Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Forward (+)

20451612 .. 20453119

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCGCACTCCGAACGCGACACCGTCCCCCTCCACCCCTCCTCCCAATCCGACATCGACGAGATCGAAAACCTAATCAACGCAAGCGTCCAATCGGGCCCCACCACCGTCCTCCCCGCCAAACCCCCCAGTCCTCCCCGCGCCTCCATTCCCGTTTCATCATCCCCTTTCATCCCATCAAACCTCCCGCCCCCAGCCCCCTCCTCCGCCACGAAGCAGAAGCCTTCCTCTGTCCCCGCCCCACCTCCCATTCCCTCCGCAACCAACGGCCCCAGTATCTCCCCCCCCGGGTTCGGCCCCCCGCCCAACACCCTAACCGAGCCCGTTTGGGACACCGTGAAGCGCGACTTGTCGAGAATCGTGAGCAATTTGAAGCTTGTGGTGTTCCCCAACCCGTATCGTGAGGACCCGGGAAAGGCCTTGAGGGATTGGGATCTCTGGGGACCTTTCTTCTTCATTGTGTTCTTGGGTCTCACTCTTTCCTGGTCTGCATCTGTTAAAAAGTCTGAGGTTTTTGCTGTTGCTTTTGCTGTGCTTGCTGCTGGTGCTGTGATTCTGACGCTGAATGTACTCCTACTGGGTGGACACATAATATTCTTCCAGAGCCTTAGTCTCCTCGGTTATTGCCTATTTCCTCTGGACGTTGGAGCTCTGATATGTATGGTGAAGGACAATGTGATATTGAAGGTGGTTGTGGTAAGCGTAACACTGGCTTGGAGTTCGTGGGCTGCATATCCTTTCATGAGTTCAGCAGTCAACCCCAGGAGAAAAGCCCTTGCACTTTACCCTGTTTTCCTATTGTACGTATCTGTCGGTTTCCTCATTATCGCCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

280

Amino Acids

29.89

Weight (kDa)

