Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

34523375 .. 34525552

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0198200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGTCGATGAAGAAGGATATGTTCTTGTGCTTGAATATGAACGACCGACTTTTGGGTCTAAATCTTAGAGAGTTCAGAGAAAGATACTCTTCCAAGCCTGAGTTTGAAGTTGTTCAGGTTTTGAATTATCCGAGCGGCCGTCTTCCAGGTACAAATTCCGATATCGCAAAGACAGATTGTATGACTGTGTGTAATTCCAACTTGTATATGATGAGGGTAACTGAAAATCACCGCGGGTCTCGTAATTTTGAGTTGGATGTTTATTCCTTTGATCCCGCTGGGGCAGATGACTGTAAATCCATCCGTCTATGTGACAAAAGTGCCACACCTAGATTGATGTATAGTAATCGTCCTATAGTGTTCACCCTCGATGAGAAAATCTATGTTCTGGGATCACCATCATCTTCATACAGCAGACGTGGTGATGATGTGGAGGAAGAGCCACAACTTTTTTGGGTTTTTGATCCTTTTCACGAATCCTGGAAGCCACTCCCTCATCCTCTCTTCTACAATCATGATACGTATTTTGTGTATTATGATGTTTCTTATGGTCACAAGCTTTTTATTCGTACATACGATCAAAGACACGTTTTTGACGCTCACCAAGAGAGATGGGGGGGTTCAGAAAACCACGGTTATGCTAAGCATTGCTTTGAATTTAATGCTATTGTAGAATTTGGTGAAGGCTTTTTAATTGCTGTGCCTAAGAGGACGAGCAATGAACAGAAGAGCCATGAGCTTGTTGCTTATAAGTTGGATGTTAACGGGATCCCTCAGCCACATCAGGTGCTACATGAGCTTACCGGGATGTTTTCATGGCATCCTTTGTTAAGTAACCCTCAAGTTTTTTTGGGTAAATGTGATGATAACCTTATGTGGTTGGTGTATTGTGGCAAGGATAATGTCCAGACATTTTCTTGTATAGGCGTCGCAGTGTTTCGAGTTTCTATGTCATATGACCATGCTGGCAATGTAGTGTTTTTGGTAGATATTGAGGCTGTGGATTTTATCGATTCAAATAGTTATGAGGTTCAAGGCGCCGAGGAGACCACTCTAGTTTACTCAGCTTCTGCCATGTGCCATGATAATTTGAAGACCAAGGATTGGTTTTTGTATTTGGATATGGGGGATCGACTATGCAGTATAAATATTAACAAATTCTGCAAAAAGAAGAGCTCTTTCATGTCTAAGTTCGGAGTTGTACATGATTTCTATCCAGAAGGTCGTCCTAGTACAATTCCCAGCAGAATAAAACATTTAACTGTGGGATCAAAAGTATATCTGGTTGGCGGTCAAAGACTCGATCGAAGAATCCATAGTGATGCACATGGGAGATGTTTTGCAATGCCCAACTTAGATATTTATGCATTTAATTTTAATCACAATTATGAAACAGAAGAGTGTCCTTCTATCACCCTCTGCCAATGTGAAGGTTCCATTCCCAGGTTGATTGATCCACGGACCAAAACCATTCCTATCACGATTGCTCTTGAGGATAAGATCTATGTTCTGGCAAAAAGACCATACTTGGGGGACGCAGAAGAACTTAATGATGATGATCGGCCACCACTTTTTAAGGTTTTTGATCCCCTCAAACAATCCTGGAAACACCTCCCTCATCCCCCCTGCTATAATATATCATCACGTGACACCGAGCCTTATGTGTGTAACTACTTCTCTTGGGGCCACAAGCTCATTATTCGCACCAAGGCAAAGAAAAAAAAGAAGAACCCCGGCACATACATTTTTGACACTCACCAAGAGAAATGGGAGGATGCCAAGAATATCAGTGCAATCCTTGATGAGGGTTTTAGGGTTGTGGCAGAATTCCAGGGATTTTTAATTGGCATGCCTTATAAGCGCCAAGAACTTGTTGCTTACCATTTGGATTCGAATGGGATTCCCAAACTCTCAAAGGTGCTACACGAGCTGCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTGGTAAATATGATGGTGACCGTATGTGGCTGGTGTATTCTGCGCAGGATAGTATGCAATTTTGGCATGCGCGGGTAGCGCTGTTTCGTGTTTTCATCTCTAATGACTATGATGGAAATCAAGTCCTCTGTGCAGATCTTGAGGCTGCACAATTTTTTAAGTTCGATAGATTTATTAGCTTGGCTTTCACTTATGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

