pycom13g29460

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002114
Physical Location & Seq
Reverse (-)
26343199 .. 26345772
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1311 bp
ATGGGTTGGAACACATTTTATCAATATATCAAATTATGCTGTTATAAATTTATCCAAAGGATTCCGTACATCATTTTAACACGAGTTTCAGTAGTTAGTTCCATCTCTCTGAATCTCTCTCCTCTTACTGCAGGCGGGAAACTGATAGTTGGGAGCAAAACCCTCCCTCCCAAAAACCGCCGAGACACCTGTCAGATCCCTCTCTCTTCTTTCCTAAAATCCCCAACCCTAATCCTCCCAAACCCACAAACCCCCCAGAGAGATTTAGAGAGAGAGCAAAAGCGAGAAAGCCCCCCTCTTTGCTCTCTCTCCATGGCAGTTCCCCTCAAGCACCAAAACGACGACGCCTCAACCGACATCCACGCCTCCACGCCCCTCCGCTACCTATCTCTGAACCACGTCTATTCCGCCACCTCTCCTTGCGTCAGCGCCAGCGGGTCCTCCAACGTCATGTCCAAGAAGGTCAAAGCTCGCAAGCTCGACGACTTCGACGATGGCGATGCCGGCGATCAGAATCTTCAGAAGCCCTCTCCCAAACCCTCATTTGTCAATGTCTACTCCCGCCGGGCCAAGCGGCCTCGCCATTGCTCCTCCTTCTTCGATGCTTTGCTTGCCCGGAATGAGCCGCCGGCGGTGAAGATTGAGGCGGTTGATGATGTCGATGGTGAATTCGAGAGGATTTCGGAGACCAAGAAGAAGAGAAACCTCGGCTTTAACGAGTTACTCAAATTGGGGGTTGATTCTAGTTTTCTGTCTAATTTGGAGGGTCCTCGGTTGAGGGATTCTCGTAGCAATCCGAAACTCGATGGCAGTAAAAAAGGAGAGAATTTGGGCCTCAAGAAGCGGAATTCTTCCTCTAACCGTGAGACAATTCTTTCGGATTCGCCTTCTGTGAAGAAATGGGTCGGGTTGAGTTTCAAAGATGTCGATCCCAAAACTTTTATTGGATTAGAATGCAAGGTCTATTGGCCATTGGATACTGATTGGTATTCGGGTCGCATTGTGGGTTACAACTCTGACACTAATAGACATCATGTTGAATATGAAGATGCTGATGAGGAGGATTTGCTTCTATCAAGCGAGAGAATCAAGTTTTATATCTCTCAAGAAGAAATGGAAAGTTTGAGTTTGAGTTGCAGTCCAAAGAGTACAAACAGTGATGTCTATGATTATAATGAAATGGTTGTGTTGGCTGCGAGTTTGGATGACTGCCAAGAACTAGAGCCTGGGGATATCGTATGGGCCAAGCTTACTGGTTATGCTATGTGGCCAGCAATTGTGGTGGATGAATCCCTTATTGATCGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

437

Amino Acids

48.98

Weight (kDa)