8.53

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	141 - 273	3.4e-15	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	18, 141, 345
AciI	CCGC	7 cut(s)	117, 139, 188, 207, 237, 258, 302
AclWI	GGATC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	570, 803
AfiI	CCNNNNNNNGG	3 cut(s)	288, 293, 415
AgsI	TTSAA	2 cut(s)	373, 685
AjnI	CCWGG	2 cut(s)	482, 761
AluBI	AGCT	2 cut(s)	376, 650
AluI	AGCT	2 cut(s)	376, 650
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	476, 617
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	2 cut(s)	287, 409
AoxI	GGCC	4 cut(s)	97, 268, 295, 417
ApaI	GGGCCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	539, 728
AspLEI	GCGC	2 cut(s)	143, 345
AspS9I	GGNCC	6 cut(s)	97, 98, 269, 296, 406, 443
AsuC2I	CCSGG	4 cut(s)	288, 289, 410, 411
AsuHPI	GGTGA	1 cut(s)	676
AvaI	CYCGRG	2 cut(s)	287, 409
AvaII	GGWCC	2 cut(s)	406, 443
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	3 cut(s)	101, 324, 652
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	2 cut(s)	526, 715
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	484, 763
BcnI	CCSGG	4 cut(s)	288, 289, 410, 411
BcoDI	GTCTC	2 cut(s)	476, 617
BisI	GCNGC	2 cut(s)	540, 729
BlsI	GCNGC	2 cut(s)	541, 730
Bme1390I	CCNGG	6 cut(s)	288, 289, 410, 411, 484, 763
Bme18I	GGWCC	2 cut(s)	406, 443
BmeT110I	CYCGRG	2 cut(s)	287, 409
BmgT120I	GGNCC	6 cut(s)	97, 98, 269, 296, 406, 443
BmiI	GGNNCC	6 cut(s)	99, 100, 271, 298, 408, 444
BmrFI	CCNGG	6 cut(s)	288, 289, 410, 411, 484, 763
BmrI	ACTGGG	3 cut(s)	123, 267, 587
BmsI	GCATC	1 cut(s)	500
BmuI	ACTGGG	3 cut(s)	123, 267, 587
BpuEI	CTTGAG	1 cut(s)	442
BpuMI	CCSGG	4 cut(s)	288, 289, 410, 411
BsaAI	YACGTR	1 cut(s)	805
BsaBI	GATNNNNATC	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	286, 287, 409, 616, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 293, 415
Bse1I	ACTGG	4 cut(s)	129, 273, 582, 714
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	484, 763
BseDI	CCNNGG	5 cut(s)	286, 287, 409, 616, 761
BseGI	GGATG	2 cut(s)	161, 171
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	3 cut(s)	288, 293, 415
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	4 cut(s)	129, 273, 582, 714
BseRI	GAGGAG	3 cut(s)	31, 193, 605
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	526, 715
BseYI	CCCAGC	1 cut(s)	193
Bsh1236I	CGCG	3 cut(s)	18, 141, 345
BshFI	GGCC	4 cut(s)	99, 270, 297, 419
BsiHKAI	GWGCWC	1 cut(s)	652
BsiHKCI	CYCGRG	2 cut(s)	287, 409
BsiSI	CCGG	2 cut(s)	288, 410
BslFI	GGGAC	4 cut(s)	11, 218, 344, 456
BslI	CCNNNNNNNGG	3 cut(s)	288, 293, 415
BsmAI	GTCTC	2 cut(s)	476, 617
BsmFI	GGGAC	4 cut(s)	11, 218, 344, 456
BsnI	GGCC	4 cut(s)	99, 270, 297, 419
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	2 cut(s)	287, 409
Bsp120I	GGGCCC	1 cut(s)	97
Bsp1286I	GDGCHC	3 cut(s)	101, 324, 652
Bsp143I	GATC	2 cut(s)	63, 433
BspACI	CCGC	7 cut(s)	117, 139, 188, 207, 237, 258, 302
BspANI	GGCC	4 cut(s)	99, 270, 297, 419
BspCNI	CTCAG	1 cut(s)	499
BspFNI	CGCG	3 cut(s)	18, 141, 345
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	6 cut(s)	99, 100, 271, 298, 408, 444
BspPI	GGATC	1 cut(s)	441
BspTNI	GGTCTC	1 cut(s)	476
BsrI	ACTGG	4 cut(s)	129, 273, 582, 714
BssECI	CCNNGG	5 cut(s)	286, 287, 409, 616, 761
BssMI	GATC	2 cut(s)	63, 433
Bst2UI	CCWGG	2 cut(s)	484, 763
Bst4CI	ACNGT	3 cut(s)	25, 109, 337
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	85, 537
BstDEI	CTNAG	2 cut(s)	507, 608
BstF5I	GGATG	2 cut(s)	161, 171
BstFNI	CGCG	3 cut(s)	18, 141, 345
BstHHI	GCGC	2 cut(s)	143, 345
BstKTI	GATC	2 cut(s)	66, 436
BstMAI	GTCTC	2 cut(s)	476, 617
BstMBI	GATC	2 cut(s)	63, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 545
BstNI	CCWGG	2 cut(s)	484, 763
BstSCI	CCNGG	6 cut(s)	286, 287, 408, 409, 482, 761
BstSLI	GKGCMC	1 cut(s)	101
BstSNI	TACGTA	1 cut(s)	805
BstUI	CGCG	3 cut(s)	18, 141, 345
BstV1I	GCAGC	2 cut(s)	526, 715
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	4 cut(s)	99, 270, 297, 419
BtsCI	GGATG	2 cut(s)	161, 171
BtsIMutI	CAGTG	1 cut(s)	707
Cac8I	GCNNGC	2 cut(s)	85, 537
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	2 cut(s)	143, 345
Cfr13I	GGNCC	6 cut(s)	97, 98, 269, 296, 406, 443
Cfr9I	CCCGGG	2 cut(s)	287, 409
CseI	GACGC	2 cut(s)	76, 568
Csp6I	GTAC	2 cut(s)	569, 802
CviAII	CATG	1 cut(s)	742
CviQI	GTAC	2 cut(s)	569, 802
DdeI	CTNAG	2 cut(s)	507, 608
DpnI	GATC	2 cut(s)	65, 435
DpnII	GATC	2 cut(s)	63, 433