725

Amino Acids

83.86

Weight (kDa)

6.15

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	97 - 209	2.6e-08	FKB95, Kelch-repeats domain
DUF1668	PF07893	479 - 593	3e-09	Protein of unknown function (DUF1668)
Kelch_FKB95	PF25210	490 - 688	8.7e-07	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	750, 1857
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	2019
AccB1I	GGYRCC	1 cut(s)	1037
AccB7I	CCANNNNNTGG	1 cut(s)	1104
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	2 cut(s)	234, 2047
AciI	CCGC	6 cut(s)	135, 232, 234, 276, 1290, 2047
AclWI	GGATC	9 cut(s)	266, 400, 458, 763, 776, 1137, 1276, 1448, 1580
AcoI	YGGCCR	2 cut(s)	136, 1562
AcsI	RAATTY	5 cut(s)	154, 656, 674, 1157, 1826
AcvI	CACGTG	1 cut(s)	1646
AcyI	GRCGYC	2 cut(s)	927, 1038
AfaI	GTAC	4 cut(s)	151, 571, 1203, 1234
AfeI	AGCGCT	1 cut(s)	2055
AfiI	CCNNNNNNNGG	5 cut(s)	52, 1104, 1443, 1529, 1804
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	7 cut(s)	34, 107, 124, 656, 1017, 1034, 1093
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	5 cut(s)	145, 479, 1442, 1601, 1830
AluBI	AGCT	9 cut(s)	559, 739, 799, 1067, 1176, 1693, 1930, 1947, 2154
AluI	AGCT	9 cut(s)	559, 739, 799, 1067, 1176, 1693, 1930, 1947, 2154
Alw21I	GWGCWC	1 cut(s)	1178
Alw26I	GTCTC	3 cut(s)	243, 1040, 1966
AlwI	GGATC	9 cut(s)	266, 400, 458, 763, 776, 1137, 1276, 1448, 1580
AlwNI	CAGNNNCTG	1 cut(s)	1070
Aor51HI	AGCGCT	1 cut(s)	2055
AoxI	GGCC	3 cut(s)	136, 1562, 1684
ApeKI	GCWGC	2 cut(s)	1930, 2120
ApoI	RAATTY	5 cut(s)	154, 656, 674, 1157, 1826
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	5 cut(s)	1040, 1863, 2020, 2047, 2056
AspS9I	GGNCC	2 cut(s)	1461, 1684
AsuC2I	CCSGG	2 cut(s)	805, 1734
AsuHPI	GGTGA	9 cut(s)	221, 355, 387, 434, 593, 692, 1405, 1748, 2003
AsuII	TTCGAA	1 cut(s)	1892
AvaII	GGWCC	1 cut(s)	1461
BamHI	GGATCC	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	1037
BanII	GRGCYC	1 cut(s)	1178
BauI	CACGAG	1 cut(s)	1925
BbrPI	CACGTG	1 cut(s)	1646
BbsI	GAAGAC	2 cut(s)	134, 1100
Bbv12I	GWGCWC	1 cut(s)	1178
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	2 cut(s)	1917, 2107
BccI	CCATC	5 cut(s)	308, 406, 606, 1982, 2081
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	5 cut(s)	147, 481, 1444, 1603, 1832
BcnI	CCSGG	2 cut(s)	805, 1734
BcoDI	GTCTC	3 cut(s)	243, 1040, 1966
