Rorug04G0198300

Bromodomain and WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
34527719 .. 34528978
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0198300.1

Sequence Viewer

Length: 1260 bp
ATGCCGATGCAAGCACCACCGCCAAAGAAGGATTGGTTTTTGTACTTGATGACGGACGATCGAATATGCCGTCTAAATATTGATGAATTCTGCAAAAGGAATTCTCCAAAGCCTCAGTTTGAAGTTGTGCATGATTATTATCCTGATGGTGACTATCGTCTAAAGACAACTATTCCGCAGGGAATGCAACCTATAGTTGTGGGTTCCAAAGTGTATATGTTGGGGGGTAAATTCACAAGAACGTGTAACCCTGAAATAAAGGATTCTGATTCTGATGATGATTCCGGTGGCAGTGAAGTATATAATTCTGAAAATGATTATCGTGATGACCGTGAAAGGGTACGCCGGCATGATGATTCTCGTGTGCCCAATTTAGATGTTTTTGCGTTTGATCCTAATGCTTCAGAGGGTCCAACCATCAGTCTCTGCAACGACCGTACCATTCCAAGGAGGTTAATTGATCCGAGATTGATTGATCCAAAGACCTTGTCTGGTCCTAAAGTTTTCACCCTGGAGGACAAAATCTATGTTATGGCCAGAACATCATACTTGGGCGATGAGGAAGATATGGATCATCATCCACCCCTTTTCAAGGTTTTTGATCCCCTTCACCAAATTTGGAAAGAGCTCCCCCGTCCTCCCTACTGTGATAACTCATTAAGTTTATATCGTCACTCTGCTTGGGGTCACAAGCTTGTAACTCGCAATACAAAGTCGGGTTTAAACCTTTTTGACATTCACCAAGAGAAATGGGAACAATGGCCAGAGAAAAAGGAGGAAGAGGAGGACGAAGGGAACAACCAGTCTGTGTTTATGGCTGTTGTAGAATTTGAGGGCTTTTTAATTGGTGTAAAATACCATGAGCTCACTGCTTATCAGTTGGATCCGAATGGTATCCCCAAGCTGTTTCGAGACCTACATGAGCTTCAGGGGATATTCTGTCCTTTTTTACTCGTCAGTAACTGTGTTATGGGCAAGTGTGATGGTGGCCGAATGTGGTTGGTGTACACCGGCAAGGATCTTATGGGTTTTTATCATACACGTGTAGCTGTGTTTCAAGTTTACATCTCCGACGATCTTGATGGCAATCCGGTCCTCTCCACCGAACTCGAGGCTGCGGAGTTTTATTTCTTCCAAAATAGTTATGCTACCCGTTCCTCATGTGCAGCTTTTTCCATGTGCCATCATTCAAACAATCGTGATATTGAGGAGAAAAACTTATGTGGGACAATTGTAGCACATGATCATCCTCGAGGGTGA

Protein Analysis

419

Amino Acids

48.45

Weight (kDa)

