552, 1902, 2544, 3609
BfoI	RGCGCY	3 cut(s)	127, 2398, 4238
BglI	GCCNNNNNGGC	1 cut(s)	136
BglII	AGATCT	2 cut(s)	1285, 1898
Bme18I	GGWCC	5 cut(s)	335, 361, 2373, 2861, 3183
BmeT110I	CYCGRG	2 cut(s)	3911, 4283
BmgT120I	GGNCC	8 cut(s)	335, 361, 779, 1406, 2373, 2671, 2861, 3183
BmrI	ACTGGG	1 cut(s)	2574
BmuI	ACTGGG	1 cut(s)	2574
BoxI	GACNNNNGTC	2 cut(s)	1416, 2140
BplI	GAGNNNNNCTC	3 cut(s)	3458, 3490, 4352
BpmI	CTGGAG	3 cut(s)	850, 1596, 3159
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu14I	TTCGAA	1 cut(s)	2730
BpuEI	CTTGAG	2 cut(s)	258, 2208
BpuMI	CCSGG	1 cut(s)	2274
Bsa29I	ATCGAT	3 cut(s)	1669, 3544, 4084
BsaAI	YACGTR	2 cut(s)	532, 1526
BsaBI	GATNNNNATC	4 cut(s)	957, 1665, 2643, 3231
BsaHI	GRCGYC	2 cut(s)	1378, 3200
BsaI	GGTCTC	1 cut(s)	1834
BsaWI	WCCGGW	2 cut(s)	413, 3282
BsaXI	ACNNNNNCTCC	4 cut(s)	316, 346, 2347, 2377
Bse118I	RCCGGY	2 cut(s)	413, 1269
Bse21I	CCTNAGG	1 cut(s)	2253
Bse3DI	GCAATG	6 cut(s)	987, 1870, 3132, 3628, 3826, 4297
Bse8I	GATNNNNATC	4 cut(s)	957, 1665, 2643, 3231
BseCI	ATCGAT	3 cut(s)	1669, 3544, 4084
BseJI	GATNNNNATC	4 cut(s)	957, 1665, 2643, 3231
BseMI	GCAATG	6 cut(s)	987, 1870, 3132, 3628, 3826, 4297
BseMII	CTCAG	8 cut(s)	477, 776, 1268, 1362, 2043, 2073, 2267, 3506
BseRI	GAGGAG	6 cut(s)	85, 789, 795, 2487, 2791, 3482
BseYI	CCCAGC	1 cut(s)	2099
BsgI	GTGCAG	3 cut(s)	1645, 1842, 2466
Bsh1236I	CGCG	3 cut(s)	654, 721, 4305
Bsh1285I	CGRYCG	1 cut(s)	3544
BshTI	ACCGGT	1 cut(s)	413
BshVI	ATCGAT	3 cut(s)	1669, 3544, 4084
BsiEI	CGRYCG	1 cut(s)	3544
BsiHKAI	GWGCWC	3 cut(s)	1363, 2383, 3476
BsiHKCI	CYCGRG	2 cut(s)	3911, 4283
BsiSI	CCGG	7 cut(s)	414, 1091, 1270, 2273, 3283, 3743, 4092
BslFI	GGGAC	3 cut(s)	1147, 2728, 3512
BsmAI	GTCTC	6 cut(s)	39, 1834, 2761, 3135, 3511, 4355
BsmFI	GGGAC	3 cut(s)	1147, 2728, 3512
BsmI	GAATGC	5 cut(s)	383, 895, 913, 2614, 2636
Bso31I	GGTCTC	1 cut(s)	1834
BsoBI	CYCGRG	2 cut(s)	3911, 4283
Bsp119I	TTCGAA	1 cut(s)	2730
Bsp1286I	GDGCHC	4 cut(s)	1363, 2383, 3401, 3476
Bsp1407I	TGTACA	3 cut(s)	291, 1134, 3939
Bsp19I	CCATGG	5 cut(s)	1497, 3186, 3294, 3578, 4016
Bsp68I	TCGCGA	1 cut(s)	654