BfaI	CTAG	3 cut(s)	330, 1055, 1230
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	3 cut(s)	1041, 1864, 2057
BglII	AGATCT	2 cut(s)	1500, 2110
BisI	GCNGC	3 cut(s)	136, 1931, 2121
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	3 cut(s)	137, 1932, 2122
Bme1390I	CCNGG	7 cut(s)	147, 481, 805, 1444, 1603, 1734, 1832
Bme18I	GGWCC	1 cut(s)	1461
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	1461, 1684
BmiI	GGNNCC	4 cut(s)	770, 1039, 1435, 1685
BmrFI	CCNGG	7 cut(s)	147, 481, 805, 1444, 1603, 1734, 1832
BmsI	GCATC	3 cut(s)	829, 1312, 1765
BpiI	GAAGAC	2 cut(s)	134, 1100
Bpu10I	CCTNAGC	1 cut(s)	774
Bpu1102I	GCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	1 cut(s)	1892
BpuEI	CTTGAG	3 cut(s)	825, 1511, 2135
BpuMI	CCSGG	2 cut(s)	805, 1734
Bsa29I	ATCGAT	1 cut(s)	1011
BsaAI	YACGTR	2 cut(s)	522, 1646
BsaBI	GATNNNNATC	4 cut(s)	397, 1212, 1557, 2091
BsaHI	GRCGYC	2 cut(s)	927, 1038
BsaI	GGTCTC	2 cut(s)	243, 1040
BsaJI	CCNNGG	9 cut(s)	232, 631, 1041, 1098, 1442, 1457, 1707, 1732, 1831
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 1104, 1443, 1529, 1804
Bse3DI	GCAATG	4 cut(s)	646, 724, 976, 1350
Bse8I	GATNNNNATC	4 cut(s)	397, 1212, 1557, 2091
BseBI	CCWGG	5 cut(s)	147, 481, 1444, 1603, 1832
BseCI	ATCGAT	1 cut(s)	1011
BseDI	CCNNGG	9 cut(s)	232, 631, 1041, 1098, 1442, 1457, 1707, 1732, 1831
BseGI	GGATG	8 cut(s)	262, 300, 496, 763, 813, 820, 1618, 1780
BseJI	GATNNNNATC	4 cut(s)	397, 1212, 1557, 2091
BseLI	CCNNNNNNNGG	5 cut(s)	52, 1104, 1443, 1529, 1804
BseMI	GCAATG	4 cut(s)	646, 724, 976, 1350
BseMII	CTCAG	3 cut(s)	90, 788, 1077
BseRI	GAGGAG	1 cut(s)	1058
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	1917, 2107
BseYI	CCCAGC	2 cut(s)	278, 1241
BsgI	GTGCAG	2 cut(s)	2106, 2127
Bsh1236I	CGCG	2 cut(s)	234, 2047
Bsh1285I	CGRYCG	3 cut(s)	46, 139, 1306
BshFI	GGCC	3 cut(s)	138, 1564, 1686
BshNI	GGYRCC	1 cut(s)	1037
BshVI	ATCGAT	1 cut(s)	1011
BsiEI	CGRYCG	3 cut(s)	46, 139, 1306
BsiHKAI	GWGCWC	1 cut(s)	1178
BsiSI	CCGG	2 cut(s)	804, 1734
BslFI	GGGAC	1 cut(s)	1547
BslI	CCNNNNNNNGG	5 cut(s)	52, 1104, 1443, 1529, 1804
BsmAI	GTCTC	3 cut(s)	243, 1040, 1966
BsmFI	GGGAC	1 cut(s)	1547
BsnI	GGCC	3 cut(s)	138, 1564, 1686
Bso31I	GGTCTC	2 cut(s)	243, 1040
Bsp119I	TTCGAA	1 cut(s)	1892
Bsp1286I	GDGCHC	1 cut(s)	1178
Bsp1407I	TGTACA	1 cut(s)	1201
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	6 cut(s)	135, 232, 234, 276, 1290, 2047
