Rroxscaffold_2G00091580
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015724
Physical Location & Seq
Forward (+)
13101915 .. 13103196
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091580.1

Sequence Viewer

Length: 243 bp
ATGGCTTTGGGTCTCTTCCGGACAGTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCATTACTTGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGCGGAAAACTGTCTGCATGA

Protein Analysis

80

Amino Acids

8.04

Weight (kDa)

9.52

Isoelectric Point (pI)

25.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 43 - 75 2.6e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 2 cut(s) 141, 225
AclWI GGATC 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 25
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 3 cut(s) 74, 170, 191
AluI AGCT 3 cut(s) 74, 170, 191
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 144
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 18
BseBI CCWGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 2 cut(s) 141, 225
BspEI TCCGGA 1 cut(s) 18
BspPI GGATC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 51
BssMI GATC 1 cut(s) 68
BssNAI GTATAC 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 25, 234
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 154
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 5, 74, 170, 191
CviKI_1 RGCY 4 cut(s) 5, 74, 170, 191
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 154
FaeI CATG 1 cut(s) 243
FaiI YATR 3 cut(s) 47, 104, 241
FatI CATG 1 cut(s) 239
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 75
HapII CCGG 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 243
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 19
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 25, 234
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 38, 77, 121, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 32, 120, 141, 168, 177, 207
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 38
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 93
MalI GATC 1 cut(s) 70
MbiI CCGCTC 1 cut(s) 141
MboI GATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 7
MroI TCCGGA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 206
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 156
SetI ASST 6 cut(s) 76, 103, 160, 172, 193, 216
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SsiI CCGC 2 cut(s) 141, 225
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 2 cut(s) 25, 234
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 113, 131
TfiI GAWTC 1 cut(s) 110
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 183
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.