BspACI	CCGC	9 cut(s)	721, 1273, 1351, 3172, 3245, 3419, 4025, 4064, 4295
BspCNI	CTCAG	8 cut(s)	476, 775, 1267, 1363, 2044, 2074, 2266, 3507
BspDI	ATCGAT	3 cut(s)	1669, 3544, 4084
BspFNI	CGCG	3 cut(s)	654, 721, 4305
BspHI	TCATGA	6 cut(s)	487, 628, 1219, 1707, 2641, 3229
BspMAI	CTGCAG	2 cut(s)	172, 1906
BspT104I	TTCGAA	1 cut(s)	2730
BspTNI	GGTCTC	1 cut(s)	1834
BsrDI	GCAATG	6 cut(s)	987, 1870, 3132, 3628, 3826, 4297
BsrFI	RCCGGY	2 cut(s)	413, 1269
BsrGI	TGTACA	3 cut(s)	291, 1134, 3939
BssAI	RCCGGY	2 cut(s)	413, 1269
BssNAI	GTATAC	1 cut(s)	3105
BssNI	GRCGYC	2 cut(s)	1378, 3200
BssSI	CACGAG	5 cut(s)	771, 807, 2153, 2925, 3464
BssT1I	CCWWGG	9 cut(s)	1153, 1497, 2675, 3186, 3294, 3578, 3929, 3989, 4016
Bst1107I	GTATAC	1 cut(s)	3105
Bst2BI	CACGAG	5 cut(s)	771, 807, 2153, 2925, 3464
Bst6I	CTCTTC	3 cut(s)	585, 1340, 3799
BstACI	GRCGYC	2 cut(s)	1378, 3200
BstAPI	GCANNNNNTGC	3 cut(s)	389, 986, 1865
BstAUI	TGTACA	3 cut(s)	291, 1134, 3939
BstBAI	YACGTR	2 cut(s)	532, 1526
BstBI	TTCGAA	1 cut(s)	2730
BstDSI	CCRYGG	6 cut(s)	31, 1497, 3186, 3294, 3578, 4016
BstENI	CCTNNNNNAGG	2 cut(s)	771, 2705
BstFNI	CGCG	3 cut(s)	654, 721, 4305
BstH2I	RGCGCY	3 cut(s)	127, 2398, 4238
BstHHI	GCGC	4 cut(s)	126, 2397, 4237, 4307
BstMAI	GTCTC	6 cut(s)	39, 1834, 2761, 3135, 3511, 4355
BstMCI	CGRYCG	1 cut(s)	3544
BstNSI	RCATGY	2 cut(s)	3210, 4064
BstPAI	GACNNNNGTC	2 cut(s)	1416, 2140
BstSFI	CTRYAG	5 cut(s)	168, 552, 1902, 2544, 3609
BstSNI	TACGTA	2 cut(s)	532, 1526
BstUI	CGCG	3 cut(s)	654, 721, 4305
BstX2I	RGATCY	8 cut(s)	55, 1285, 1423, 1898, 2257, 2791, 3697, 4105
BstYI	RGATCY	8 cut(s)	55, 1285, 1423, 1898, 2257, 2791, 3697, 4105
BstZ17I	GTATAC	1 cut(s)	3105
Bsu15I	ATCGAT	3 cut(s)	1669, 3544, 4084
Bsu36I	CCTNAGG	1 cut(s)	2253
BsuTUI	ATCGAT	3 cut(s)	1669, 3544, 4084
BtgI	CCRYGG	6 cut(s)	31, 1497, 3186, 3294, 3578, 4016
BtgZI	GCGATG	1 cut(s)	669
BtsI	GCAGTG	1 cut(s)	1633
BtuMI	TCGCGA	1 cut(s)	654
CaiI	CAGNNNCTG	3 cut(s)	1517, 2543, 3659
CciI	TCATGA	6 cut(s)	487, 628, 1219, 1707, 2641, 3229
CfoI	GCGC	4 cut(s)	126, 2397, 4237, 4307
Cfr10I	RCCGGY	2 cut(s)	413, 1269