BspANI	GGCC	3 cut(s)	138, 1564, 1686
BspCNI	CTCAG	3 cut(s)	91, 787, 1076
BspDI	ATCGAT	1 cut(s)	1011
BspFNI	CGCG	2 cut(s)	234, 2047
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	4 cut(s)	770, 1039, 1435, 1685
BspPI	GGATC	9 cut(s)	266, 400, 458, 763, 776, 1137, 1276, 1448, 1580
BspQI	GCTCTTC	3 cut(s)	432, 722, 1166
BspT104I	TTCGAA	1 cut(s)	1892
BspT107I	GGYRCC	1 cut(s)	1037
BspTNI	GGTCTC	2 cut(s)	243, 1040
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	4 cut(s)	646, 724, 976, 1350
BsrGI	TGTACA	1 cut(s)	1201
BssECI	CCNNGG	9 cut(s)	232, 631, 1041, 1098, 1442, 1457, 1707, 1732, 1831
BssNI	GRCGYC	2 cut(s)	927, 1038
BssSI	CACGAG	1 cut(s)	1925
BssT1I	CCWWGG	2 cut(s)	1098, 1707
Bst2BI	CACGAG	1 cut(s)	1925
Bst2UI	CCWGG	5 cut(s)	147, 481, 1444, 1603, 1832
Bst4CI	ACNGT	6 cut(s)	187, 293, 635, 1264, 1970, 1997
Bst6I	CTCTTC	6 cut(s)	94, 432, 509, 722, 1166, 1392
BstACI	GRCGYC	2 cut(s)	927, 1038
BstAUI	TGTACA	1 cut(s)	1201
BstBAI	YACGTR	2 cut(s)	522, 1646
BstBI	TTCGAA	1 cut(s)	1892
BstC8I	GCNNGC	3 cut(s)	967, 1850, 2043
BstDEI	CTNAG	8 cut(s)	65, 99, 642, 705, 774, 1063, 1188, 1354
BstDSI	CCRYGG	3 cut(s)	232, 631, 1457
BstEII	GGTNACC	1 cut(s)	1991
BstENI	CCTNNNNNAGG	1 cut(s)	1802
BstF5I	GGATG	8 cut(s)	262, 300, 496, 763, 813, 820, 1618, 1780
BstFNI	CGCG	2 cut(s)	234, 2047
BstH2I	RGCGCY	3 cut(s)	1041, 1864, 2057
BstHHI	GCGC	5 cut(s)	1040, 1863, 2020, 2047, 2056
BstMAI	GTCTC	3 cut(s)	243, 1040, 1966
BstMCI	CGRYCG	3 cut(s)	46, 139, 1306
BstMWI	GCNNNNNNNGC	6 cut(s)	796, 1858, 1927, 2038, 2051, 2053
BstNI	CCWGG	5 cut(s)	147, 481, 1444, 1603, 1832
BstNSI	RCATGY	2 cut(s)	1852, 2045
BstPI	GGTNACC	1 cut(s)	1991
BstSCI	CCNGG	7 cut(s)	145, 479, 803, 1442, 1601, 1732, 1830
BstSFI	CTRYAG	1 cut(s)	354
BstSNI	TACGTA	1 cut(s)	522
BstUI	CGCG	2 cut(s)	234, 2047
BstV1I	GCAGC	2 cut(s)	1917, 2107
BstV2I	GAAGAC	2 cut(s)	134, 1100
BstX2I	RGATCY	3 cut(s)	768, 1500, 2110
BstYI	RGATCY	3 cut(s)	768, 1500, 2110
BstZI	CGGCCG	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	1011
BsuRI	GGCC	3 cut(s)	138, 1564, 1686
BsuTUI	ATCGAT	1 cut(s)	1011
BtgI	CCRYGG	3 cut(s)	232, 631, 1457
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	8 cut(s)	262, 300, 496, 763, 813, 820, 1618, 1780
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	939, 1795
Cac8I	GCNNGC	3 cut(s)	967, 1850, 2043
CaiI	CAGNNNCTG	1 cut(s)	1070