6.63

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 327 - 356 4.4e-07 PTM/DIR17-like, Tudor domain
PWWP PF00855 410 - 433 1.4e-06 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 45, 1173
AccI GTMKAC 1 cut(s) 555
AclWI GGATC 2 cut(s) 190, 923
AcoI YGGCCR 2 cut(s) 968, 1268
AcsI RAATTY 4 cut(s) 47, 668, 826, 847
AcuI CTGAAG 1 cut(s) 503
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 2 cut(s) 68, 1150
AgsI TTSAA 2 cut(s) 919, 1040
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 1225
AluBI AGCT 3 cut(s) 470, 478, 1249
AluI AGCT 3 cut(s) 470, 478, 1249
Alw26I GTCTC 3 cut(s) 177, 680, 860
AlwI GGATC 2 cut(s) 190, 923
AoxI GGCC 6 cut(s) 567, 575, 832, 968, 1242, 1268
ApeKI GCWGC 1 cut(s) 1193
ApoI RAATTY 4 cut(s) 47, 668, 826, 847
ArsI GACNNNNNNTTYG 2 cut(s) 859, 891
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 5 cut(s) 438, 567, 767, 832, 1242
AsuC2I CCSGG 2 cut(s) 566, 616
AsuHPI GGTGA 2 cut(s) 646, 677
AvaII GGWCC 2 cut(s) 438, 767
BalI TGGCCA 2 cut(s) 970, 1270
BauI CACGAG 1 cut(s) 81
BbvI GCAGC 1 cut(s) 1180
BccI CCATC 4 cut(s) 110, 488, 656, 800
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 1 cut(s) 1227
BciVI GTATCC 1 cut(s) 970
BcnI CCSGG 2 cut(s) 566, 616
BcoDI GTCTC 3 cut(s) 177, 680, 860
BfaI CTAG 2 cut(s) 744, 1220
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 432
BfuI GTATCC 1 cut(s) 970
BisI GCNGC 3 cut(s) 575, 626, 1194
BlsI GCNGC 3 cut(s) 576, 627, 1195
Bme1390I CCNGG 3 cut(s) 566, 616, 1227
Bme18I GGWCC 2 cut(s) 438, 767
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 5 cut(s) 438, 567, 767, 832, 1242
BmiI GGNNCC 2 cut(s) 439, 768
BmrFI CCNGG 3 cut(s) 566, 616, 1227
BmsI GCATC 3 cut(s) 490, 592, 1039
BoxI GACNNNNGTC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 769, 801
BpuEI CTTGAG 3 cut(s) 311, 821, 1089
BpuMI CCSGG 2 cut(s) 566, 616
Bsa29I ATCGAT 1 cut(s) 1303
BsaBI GATNNNNATC 2 cut(s) 513, 927
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 4 cut(s) 312, 706, 770, 1226
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse118I RCCGGY 2 cut(s) 503, 628
Bse1I ACTGG 1 cut(s) 1258
Bse3DI GCAATG 1 cut(s) 583
Bse8I GATNNNNATC 2 cut(s) 513, 927
BseBI CCWGG 1 cut(s) 1227
BseCI ATCGAT 1 cut(s) 1303
BseDI CCNNGG 4 cut(s) 312, 706, 770, 1226
BseGI GGATG 3 cut(s) 357, 1210, 1291
BseJI GATNNNNATC 2 cut(s) 513, 927
BseMI GCAATG 1 cut(s) 583
BseNI ACTGG 1 cut(s) 1258
BseRI GAGGAG 3 cut(s) 111, 580, 1073
BseXI GCAGC 1 cut(s) 1180
Bsh1285I CGRYCG 1 cut(s) 1307
BshFI GGCC 6 cut(s) 569, 577, 834, 970, 1244, 1270
BshVI ATCGAT 1 cut(s) 1303
BsiEI CGRYCG 1 cut(s) 1307
BsiSI CCGG 4 cut(s) 504, 565, 616, 629
BsmAI GTCTC 3 cut(s) 177, 680, 860
BsmI GAATGC 1 cut(s) 959
BsnI GGCC 6 cut(s) 569, 577, 834, 970, 1244, 1270
Bso31I GGTCTC 1 cut(s) 680
Bsp143I GATC 5 cut(s) 195, 508, 928, 1300, 1304
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 6 cut(s) 569, 577, 834, 970, 1244, 1270
BspDI ATCGAT 1 cut(s) 1303
BspLI GGNNCC 2 cut(s) 439, 768
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 2 cut(s) 190, 923
BspTNI GGTCTC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 583
BsrFI RCCGGY 2 cut(s) 503, 628
BsrI ACTGG 1 cut(s) 1258
BssAI RCCGGY 2 cut(s) 503, 628
BssECI CCNNGG 4 cut(s) 312, 706, 770, 1226
