pycom14g01640
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0015724
Physical Location & Seq
Reverse (-)
1208214 .. 1209914
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g01640.1

Sequence Viewer

Length: 699 bp
ATGTATTTGTCTTTTCACTACAAGAATTGCAAGTATATGAGGCAATTTTACTTTCATTCAAATCTCAGCAAACTCACTAATGCAGAAACCCCAACCGTCCAAAGCCCCCACATCCCCCGCCGTTCCGGATCTGACACACCCTCCTTTTCCTTTTCGGGGAACCAACATCAGCTCTCGGGGATGCGAAAGAAAAGAAGGAAGTCGTTAAGTGAAGAAATTACAGCAAAAAGTTCTTCAGAAATTGCTGGTGCTTCGAATCATGCACCAAAGAAAGGAATGGTTTTGCCCTTCCAACCCCTTTCGCTTGCGTTTAACCATGTGAACTGCTTTGTGCATATGCCCCCTACTCTTCGAGTTGAAGAAGATCGCCTTCAATTGCTACGAGAAGTCAGTGGTGCTTTTAGACCGGGAATATTGACAGCGCTTGTAGGTGTTAGTGGTGCTGGAAAGACAACTCTTATGGACGTCCTGGCAGGTAGAAAGACTGGTGGATACATCAAGGGGACCATTAACATATCTGGTTATCCAAAGAACCAAGAAACATTTGCTCGTGTATGCGGTTATTGTGAACAGAATGACATCCATTCCCCCCATGTTACTGTCTATGAATCTCTCCTGTATTCAACATGGCTCTGTCTTGCTTCTGATGTCAATACACAAACACGAAAGGTATGTTGCACTGGAATCTTTCTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

233

Amino Acids

25.83

Weight (kDa)

9.51

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 127 - 214 3.9e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 464
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 2 cut(s) 118, 558
AclWI GGATC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 465
AfeI AGCGCT 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 156, 272
AgsI TTSAA 4 cut(s) 60, 359, 374, 624
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
AlwI GGATC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 423
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 408
AsuII TTCGAA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 504
BauI CACGAG 1 cut(s) 549
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 470
BciVI GTATCC 1 cut(s) 485
BcnI CCSGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 697
BfoI RGCGCY 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 464
BfuI GTATCC 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 408, 470
Bme18I GGWCC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 2 cut(s) 161, 505
BmrFI CCNGG 2 cut(s) 408, 470
BmsI GCATC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 272
Bse1I ACTGG 2 cut(s) 490, 685
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 1 cut(s) 470
BseGI GGATG 3 cut(s) 111, 186, 579
BseLI CCNNNNNNNGG 2 cut(s) 156, 272
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 490, 685
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 126, 407
BslFI GGGAC 1 cut(s) 517
BslI CCNNNNNNNGG 2 cut(s) 156, 272
BsmFI GGGAC 1 cut(s) 517
BsoBI CYCGRG 1 cut(s) 175
Bsp119I TTCGAA 1 cut(s) 254
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 2 cut(s) 128, 364
BspACI CCGC 2 cut(s) 118, 558
BspCNI CTCAG 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 161, 505
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 254
BsrI ACTGG 2 cut(s) 490, 685
BssMI GATC 2 cut(s) 128, 364
BssNI GRCGYC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 97, 601
Bst6I CTCTTC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 465
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 3 cut(s) 111, 186, 579
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 2 cut(s) 131, 367
BstMBI GATC 2 cut(s) 128, 364
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 406, 468
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuI GTATCC 1 cut(s) 485
BtsCI GGATG 3 cut(s) 111, 186, 579
BtsIMutI CAGTG 2 cut(s) 397, 678
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 504
CviAII CATG 4 cut(s) 260, 317, 593, 627
CviJI RGCY 3 cut(s) 105, 172, 631
CviKI_1 RGCY 3 cut(s) 105, 172, 631
DdeI CTNAG 1 cut(s) 65
DpnI GATC 2 cut(s) 130, 366
DpnII GATC 2 cut(s) 128, 364
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 504
Eco47III AGCGCT 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 468
FaeI CATG 4 cut(s) 263, 320, 596, 630
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 517
FatI CATG 4 cut(s) 259, 316, 592, 626
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 1 cut(s) 336
FokI GGATG 3 cut(s) 98, 193, 566
FspBI CTAG 1 cut(s) 697
GlaI GCGC 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 425
HapII CCGG 2 cut(s) 126, 407
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 4 cut(s) 263, 320, 596, 630
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 3 cut(s) 256, 608, 684
HpaII CCGG 2 cut(s) 126, 407
Hpy166II GTNNAC 2 cut(s) 322, 569
Hpy188I TCNGA 3 cut(s) 133, 238, 646
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 2 cut(s) 322, 569
HpyAV CCTTC 3 cut(s) 189, 298, 380
HpyCH4III ACNGT 2 cut(s) 97, 601
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 5 cut(s) 30, 83, 263, 334, 678
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 465
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 4 cut(s) 263, 320, 596, 630
HspAI GCGC 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 2 cut(s) 128, 364
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 697
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 595
MalI GATC 2 cut(s) 130, 366
MboI GATC 2 cut(s) 128, 364
MboII GAAGA 5 cut(s) 224, 225, 341, 371, 374
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 1 cut(s) 128
MluCI AATT 5 cut(s) 25, 44, 216, 240, 374
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 2 cut(s) 33, 151
MroI TCCGGA 1 cut(s) 125
MseI TTAA 3 cut(s) 206, 312, 510
MspI CCGG 2 cut(s) 126, 407
MspR9I CCNGG 2 cut(s) 408, 470
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 470
NciI CCSGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 336
NdeII GATC 2 cut(s) 128, 364
NlaIII CATG 4 cut(s) 263, 320, 596, 630
NlaIV GGNNCC 2 cut(s) 161, 505
NspV TTCGAA 1 cut(s) 254
PfeI GAWTC 3 cut(s) 256, 608, 684
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 161, 505
PspPI GGNCC 1 cut(s) 504
PsuI RGATCY 1 cut(s) 128
SaqAI TTAA 3 cut(s) 206, 312, 510
Sau3AI GATC 2 cut(s) 128, 364
Sau96I GGNCC 1 cut(s) 504
ScrFI CCNGG 2 cut(s) 408, 470
SetI ASST 5 cut(s) 174, 433, 468, 478, 672
SfaNI GCATC 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 254
SinI GGWCC 1 cut(s) 504
Sse9I AATT 5 cut(s) 25, 44, 216, 240, 374
SsiI CCGC 2 cut(s) 118, 558
SspI AATATT 1 cut(s) 414
SspMI CTAG 1 cut(s) 697
StyD4I CCNGG 2 cut(s) 406, 468
TaaI ACNGT 2 cut(s) 97, 601
TaiI ACGT 1 cut(s) 468
TaqI TCGA 2 cut(s) 254, 352
TasI AATT 5 cut(s) 25, 44, 216, 240, 374
TfiI GAWTC 3 cut(s) 256, 608, 684
Tru1I TTAA 3 cut(s) 206, 312, 510
Tru9I TTAA 3 cut(s) 206, 312, 510
TscAI CASTG 2 cut(s) 397, 685
TspDTI ATGAA 2 cut(s) 44, 621
TspRI CASTG 2 cut(s) 397, 685
VpaK11BI GGWCC 1 cut(s) 504
XspI CTAG 1 cut(s) 697
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.