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	5 cut(s)	1040, 1863, 2020, 2047, 2056
Cfr13I	GGNCC	2 cut(s)	1461, 1684
Cfr42I	CCGCGG	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	1011
CseI	GACGC	3 cut(s)	605, 916, 1544
Csp6I	GTAC	4 cut(s)	150, 570, 1202, 1233
CviQI	GTAC	4 cut(s)	150, 570, 1202, 1233
DdeI	CTNAG	8 cut(s)	65, 99, 642, 705, 774, 1063, 1188, 1354
DinI	GGCGCC	1 cut(s)	1039
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	2 cut(s)	136, 1562
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	6 cut(s)	94, 432, 509, 722, 1166, 1392
EarI	CTCTTC	6 cut(s)	94, 432, 509, 722, 1166, 1392
Ecl136II	GAGCTC	1 cut(s)	1176
EclXI	CGGCCG	1 cut(s)	136
Eco105I	TACGTA	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	1098, 1707
Eco24I	GRGCYC	1 cut(s)	1178
Eco31I	GGTCTC	2 cut(s)	243, 1040
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	1461
Eco47III	AGCGCT	1 cut(s)	2055
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	1176
Eco72I	CACGTG	1 cut(s)	1646
Eco91I	GGTNACC	1 cut(s)	1991
EcoICRI	GAGCTC	1 cut(s)	1176
EcoNI	CCTNNNNNAGG	1 cut(s)	1802
EcoO65I	GGTNACC	1 cut(s)	1991
EcoRI	GAATTC	1 cut(s)	1826
EcoRII	CCWGG	5 cut(s)	145, 479, 1442, 1601, 1830
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	1098, 1707
EcoT22I	ATGCAT	1 cut(s)	1369
EcoT38I	GRGCYC	1 cut(s)	1178
EgeI	GGCGCC	1 cut(s)	1039
EheI	GGCGCC	1 cut(s)	1039
ErhI	CCWWGG	2 cut(s)	1098, 1707
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 635, 667
FaqI	GGGAC	1 cut(s)	1547
FauI	CCCGC	3 cut(s)	227, 283, 2040
FauNDI	CATATG	1 cut(s)	955
Fnu4HI	GCNGC	3 cut(s)	136, 1931, 2121
FokI	GGATG	8 cut(s)	269, 287, 483, 770, 807, 820, 1605, 1787
FriOI	GRGCYC	1 cut(s)	1178
Fsp4HI	GCNGC	3 cut(s)	136, 1931, 2121
FspBI	CTAG	3 cut(s)	330, 1055, 1230
FspI	TGCGCA	1 cut(s)	2019
GlaI	GCGC	5 cut(s)	1039, 1862, 2019, 2046, 2055
GluI	GCNGC	3 cut(s)	136, 1931, 2121
GsaI	CCCAGC	2 cut(s)	282, 1245
HaeII	RGCGCY	3 cut(s)	1041, 1864, 2057
HaeIII	GGCC	3 cut(s)	138, 1564, 1686
HapII	CCGG	2 cut(s)	804, 1734
HgaI	GACGC	3 cut(s)	605, 916, 1544
HhaI	GCGC	5 cut(s)	1040, 1863, 2020, 2047, 2056
Hin1I	GRCGYC	2 cut(s)	927, 1038
Hin6I	GCGC	5 cut(s)	1038, 1861, 2018, 2045, 2054
HinP1I	GCGC	5 cut(s)	1038, 1861, 2018, 2045, 2054
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	6 cut(s)	476, 1013, 1299, 1311, 1889, 1900
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	2 cut(s)	804, 1734