BssMI GATC 5 cut(s) 195, 508, 928, 1300, 1304
BssNI GRCGYC 1 cut(s) 345
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 1227
Bst4CI ACNGT 2 cut(s) 863, 1157
Bst6I CTCTTC 2 cut(s) 211, 692
BstACI GRCGYC 1 cut(s) 345
BstC8I GCNNGC 8 cut(s) 133, 433, 472, 476, 505, 612, 630, 1272
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 357, 1210, 1291
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 5 cut(s) 198, 511, 931, 1303, 1307
BstMAI GTCTC 3 cut(s) 177, 680, 860
BstMBI GATC 5 cut(s) 195, 508, 928, 1300, 1304
BstMCI CGRYCG 1 cut(s) 1307
BstMWI GCNNNNNNNGC 2 cut(s) 504, 611
BstNI CCWGG 1 cut(s) 1227
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 3 cut(s) 564, 614, 1225
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 1180
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 1303
BsuI GTATCC 1 cut(s) 970
BsuRI GGCC 6 cut(s) 569, 577, 834, 970, 1244, 1270
BsuTUI ATCGAT 1 cut(s) 1303
BtgI CCRYGG 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 513
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 3 cut(s) 357, 1210, 1291
BtsIMutI CAGTG 1 cut(s) 1162
Cac8I GCNNGC 8 cut(s) 133, 433, 472, 476, 505, 612, 630, 1272
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 2 cut(s) 503, 628
Cfr13I GGNCC 5 cut(s) 438, 567, 767, 832, 1242
ClaI ATCGAT 1 cut(s) 1303
CseI GACGC 2 cut(s) 353, 412
Csp6I GTAC 2 cut(s) 67, 1149
CspCI CAANNNNNGTGG 2 cut(s) 1263, 1298
CviAII CATG 3 cut(s) 313, 451, 1034
CviQI GTAC 2 cut(s) 67, 1149
DpnI GATC 5 cut(s) 197, 510, 930, 1302, 1306
DpnII GATC 5 cut(s) 195, 508, 928, 1300, 1304
EaeI YGGCCR 2 cut(s) 968, 1268
Eam1104I CTCTTC 2 cut(s) 211, 692
EarI CTCTTC 2 cut(s) 211, 692
EciI GGCGGA 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 680
Eco32I GATATC 1 cut(s) 1234
Eco47I GGWCC 2 cut(s) 438, 767
Eco57I CTGAAG 1 cut(s) 503
EcoO109I RGGNCCY 2 cut(s) 438, 767
EcoRI GAATTC 2 cut(s) 668, 847
EcoRII CCWGG 1 cut(s) 1225
EcoRV GATATC 1 cut(s) 1234
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 3 cut(s) 316, 454, 1037
FatI CATG 3 cut(s) 312, 450, 1033
FauI CCCGC 3 cut(s) 128, 428, 569
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 575, 626, 1194
FokI GGATG 3 cut(s) 344, 1217, 1298
Fsp4HI GCNGC 3 cut(s) 575, 626, 1194
FspBI CTAG 2 cut(s) 744, 1220
GlaI GCGC 1 cut(s) 430
GluI GCNGC 3 cut(s) 575, 626, 1194
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 6 cut(s) 569, 577, 834, 970, 1244, 1270
HapII CCGG 4 cut(s) 504, 565, 616, 629
HgaI GACGC 2 cut(s) 353, 412
HhaI GCGC 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 3 cut(s) 316, 454, 1037
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HindIII AAGCTT 1 cut(s) 1247
HinfI GANTC 8 cut(s) 61, 112, 514, 740, 782, 881, 1086, 1289
HpaII CCGG 4 cut(s) 504, 565, 616, 629
HphI GGTGA 2 cut(s) 646, 677
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 9 cut(s) 111, 195, 393, 513, 522, 685, 798, 880, 1018
Hpy188III TCNNGA 3 cut(s) 673, 838, 1106
Hpy8I GTNNAC 1 cut(s) 556
Hpy99I CGWCG 4 cut(s) 344, 347, 485, 494
HpyAV CCTTC 3 cut(s) 454, 604, 897
HpyCH4III ACNGT 2 cut(s) 863, 1157
HpyCH4IV ACGT 2 cut(s) 399, 447
HpyCH4V TGCA 3 cut(s) 131, 957, 1137
HpyF10VI GCNNNNNNNGC 2 cut(s) 504, 611
HpySE526I ACGT 2 cut(s) 399, 447
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 3 cut(s) 316, 454, 1037