Cfr13I	GGNCC	8 cut(s)	335, 361, 779, 1406, 2373, 2671, 2861, 3183
ClaI	ATCGAT	3 cut(s)	1669, 3544, 4084
CseI	GACGC	4 cut(s)	727, 1367, 3189, 3691
Csp6I	GTAC	9 cut(s)	214, 292, 533, 1135, 1549, 2174, 2518, 2750, 3940
CspAI	ACCGGT	1 cut(s)	413
CviQI	GTAC	9 cut(s)	214, 292, 533, 1135, 1549, 2174, 2518, 2750, 3940
DraI	TTTAAA	3 cut(s)	610, 1392, 3730
DrdI	GACNNNNNNGTC	2 cut(s)	638, 1703
DseDI	GACNNNNNNGTC	2 cut(s)	638, 1703
EaeI	YGGCCR	4 cut(s)	21, 508, 1126, 1150
Eam1104I	CTCTTC	3 cut(s)	585, 1340, 3799
EarI	CTCTTC	3 cut(s)	585, 1340, 3799
EciI	GGCGGA	2 cut(s)	1288, 3260
Ecl136II	GAGCTC	2 cut(s)	1361, 3474
Eco105I	TACGTA	2 cut(s)	532, 1526
Eco130I	CCWWGG	9 cut(s)	1153, 1497, 2675, 3186, 3294, 3578, 3929, 3989, 4016
Eco24I	GRGCYC	3 cut(s)	1363, 3401, 3476
Eco31I	GGTCTC	1 cut(s)	1834
Eco32I	GATATC	1 cut(s)	4179
Eco47I	GGWCC	5 cut(s)	335, 361, 2373, 2861, 3183
Eco47III	AGCGCT	1 cut(s)	4236
Eco53kI	GAGCTC	2 cut(s)	1361, 3474
Eco57I	CTGAAG	6 cut(s)	291, 1399, 1581, 1946, 2601, 4259
Eco81I	CCTNAGG	1 cut(s)	2253
Eco88I	CYCGRG	2 cut(s)	3911, 4283
EcoICRI	GAGCTC	2 cut(s)	1361, 3474
EcoNI	CCTNNNNNAGG	2 cut(s)	771, 2705
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	2411
EcoRV	GATATC	1 cut(s)	4179
EcoT14I	CCWWGG	9 cut(s)	1153, 1497, 2675, 3186, 3294, 3578, 3929, 3989, 4016
EcoT38I	GRGCYC	3 cut(s)	1363, 3401, 3476
ErhI	CCWWGG	9 cut(s)	1153, 1497, 2675, 3186, 3294, 3578, 3929, 3989, 4016
FalI	AAGNNNNNCTT	4 cut(s)	1275, 1307, 4232, 4264
FaqI	GGGAC	3 cut(s)	1147, 2728, 3512
FauI	CCCGC	1 cut(s)	714
FauNDI	CATATG	1 cut(s)	943
FbaI	TGATCA	3 cut(s)	1183, 2203, 2644
FblI	GTMKAC	1 cut(s)	3104
FriOI	GRGCYC	3 cut(s)	1363, 3401, 3476
GlaI	GCGC	4 cut(s)	125, 2396, 4236, 4306
GsaI	CCCAGC	1 cut(s)	2103
GsuI	CTGGAG	3 cut(s)	850, 1596, 3159
HaeII	RGCGCY	3 cut(s)	127, 2398, 4238
HapII	CCGG	7 cut(s)	414, 1091, 1270, 2273, 3283, 3743, 4092
HgaI	GACGC	4 cut(s)	727, 1367, 3189, 3691
HhaI	GCGC	4 cut(s)	126, 2397, 4237, 4307
Hin1I	GRCGYC	2 cut(s)	1378, 3200
Hin6I	GCGC	4 cut(s)	124, 2395, 4235, 4305
HinP1I	GCGC	4 cut(s)	124, 2395, 4235, 4305