5.24

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 165 - 261 3.4e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1251
AciI CCGC 3 cut(s) 20, 176, 1118
AclWI GGATC 8 cut(s) 386, 455, 470, 579, 596, 878, 891, 1026
AcoI YGGCCR 3 cut(s) 534, 761, 988
AcsI RAATTY 5 cut(s) 86, 100, 230, 615, 827
AcuI CTGAAG 2 cut(s) 387, 911
AcvI CACGTG 1 cut(s) 1043
AfaI GTAC 4 cut(s) 44, 342, 439, 1007
AfiI CCNNNNNNNGG 3 cut(s) 337, 447, 592
AflIII ACRYGT 3 cut(s) 242, 1040, 1042
AgsI TTSAA 4 cut(s) 122, 592, 1058, 1191
AjnI CCWGG 1 cut(s) 510
AluBI AGCT 7 cut(s) 628, 694, 865, 904, 925, 1049, 1169
AluI AGCT 7 cut(s) 628, 694, 865, 904, 925, 1049, 1169
Alw21I GWGCWC 2 cut(s) 630, 867
Alw26I GTCTC 2 cut(s) 428, 906
AlwI GGATC 8 cut(s) 386, 455, 470, 579, 596, 878, 891, 1026
AlwNI CAGNNNCTG 2 cut(s) 426, 963
Ama87I CYCGRG 2 cut(s) 1109, 1251
AoxI GGCC 3 cut(s) 534, 761, 988
ApeKI GCWGC 2 cut(s) 1115, 1166
ApoI RAATTY 5 cut(s) 86, 100, 230, 615, 827
ArsI GACNNNNNNTTYG 4 cut(s) 55, 87, 473, 505
AspS9I GGNCC 3 cut(s) 410, 494, 1093
AsuHPI GGTGA 4 cut(s) 161, 499, 602, 731
AvaI CYCGRG 2 cut(s) 1109, 1251
AvaII GGWCC 3 cut(s) 410, 494, 1093
BaeGI GKGCMC 1 cut(s) 369
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BalI TGGCCA 2 cut(s) 536, 763
BamHI GGATCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 630, 867
BauI CACGAG 1 cut(s) 360
BbrPI CACGTG 1 cut(s) 1043
Bbv12I GWGCWC 2 cut(s) 630, 867
BbvI GCAGC 2 cut(s) 1102, 1178
BccI CCATC 5 cut(s) 140, 425, 977, 1076, 1191
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 512
BciVI GTATCC 1 cut(s) 905
BclI TGATCA 1 cut(s) 1243
BcoDI GTCTC 2 cut(s) 428, 906
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 2 cut(s) 1116, 1167
BlsI GCNGC 2 cut(s) 1117, 1168
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 3 cut(s) 410, 494, 1093
BmeT110I CYCGRG 2 cut(s) 1109, 1251
BmgT120I GGNCC 3 cut(s) 410, 494, 1093
BmiI GGNNCC 3 cut(s) 205, 411, 885
BmrFI CCNGG 1 cut(s) 512
BoxI GACNNNNGTC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 533
BsaAI YACGTR 1 cut(s) 1043
BsaBI GATNNNNATC 4 cut(s) 138, 570, 576, 1086
BsaI GGTCTC 1 cut(s) 906
BsaJI CCNNGG 2 cut(s) 446, 510
BsaWI WCCGGW 2 cut(s) 284, 1090
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 447, 592
Bse118I RCCGGY 2 cut(s) 345, 1010
Bse1I ACTGG 1 cut(s) 802
Bse8I GATNNNNATC 4 cut(s) 138, 570, 576, 1086
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 2 cut(s) 446, 510
BseGI GGATG 2 cut(s) 577, 1246
BseJI GATNNNNATC 4 cut(s) 138, 570, 576, 1086
BseLI CCNNNNNNNGG 3 cut(s) 337, 447, 592
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 2 cut(s) 797, 1223
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 2 cut(s) 1102, 1178
BsgI GTGCAG 1 cut(s) 1185
Bsh1285I CGRYCG 2 cut(s) 61, 436
BshFI GGCC 3 cut(s) 536, 763, 990
BsiEI CGRYCG 2 cut(s) 61, 436
BsiHKAI GWGCWC 2 cut(s) 630, 867
BsiHKCI CYCGRG 2 cut(s) 1109, 1251
BsiSI CCGG 4 cut(s) 285, 346, 1011, 1091
BslFI GGGAC 1 cut(s) 1240
BslI CCNNNNNNNGG 3 cut(s) 337, 447, 592
BsmAI GTCTC 2 cut(s) 428, 906
BsmFI GGGAC 1 cut(s) 1240
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 3 cut(s) 536, 763, 990
Bso31I GGTCTC 1 cut(s) 906
BsoBI CYCGRG 2 cut(s) 1109, 1251
Bsp1286I GDGCHC 3 cut(s) 369, 630, 867
Bsp1407I TGTACA 1 cut(s) 1005