HspAI GCGC 1 cut(s) 429
KroI GCCGGC 2 cut(s) 503, 628
KroNI GCCGGC 2 cut(s) 505, 630
Kzo9I GATC 5 cut(s) 195, 508, 928, 1300, 1304
LmnI GCTCC 2 cut(s) 153, 593
Lsp1109I GCAGC 1 cut(s) 1180
LweI GCATC 3 cut(s) 490, 592, 1039
MaeI CTAG 2 cut(s) 744, 1220
MaeII ACGT 2 cut(s) 399, 447
MaeIII GTNAC 2 cut(s) 720, 1007
MalI GATC 5 cut(s) 197, 510, 930, 1302, 1306
MboI GATC 5 cut(s) 195, 508, 928, 1300, 1304
MfeI CAATTG 1 cut(s) 1275
MflI RGATCY 1 cut(s) 195
MlsI TGGCCA 2 cut(s) 970, 1270
MluCI AATT 9 cut(s) 32, 47, 668, 728, 757, 826, 847, 870, 1275
MluNI TGGCCA 2 cut(s) 970, 1270
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 2 cut(s) 970, 1270
MreI CGCCGGCG 1 cut(s) 628
MroNI GCCGGC 2 cut(s) 503, 628
MscI TGGCCA 2 cut(s) 970, 1270
MseI TTAA 2 cut(s) 77, 714
Msp20I TGGCCA 2 cut(s) 970, 1270
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 4 cut(s) 504, 565, 616, 629
MspR9I CCNGG 3 cut(s) 566, 616, 1227
MunI CAATTG 1 cut(s) 1275
Mva1269I GAATGC 1 cut(s) 959
MvaI CCWGG 1 cut(s) 1227
MwoI GCNNNNNNNGC 2 cut(s) 504, 611
NaeI GCCGGC 2 cut(s) 505, 630
NciI CCSGG 2 cut(s) 566, 616
NcoI CCATGG 1 cut(s) 312
NdeII GATC 5 cut(s) 195, 508, 928, 1300, 1304
NgoMIV GCCGGC 2 cut(s) 503, 628
NlaIII CATG 3 cut(s) 316, 454, 1037
NlaIV GGNNCC 2 cut(s) 439, 768
NmeAIII GCCGAG 2 cut(s) 206, 687
PcsI WCGNNNNNNNCGW 5 cut(s) 351, 486, 489, 495, 714
PctI GAATGC 1 cut(s) 959
PdiI GCCGGC 2 cut(s) 505, 630
PfeI GAWTC 8 cut(s) 61, 112, 514, 740, 782, 881, 1086, 1289
PkrI GCNGC 3 cut(s) 576, 627, 1195
Ple19I CGATCG 1 cut(s) 1307
PpuMI RGGWCCY 2 cut(s) 438, 767
PshAI GACNNNNGTC 1 cut(s) 189
PsiI TTATAA 2 cut(s) 45, 1173
Psp5II RGGWCCY 2 cut(s) 438, 767
Psp6I CCWGG 1 cut(s) 1225
PspGI CCWGG 1 cut(s) 1225
PspN4I GGNNCC 2 cut(s) 439, 768
PspPI GGNCC 5 cut(s) 438, 567, 767, 832, 1242
PspPPI RGGWCCY 2 cut(s) 438, 767
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 195
PvuI CGATCG 1 cut(s) 1307
RsaI GTAC 2 cut(s) 68, 1150
RsaNI GTAC 2 cut(s) 67, 1149
SaqAI TTAA 2 cut(s) 77, 714
SatI GCNGC 3 cut(s) 575, 626, 1194
Sau3AI GATC 5 cut(s) 195, 508, 928, 1300, 1304
Sau96I GGNCC 5 cut(s) 438, 567, 767, 832, 1242
ScrFI CCNGG 3 cut(s) 566, 616, 1227
SfaNI GCATC 3 cut(s) 490, 592, 1039
SfcI CTRYAG 1 cut(s) 129
SgrAI CRCCGGYG 1 cut(s) 628
SinI GGWCC 2 cut(s) 438, 767
SmlI CTYRAG 3 cut(s) 326, 836, 1104
SmoI CTYRAG 3 cut(s) 326, 836, 1104
Sse9I AATT 9 cut(s) 32, 47, 668, 728, 757, 826, 847, 870, 1275
SspMI CTAG 2 cut(s) 744, 1220
StyD4I CCNGG 3 cut(s) 564, 614, 1225
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 863, 1157
TaiI ACGT 2 cut(s) 402, 450
TaqI TCGA 8 cut(s) 480, 489, 600, 660, 672, 804, 927, 1303
TasI AATT 9 cut(s) 32, 47, 668, 728, 757, 826, 847, 870, 1275
TatI WGTACW 1 cut(s) 1148
TauI GCSGC 2 cut(s) 577, 628
TfiI GAWTC 8 cut(s) 61, 112, 514, 740, 782, 881, 1086, 1289
Tru1I TTAA 2 cut(s) 77, 714
Tru9I TTAA 2 cut(s) 77, 714
TscAI CASTG 1 cut(s) 1162
TseI GCWGC 1 cut(s) 1193
TspDTI ATGAA 3 cut(s) 1059, 1191, 1302
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 1162
VpaK11BI GGWCC 2 cut(s) 438, 767
XapI RAATTY 4 cut(s) 47, 668, 826, 847
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 2 cut(s) 744, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.