pycom13g13630

protein DEHYDRATION-INDUCED 19 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008255
Physical Location & Seq
Forward (+)
9684680 .. 9685024
345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGTGCTCCTTGACTATACATTACGTTCAGCGCAAGAGGAAATTTCGCAGAGGATCTAGTTCAACATTTTCTATATTGAGGAAAGAGCTGCGAGAAGGAAGTTTACAATCCCTTCTAGGAGGGTCTTCATTCCTTCCGTCAAACACTGAAGCTGATCCTTTGTTGTCTTCTTTTATATTTAACCCTCCCACAGTTGATGAGGATGTGAGTACAAAGCAGCATCCTTTAGTTGAACCATCTTTTGTAAAGGAGAGCACAAAGGAAGTGGTCTCAGAAAGGTATGAGCATCATTGCCACTTTACAACTTTTAGCTTTTTCTTTCCTTTTTATGTTTTTGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

7.85

Isoelectric Point (pI)

64.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Di19_C PF14571 23 - 97 7.5e-20 Stress-induced protein Di19, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 61, 149
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 2 cut(s) 63, 233
AluBI AGCT 3 cut(s) 88, 152, 312
AluI AGCT 3 cut(s) 88, 152, 312
Alw21I GWGCWC 2 cut(s) 8, 257
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 61, 149
ApeKI GCWGC 2 cut(s) 88, 217
ApoI RAATTY 1 cut(s) 41
AspLEI GCGC 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BbsI GAAGAC 2 cut(s) 117, 159
Bbv12I GWGCWC 2 cut(s) 8, 257
BbvI GCAGC 2 cut(s) 75, 229
BccI CCATC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 57, 116
BisI GCNGC 2 cut(s) 89, 218
BlsI GCNGC 2 cut(s) 90, 219
BmsI GCATC 2 cut(s) 229, 295
BpiI GAAGAC 2 cut(s) 117, 159
BsaI GGTCTC 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 289
BseGI GGATG 2 cut(s) 208, 220
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 285
BseXI GCAGC 2 cut(s) 75, 229
BsiHKAI GWGCWC 2 cut(s) 8, 257
BsmAI GTCTC 1 cut(s) 274
Bso31I GGTCTC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 8, 257
Bsp143I GATC 2 cut(s) 53, 154
BspCNI CTCAG 1 cut(s) 284
BspPI GGATC 2 cut(s) 61, 149
BspTNI GGTCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 289
BssMI GATC 2 cut(s) 53, 154
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 271
BstF5I GGATG 2 cut(s) 208, 220
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 56, 157
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 53, 154
BstV1I GCAGC 2 cut(s) 75, 229
BstV2I GAAGAC 2 cut(s) 117, 159
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 2 cut(s) 208, 220
BtsIMutI CAGTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 246, 281
CviJI RGCY 4 cut(s) 88, 152, 312, 342
CviKI_1 RGCY 4 cut(s) 88, 152, 312, 342
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 271
DpnI GATC 2 cut(s) 55, 156
DpnII GATC 2 cut(s) 53, 154
Eco31I GGTCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 168
FaiI YATR 5 cut(s) 17, 74, 176, 282, 330
Fnu4HI GCNGC 2 cut(s) 89, 218
FokI GGATG 2 cut(s) 207, 215
Fsp4HI GCNGC 2 cut(s) 89, 218
FspBI CTAG 2 cut(s) 57, 116
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 89, 218
HhaI GCGC 1 cut(s) 33
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 89, 122, 143
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 24
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 53, 154
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 2 cut(s) 75, 229
LweI GCATC 2 cut(s) 229, 295
MaeI CTAG 2 cut(s) 57, 116
MaeII ACGT 1 cut(s) 24
MalI GATC 2 cut(s) 55, 156
MboI GATC 2 cut(s) 53, 154
MboII GAAGA 2 cut(s) 117, 159
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 2 cut(s) 8, 257
MluCI AATT 1 cut(s) 41
MnlI CCTC 6 cut(s) 30, 44, 72, 113, 193, 195
MseI TTAA 1 cut(s) 180
NdeII GATC 2 cut(s) 53, 154
PkrI GCNGC 2 cut(s) 90, 219
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 89, 218
Sau3AI GATC 2 cut(s) 53, 154
SduI GDGCHC 2 cut(s) 8, 257
SetI ASST 5 cut(s) 27, 90, 154, 281, 314
SfaNI GCATC 2 cut(s) 229, 295
SgeI CNNG 5 cut(s) 22, 46, 69, 104, 128
Sse9I AATT 1 cut(s) 41
SspMI CTAG 2 cut(s) 57, 116
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 27
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 209
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 151
TseI GCWGC 2 cut(s) 88, 217
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 151
XapI RAATTY 1 cut(s) 41
XspI CTAG 2 cut(s) 57, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.