BspACI CCGC 3 cut(s) 20, 176, 1118
BspANI GGCC 3 cut(s) 536, 763, 990
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 205, 411, 885
BspPI GGATC 8 cut(s) 386, 455, 470, 579, 596, 878, 891, 1026
BspTNI GGTCTC 1 cut(s) 906
BsrFI RCCGGY 2 cut(s) 345, 1010
BsrGI TGTACA 1 cut(s) 1005
BsrI ACTGG 1 cut(s) 802
BssAI RCCGGY 2 cut(s) 345, 1010
BssECI CCNNGG 2 cut(s) 446, 510
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 4 cut(s) 332, 437, 647, 965
Bst6I CTCTTC 1 cut(s) 774
BstAPI GCANNNNNTGC 1 cut(s) 184
BstAUI TGTACA 1 cut(s) 1005
BstBAI YACGTR 1 cut(s) 1043
BstC8I GCNNGC 2 cut(s) 12, 347
BstDEI CTNAG 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 2 cut(s) 577, 1246
BstMAI GTCTC 2 cut(s) 428, 906
BstMCI CGRYCG 2 cut(s) 61, 436
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 512
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 510
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 1102, 1178
BstX2I RGATCY 2 cut(s) 883, 1018
BstYI RGATCY 2 cut(s) 883, 1018
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 3 cut(s) 536, 763, 990
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 2 cut(s) 577, 1246
BtsI GCAGTG 2 cut(s) 298, 867
BtsIMutI CAGTG 2 cut(s) 298, 867
Cac8I GCNNGC 2 cut(s) 12, 347
CaiI CAGNNNCTG 2 cut(s) 426, 963
Cfr10I RCCGGY 2 cut(s) 345, 1010
Cfr13I GGNCC 3 cut(s) 410, 494, 1093
Csp6I GTAC 4 cut(s) 43, 341, 438, 1006
CviAII CATG 7 cut(s) 131, 350, 860, 920, 1161, 1177, 1241
CviQI GTAC 4 cut(s) 43, 341, 438, 1006
DdeI CTNAG 1 cut(s) 114
DraI TTTAAA 1 cut(s) 723
EaeI YGGCCR 3 cut(s) 534, 761, 988
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
Ecl136II GAGCTC 2 cut(s) 628, 865
Eco130I CCWWGG 1 cut(s) 446
Eco24I GRGCYC 2 cut(s) 630, 867
Eco31I GGTCTC 1 cut(s) 906
Eco47I GGWCC 3 cut(s) 410, 494, 1093
Eco53kI GAGCTC 2 cut(s) 628, 865
Eco57I CTGAAG 2 cut(s) 387, 911
Eco72I CACGTG 1 cut(s) 1043
Eco88I CYCGRG 2 cut(s) 1109, 1251
EcoICRI GAGCTC 2 cut(s) 628, 865
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRI GAATTC 2 cut(s) 86, 100
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 2 cut(s) 630, 867
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 7 cut(s) 134, 353, 863, 923, 1164, 1180, 1244
FaqI GGGAC 1 cut(s) 1240
FatI CATG 7 cut(s) 130, 349, 859, 919, 1160, 1176, 1240
FbaI TGATCA 1 cut(s) 1243
Fnu4HI GCNGC 2 cut(s) 1116, 1167
FokI GGATG 2 cut(s) 564, 1233
FriOI GRGCYC 2 cut(s) 630, 867
Fsp4HI GCNGC 2 cut(s) 1116, 1167
GluI GCNGC 2 cut(s) 1116, 1167
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 3 cut(s) 536, 763, 990
HapII CCGG 4 cut(s) 285, 346, 1011, 1091
Hin1II CATG 7 cut(s) 134, 353, 863, 923, 1164, 1180, 1244
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 4 cut(s) 263, 269, 281, 356
HpaII CCGG 4 cut(s) 285, 346, 1011, 1091
HphI GGTGA 4 cut(s) 161, 499, 602, 731
Hpy166II GTNNAC 3 cut(s) 1006, 1008, 1063
Hpy188I TCNGA 7 cut(s) 268, 274, 310, 406, 465, 888, 1072
Hpy188III TCNNGA 5 cut(s) 143, 323, 911, 1079, 1199
Hpy8I GTNNAC 3 cut(s) 1006, 1008, 1063
Hpy99I CGWCG 1 cut(s) 1076
HpyAV CCTTC 3 cut(s) 22, 617, 785
HpyCH4III ACNGT 4 cut(s) 332, 437, 647, 965
HpyCH4IV ACGT 2 cut(s) 242, 1042
HpyCH4V TGCA 6 cut(s) 10, 93, 130, 187, 429, 1166
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 242, 1042