HphI	GGTGA	9 cut(s)	221, 355, 387, 434, 593, 692, 1405, 1748, 2003
Hpy166II	GTNNAC	4 cut(s)	363, 763, 1060, 1955
Hpy188I	TCNGA	6 cut(s)	77, 132, 160, 625, 1196, 1966
Hpy188III	TCNNGA	7 cut(s)	473, 515, 907, 1217, 1480, 1490, 2114
Hpy8I	GTNNAC	4 cut(s)	363, 763, 1060, 1955
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	5 cut(s)	7, 677, 1214, 1416, 1424
HpyCH4III	ACNGT	6 cut(s)	187, 293, 635, 1264, 1970, 1997
HpyCH4IV	ACGT	4 cut(s)	418, 521, 588, 1645
HpyF10VI	GCNNNNNNNGC	6 cut(s)	796, 1858, 1927, 2038, 2051, 2053
HpyF3I	CTNAG	8 cut(s)	65, 99, 642, 705, 774, 1063, 1188, 1354
HpySE526I	ACGT	4 cut(s)	418, 521, 588, 1645
Hsp92I	GRCGYC	2 cut(s)	927, 1038
HspAI	GCGC	5 cut(s)	1038, 1861, 2018, 2045, 2054
KasI	GGCGCC	1 cut(s)	1037
KspAI	GTTAAC	1 cut(s)	763
KspI	CCGCGG	1 cut(s)	235
LguI	GCTCTTC	3 cut(s)	432, 722, 1166
Lsp1109I	GCAGC	2 cut(s)	1917, 2107
LweI	GCATC	3 cut(s)	829, 1312, 1765
MaeI	CTAG	3 cut(s)	330, 1055, 1230
MaeII	ACGT	4 cut(s)	418, 521, 588, 1645
MaeIII	GTNAC	7 cut(s)	217, 311, 551, 833, 1646, 1667, 1991
MbiI	CCGCTC	1 cut(s)	135
MflI	RGATCY	3 cut(s)	768, 1500, 2110
MhlI	GDGCHC	1 cut(s)	1178
Mly113I	GGCGCC	1 cut(s)	1038
MlyI	GAGTC	1 cut(s)	1293
MmeI	TCCRAC	4 cut(s)	222, 234, 735, 1989
Mph1103I	ATGCAT	1 cut(s)	1369
MroXI	GAANNNNTTC	1 cut(s)	111
MslI	CAYNNNNRTG	3 cut(s)	636, 1320, 1386
MspA1I	CMGCKG	2 cut(s)	234, 278
MspI	CCGG	2 cut(s)	804, 1734
MspR9I	CCNGG	7 cut(s)	147, 481, 805, 1444, 1603, 1734, 1832
MvaI	CCWGG	5 cut(s)	147, 481, 1444, 1603, 1832
MvnI	CGCG	2 cut(s)	234, 2047
MwoI	GCNNNNNNNGC	6 cut(s)	796, 1858, 1927, 2038, 2051, 2053
NarI	GGCGCC	1 cut(s)	1038
NciI	CCSGG	2 cut(s)	805, 1734
NdeI	CATATG	1 cut(s)	955
NlaIV	GGNNCC	4 cut(s)	770, 1039, 1435, 1685
NmeAIII	GCCGAG	1 cut(s)	1066
NmuCI	GTSAC	4 cut(s)	311, 551, 1646, 1991
NsbI	TGCGCA	1 cut(s)	2019
NsiI	ATGCAT	1 cut(s)	1369
NspI	RCATGY	2 cut(s)	1852, 2045
NspV	TTCGAA	1 cut(s)	1892
PaeI	GCATGC	2 cut(s)	1852, 2045
PagI	TCATGA	1 cut(s)	514
PciSI	GCTCTTC	3 cut(s)	432, 722, 1166
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	5 cut(s)	476, 1013, 1311, 1889, 1900
PflMI	CCANNNNNTGG	1 cut(s)	1104
PfoI	TCCNGGA	2 cut(s)	479, 1601
PkrI	GCNGC	3 cut(s)	137, 1932, 2122
Ple19I	CGATCG	1 cut(s)	1306
PleI	GAGTC	1 cut(s)	1293
PluTI	GGCGCC	1 cut(s)	1041
PmaCI	CACGTG	1 cut(s)	1646
PmlI	CACGTG	1 cut(s)	1646
PpsI	GAGTC	1 cut(s)	1293
Ppu21I	YACGTR	2 cut(s)	522, 1646