HincII	GTYRAC	2 cut(s)	3459, 4120
HindII	GTYRAC	2 cut(s)	3459, 4120
HindIII	AAGCTT	1 cut(s)	1809
HpaII	CCGG	7 cut(s)	414, 1091, 1270, 2273, 3283, 3743, 4092
HphI	GGTGA	6 cut(s)	403, 1211, 2606, 3049, 3083, 3866
HpyCH4IV	ACGT	2 cut(s)	531, 1525
HpySE526I	ACGT	2 cut(s)	531, 1525
Hsp92I	GRCGYC	2 cut(s)	1378, 3200
HspAI	GCGC	4 cut(s)	124, 2395, 4235, 4305
Ksp22I	TGATCA	3 cut(s)	1183, 2203, 2644
LmnI	GCTCC	6 cut(s)	604, 1358, 1582, 2103, 3994, 4021
MaeII	ACGT	2 cut(s)	531, 1525
MaeIII	GTNAC	9 cut(s)	175, 352, 409, 640, 1775, 2456, 3733, 3748, 3886
MfeI	CAATTG	3 cut(s)	1008, 1104, 1130
MflI	RGATCY	8 cut(s)	55, 1285, 1423, 1898, 2257, 2791, 3697, 4105
MhlI	GDGCHC	4 cut(s)	1363, 2383, 3401, 3476
MlsI	TGGCCA	4 cut(s)	23, 510, 1128, 1152
MluNI	TGGCCA	4 cut(s)	23, 510, 1128, 1152
MlyI	GAGTC	7 cut(s)	289, 479, 841, 1169, 2057, 2150, 3785
MmeI	TCCRAC	5 cut(s)	96, 695, 824, 2285, 2825
Mox20I	TGGCCA	4 cut(s)	23, 510, 1128, 1152
MroXI	GAANNNNTTC	2 cut(s)	1810, 3061
MscI	TGGCCA	4 cut(s)	23, 510, 1128, 1152
MslI	CAYNNNNRTG	2 cut(s)	516, 2913
Msp20I	TGGCCA	4 cut(s)	23, 510, 1128, 1152
MspA1I	CMGCKG	4 cut(s)	27, 173, 575, 3979
MspI	CCGG	7 cut(s)	414, 1091, 1270, 2273, 3283, 3743, 4092
MunI	CAATTG	3 cut(s)	1008, 1104, 1130
Mva1269I	GAATGC	5 cut(s)	383, 895, 913, 2614, 2636
MvnI	CGCG	3 cut(s)	654, 721, 4305
NciI	CCSGG	1 cut(s)	2274
NcoI	CCATGG	5 cut(s)	1497, 3186, 3294, 3578, 4016
NdeI	CATATG	1 cut(s)	943
NmuCI	GTSAC	4 cut(s)	409, 640, 2456, 3733
NruI	TCGCGA	1 cut(s)	654
NspI	RCATGY	2 cut(s)	3210, 4064
NspV	TTCGAA	1 cut(s)	2730
PaeI	GCATGC	1 cut(s)	4064
PaeR7I	CTCGAG	1 cut(s)	4283
PagI	TCATGA	6 cut(s)	487, 628, 1219, 1707, 2641, 3229
PctI	GAATGC	5 cut(s)	383, 895, 913, 2614, 2636
PdmI	GAANNNNTTC	2 cut(s)	1810, 3061
PflFI	GACNNNGTC	1 cut(s)	3181
PflMI	CCANNNNNTGG	1 cut(s)	1503
PinAI	ACCGGT	1 cut(s)	413
Ple19I	CGATCG	1 cut(s)	3544
PleI	GAGTC	7 cut(s)	288, 478, 840, 1168, 2056, 2149, 3785
PpsI	GAGTC	7 cut(s)	288, 478, 840, 1168, 2056, 2149, 3785
Ppu21I	YACGTR	2 cut(s)	532, 1526
PshAI	GACNNNNGTC	2 cut(s)	1416, 2140
PsiI	TTATAA	1 cut(s)	3590