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	650
Eco105I	TACGTA	1 cut(s)	805
Eco147I	AGGCCT	1 cut(s)	419
Eco24I	GRGCYC	3 cut(s)	101, 324, 652
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	406, 443
Eco53kI	GAGCTC	1 cut(s)	650
Eco88I	CYCGRG	2 cut(s)	287, 409
EcoICRI	GAGCTC	1 cut(s)	650
EcoO109I	RGGNCCY	3 cut(s)	98, 406, 443
EcoRII	CCWGG	2 cut(s)	482, 761
EcoT38I	GRGCYC	3 cut(s)	101, 324, 652
FaeI	CATG	1 cut(s)	745
FaiI	YATR	5 cut(s)	590, 658, 662, 733, 743
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	4 cut(s)	11, 218, 344, 456
FatI	CATG	1 cut(s)	741
FauI	CCCGC	5 cut(s)	124, 146, 195, 244, 309
Fnu4HI	GCNGC	2 cut(s)	540, 729
FokI	GGATG	2 cut(s)	148, 158
FriOI	GRGCYC	3 cut(s)	101, 324, 652
Fsp4HI	GCNGC	2 cut(s)	540, 729
GlaI	GCGC	2 cut(s)	142, 344
GluI	GCNGC	2 cut(s)	540, 729
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	4 cut(s)	99, 270, 297, 419
HapII	CCGG	2 cut(s)	288, 410
HgaI	GACGC	2 cut(s)	76, 568
HhaI	GCGC	2 cut(s)	143, 345
Hin1II	CATG	1 cut(s)	745
Hin6I	GCGC	2 cut(s)	141, 343
HinP1I	GCGC	2 cut(s)	141, 343
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	357, 553
HpaII	CCGG	2 cut(s)	288, 410
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	2 cut(s)	584, 757
Hpy188I	TCNGA	5 cut(s)	13, 52, 508, 558, 654
Hpy188III	TCNNGA	6 cut(s)	354, 361, 401, 601, 638, 742
Hpy8I	GTNNAC	2 cut(s)	584, 757
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	234, 661, 679
HpyCH4III	ACNGT	3 cut(s)	25, 109, 337
HpyCH4IV	ACGT	2 cut(s)	642, 804
HpyCH4V	TGCA	3 cut(s)	491, 731, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 545
HpyF3I	CTNAG	2 cut(s)	507, 608
HpySE526I	ACGT	2 cut(s)	642, 804
Hsp92II	CATG	1 cut(s)	745
HspAI	GCGC	2 cut(s)	141, 343
Kzo9I	GATC	2 cut(s)	63, 433
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	2 cut(s)	526, 715
LweI	GCATC	1 cut(s)	500
MaeII	ACGT	2 cut(s)	642, 804
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	2 cut(s)	65, 435
MboI	GATC	2 cut(s)	63, 433
MboII	GAAGA	3 cut(s)	442, 445, 589
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	3 cut(s)	101, 324, 652
MluCI	AATT	1 cut(s)	367
MmeI	TCCRAC	2 cut(s)	75, 625
MseI	TTAA	1 cut(s)	498
MspI	CCGG	2 cut(s)	288, 410
MspR9I	CCNGG	6 cut(s)	288, 289, 410, 411, 484, 763
MvaI	CCWGG	2 cut(s)	484, 763
MvnI	CGCG	3 cut(s)	18, 141, 345
MwoI	GCNNNNNNNGC	2 cut(s)	536, 545
NciI	CCSGG	4 cut(s)	288, 289, 410, 411
NdeII	GATC	2 cut(s)	63, 433
NlaIII	CATG	1 cut(s)	745
NlaIV	GGNNCC	6 cut(s)	99, 100, 271, 298, 408, 444
PagI	TCATGA	1 cut(s)	741
PceI	AGGCCT	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	357, 553
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	541, 730
Ppu21I	YACGTR	1 cut(s)	805
PpuMI	RGGWCCY	2 cut(s)	406, 443
Psp124BI	GAGCTC	1 cut(s)	652
Psp5II	RGGWCCY	2 cut(s)	406, 443
Psp6I	CCWGG	2 cut(s)	482, 761
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	2 cut(s)	482, 761
PspN4I	GGNNCC	6 cut(s)	99, 100, 271, 298, 408, 444
PspOMI	GGGCCC	1 cut(s)	97
PspPI	GGNCC	6 cut(s)	97, 98, 269, 296, 406, 443
PspPPI	RGGWCCY	2 cut(s)	406, 443
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	570, 803
RsaNI	GTAC	2 cut(s)	569, 802
SacI	GAGCTC	1 cut(s)	652
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	540, 729
Sau3AI	GATC	2 cut(s)	63, 433
Sau96I	GGNCC	6 cut(s)	97, 98, 269, 296, 406, 443
ScrFI	CCNGG	6 cut(s)	288, 289, 410, 411, 484, 763
SduI	GDGCHC	3 cut(s)	101, 324, 652
SfaNI	GCATC	1 cut(s)	500
SinI	GGWCC	2 cut(s)	406, 443
SmaI	CCCGGG	2 cut(s)	289, 411
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
SnaBI	TACGTA	1 cut(s)	805
Sse9I	AATT	1 cut(s)	367
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	7 cut(s)	117, 139, 188, 207, 237, 258, 302
SspI	AATATT	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	652
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	6 cut(s)	286, 287, 408, 409, 482, 761
TaaI	ACNGT	3 cut(s)	25, 109, 337
TaiI	ACGT	2 cut(s)	645, 807
TaqI	TCGA	3 cut(s)	57, 66, 353
TasI	AATT	1 cut(s)	367
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	2 cut(s)	357, 553
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	714
TseI	GCWGC	2 cut(s)	539, 728
TspDTI	ATGAA	4 cut(s)	147, 160, 445, 730
TspMI	CCCGGG	2 cut(s)	287, 409
TspRI	CASTG	1 cut(s)	714
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	406, 443
XmaI	CCCGGG	2 cut(s)	287, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.