Hsp92II CATG 7 cut(s) 134, 353, 863, 923, 1164, 1180, 1244
KroI GCCGGC 1 cut(s) 345
KroNI GCCGGC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 1243
LmnI GCTCC 1 cut(s) 633
Lsp1109I GCAGC 2 cut(s) 1102, 1178
MaeII ACGT 2 cut(s) 242, 1042
MaeIII GTNAC 6 cut(s) 149, 245, 671, 686, 697, 959
MboII GAAGA 3 cut(s) 575, 791, 1123
MfeI CAATTG 1 cut(s) 1230
MflI RGATCY 2 cut(s) 883, 1018
MhlI GDGCHC 3 cut(s) 369, 630, 867
MlsI TGGCCA 2 cut(s) 536, 763
MluNI TGGCCA 2 cut(s) 536, 763
MmeI TCCRAC 3 cut(s) 437, 861, 1095
Mox20I TGGCCA 2 cut(s) 536, 763
MroNI GCCGGC 1 cut(s) 345
MscI TGGCCA 2 cut(s) 536, 763
MseI TTAA 4 cut(s) 455, 659, 722, 842
MslI CAYNNNNRTG 1 cut(s) 1041
Msp20I TGGCCA 2 cut(s) 536, 763
MspI CCGG 4 cut(s) 285, 346, 1011, 1091
MspR9I CCNGG 1 cut(s) 512
MssI GTTTAAAC 1 cut(s) 723
MunI CAATTG 1 cut(s) 1230
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 184
NaeI GCCGGC 1 cut(s) 347
NgoMIV GCCGGC 1 cut(s) 345
NlaIII CATG 7 cut(s) 134, 353, 863, 923, 1164, 1180, 1244
NlaIV GGNNCC 3 cut(s) 205, 411, 885
NmuCI GTSAC 3 cut(s) 149, 671, 686
PaeR7I CTCGAG 2 cut(s) 1109, 1251
PcsI WCGNNNNNNNCGW 2 cut(s) 67, 328
PctI GAATGC 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 263, 269, 281, 356
PflFI GACNNNGTC 1 cut(s) 487
PkrI GCNGC 2 cut(s) 1117, 1168
Ple19I CGATCG 1 cut(s) 61
PmaCI CACGTG 1 cut(s) 1043
PmeI GTTTAAAC 1 cut(s) 723
PmlI CACGTG 1 cut(s) 1043
Ppu21I YACGTR 1 cut(s) 1043
PshAI GACNNNNGTC 1 cut(s) 156
Psp124BI GAGCTC 2 cut(s) 630, 867
Psp6I CCWGG 1 cut(s) 510
PspCI CACGTG 1 cut(s) 1043
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 3 cut(s) 205, 411, 885
PspPI GGNCC 3 cut(s) 410, 494, 1093
PspXI VCTCGAGB 2 cut(s) 1109, 1251
PstNI CAGNNNCTG 2 cut(s) 426, 963
PsuI RGATCY 2 cut(s) 883, 1018
PsyI GACNNNGTC 1 cut(s) 487
PvuI CGATCG 1 cut(s) 61
RsaI GTAC 4 cut(s) 44, 342, 439, 1007
RsaNI GTAC 4 cut(s) 43, 341, 438, 1006
RseI CAYNNNNRTG 1 cut(s) 1041
SacI GAGCTC 2 cut(s) 630, 867
SaqAI TTAA 4 cut(s) 455, 659, 722, 842
SatI GCNGC 2 cut(s) 1116, 1167
Sau96I GGNCC 3 cut(s) 410, 494, 1093
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 3 cut(s) 369, 630, 867
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 2 cut(s) 1109, 1251
SinI GGWCC 3 cut(s) 410, 494, 1093
SlaI CTCGAG 2 cut(s) 1109, 1251
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 1109, 1251
SmoI CTYRAG 2 cut(s) 1109, 1251
SsiI CCGC 3 cut(s) 20, 176, 1118
SspI AATATT 1 cut(s) 79
SstI GAGCTC 2 cut(s) 630, 867
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 4 cut(s) 332, 437, 647, 965
TaiI ACGT 2 cut(s) 245, 1045
TaqI TCGA 4 cut(s) 61, 910, 1110, 1252
TatI WGTACW 2 cut(s) 42, 1005
TfiI GAWTC 4 cut(s) 263, 269, 281, 356
Tru1I TTAA 4 cut(s) 455, 659, 722, 842
Tru9I TTAA 4 cut(s) 455, 659, 722, 842
TscAI CASTG 2 cut(s) 298, 874
TseFI GTSAC 3 cut(s) 149, 671, 686
TseI GCWGC 2 cut(s) 1115, 1166
Tsp45I GTSAC 3 cut(s) 149, 671, 686
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 298, 874
Tth111I GACNNNGTC 1 cut(s) 487
VpaK11BI GGWCC 3 cut(s) 410, 494, 1093
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 5 cut(s) 86, 100, 230, 615, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XhoI CTCGAG 2 cut(s) 1109, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.