Psp124BI	GAGCTC	2 cut(s)	1363, 3476
PspFI	CCCAGC	1 cut(s)	2099
PspPI	GGNCC	8 cut(s)	335, 361, 779, 1406, 2373, 2671, 2861, 3183
PstI	CTGCAG	2 cut(s)	172, 1906
PstNI	CAGNNNCTG	3 cut(s)	1517, 2543, 3659
PsuI	RGATCY	8 cut(s)	55, 1285, 1423, 1898, 2257, 2791, 3697, 4105
PsyI	GACNNNGTC	1 cut(s)	3181
PvuI	CGATCG	1 cut(s)	3544
PvuII	CAGCTG	4 cut(s)	27, 173, 575, 3979
RruI	TCGCGA	1 cut(s)	654
RsaI	GTAC	9 cut(s)	215, 293, 534, 1136, 1550, 2175, 2519, 2751, 3941
RsaNI	GTAC	9 cut(s)	214, 292, 533, 1135, 1549, 2174, 2518, 2750, 3940
RseI	CAYNNNNRTG	2 cut(s)	516, 2913
SacI	GAGCTC	2 cut(s)	1363, 3476
Sau96I	GGNCC	8 cut(s)	335, 361, 779, 1406, 2373, 2671, 2861, 3183
SchI	GAGTC	7 cut(s)	289, 479, 841, 1169, 2057, 2150, 3785
SduI	GDGCHC	4 cut(s)	1363, 2383, 3401, 3476
SfcI	CTRYAG	5 cut(s)	168, 552, 1902, 2544, 3609
Sfr274I	CTCGAG	1 cut(s)	4283
SfuI	TTCGAA	1 cut(s)	2730
SinI	GGWCC	5 cut(s)	335, 361, 2373, 2861, 3183
SlaI	CTCGAG	1 cut(s)	4283
SmiMI	CAYNNNNRTG	2 cut(s)	516, 2913
SmlI	CTYRAG	3 cut(s)	273, 2223, 4283
SmoI	CTYRAG	3 cut(s)	273, 2223, 4283
SnaBI	TACGTA	2 cut(s)	532, 1526
SphI	GCATGC	1 cut(s)	4064
SsiI	CCGC	9 cut(s)	721, 1273, 1351, 3172, 3245, 3419, 4025, 4064, 4295
SstI	GAGCTC	2 cut(s)	1363, 3476
StyI	CCWWGG	9 cut(s)	1153, 1497, 2675, 3186, 3294, 3578, 3929, 3989, 4016
TaiI	ACGT	2 cut(s)	534, 1528
TaqI	TCGA	9 cut(s)	115, 1669, 2043, 2730, 3540, 3544, 4084, 4222, 4284
TatI	WGTACW	4 cut(s)	291, 1134, 2173, 3939
TauI	GCSGC	4 cut(s)	3174, 3421, 4027, 4067
TseFI	GTSAC	4 cut(s)	409, 640, 2456, 3733
Tsp45I	GTSAC	4 cut(s)	409, 640, 2456, 3733
TspGWI	ACGGA	4 cut(s)	68, 1014, 1553, 2257
Tth111I	GACNNNGTC	1 cut(s)	3181
Van91I	CCANNNNNTGG	1 cut(s)	1503
VpaK11BI	GGWCC	5 cut(s)	335, 361, 2373, 2861, 3183
XagI	CCTNNNNNAGG	2 cut(s)	771, 2705
XapI	RAATTY	7 cut(s)	605, 613, 1437, 1741, 2411, 2894, 3614
XbaI	TCTAGA	4 cut(s)	560, 1420, 2159, 3476
XceI	RCATGY	2 cut(s)	3210, 4064
XcmI	CCANNNNNNNNNTGG	3 cut(s)	79, 3927, 4109
XhoI	CTCGAG	1 cut(s)	4283
XmiI	GTMKAC	1 cut(s)	3104
XmnI	GAANNNNTTC	2 cut(s)	1810, 3061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.