PsiI	TTATAA	2 cut(s)	750, 1857
Psp124BI	GAGCTC	1 cut(s)	1178
Psp6I	CCWGG	5 cut(s)	145, 479, 1442, 1601, 1830
PspCI	CACGTG	1 cut(s)	1646
PspEI	GGTNACC	1 cut(s)	1991
PspFI	CCCAGC	2 cut(s)	278, 1241
PspGI	CCWGG	5 cut(s)	145, 479, 1442, 1601, 1830
PspN4I	GGNNCC	4 cut(s)	770, 1039, 1435, 1685
PspPI	GGNCC	2 cut(s)	1461, 1684
PstNI	CAGNNNCTG	1 cut(s)	1070
PsuI	RGATCY	3 cut(s)	768, 1500, 2110
PvuI	CGATCG	1 cut(s)	1306
RsaI	GTAC	4 cut(s)	151, 571, 1203, 1234
RsaNI	GTAC	4 cut(s)	150, 570, 1202, 1233
RseI	CAYNNNNRTG	3 cut(s)	636, 1320, 1386
SacI	GAGCTC	1 cut(s)	1178
SacII	CCGCGG	1 cut(s)	235
SapI	GCTCTTC	3 cut(s)	432, 722, 1166
SatI	GCNGC	3 cut(s)	136, 1931, 2121
Sau96I	GGNCC	2 cut(s)	1461, 1684
SchI	GAGTC	1 cut(s)	1293
ScrFI	CCNGG	7 cut(s)	147, 481, 805, 1444, 1603, 1734, 1832
SduI	GDGCHC	1 cut(s)	1178
SfaNI	GCATC	3 cut(s)	829, 1312, 1765
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	1039
Sfr303I	CCGCGG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	1892
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	1461
SmiMI	CAYNNNNRTG	3 cut(s)	636, 1320, 1386
SmlI	CTYRAG	3 cut(s)	840, 1490, 2114
SmoI	CTYRAG	3 cut(s)	840, 1490, 2114
SnaBI	TACGTA	1 cut(s)	522
SphI	GCATGC	2 cut(s)	1852, 2045
SsiI	CCGC	6 cut(s)	135, 232, 234, 276, 1290, 2047
SspDI	GGCGCC	1 cut(s)	1037
SspI	AATATT	1 cut(s)	1150
SspMI	CTAG	3 cut(s)	330, 1055, 1230
SstI	GAGCTC	1 cut(s)	1178
StyD4I	CCNGG	7 cut(s)	145, 479, 803, 1442, 1601, 1732, 1830
StyI	CCWWGG	2 cut(s)	1098, 1707
TaaI	ACNGT	6 cut(s)	187, 293, 635, 1264, 1970, 1997
TaiI	ACGT	4 cut(s)	421, 524, 591, 1648
TaqI	TCGA	9 cut(s)	5, 369, 940, 1011, 1132, 1302, 1306, 1892, 2139
TaqII	GACCGA	1 cut(s)	60
TatI	WGTACW	2 cut(s)	1201, 1232
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	5 cut(s)	476, 1013, 1311, 1889, 1900
TscAI	CASTG	2 cut(s)	939, 1795
TseFI	GTSAC	4 cut(s)	311, 551, 1646, 1991
TseI	GCWGC	2 cut(s)	1930, 2120
Tsp45I	GTSAC	4 cut(s)	311, 551, 1646, 1991
TspDTI	ATGAA	8 cut(s)	23, 53, 396, 735, 804, 1171, 1404, 2059
TspGWI	ACGGA	2 cut(s)	293, 1474
TspRI	CASTG	2 cut(s)	939, 1795
Van91I	CCANNNNNTGG	1 cut(s)	1104
VpaK11BI	GGWCC	1 cut(s)	1461
XagI	CCTNNNNNAGG	1 cut(s)	1802
XapI	RAATTY	5 cut(s)	154, 656, 674, 1157, 1826
XceI	RCATGY	2 cut(s)	1852, 2045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	3 cut(s)	330, 1055, 1230
Zsp2I	ATGCAT	1 cut(s)	1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.