Rh2AG413200
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015724
Physical Location & Seq
Forward (+)
61328623 .. 61361207
32585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG413200.1

Sequence Viewer

Length: 1068 bp
ATGATTTCTTTGCGTTTATATCTTCCACTGATATTCTTAGCGAATGCAGTTCACTGTGGCACACTGATCAAGTCTCTTCCGGGTTTCTTTGGTGAACTTCCTTTCAACCTCTATACTGGATGGAGACCCCAAAGTAGACCGTTTGTTGCTTTGGTACAGTGGAGACCTTGGTTTCTGGTTTTAATGGCCTCATTTATCAAAATGGTACTGTCTTTTTCACTCTCGGACTACATTCGCATACTGGATGAAGGAGGTACTTATTACTACCCATACTCATGGACAAGGGAAGAGTTGTACCTCACAGCTTATATAGAAAGGGATGGTAAAGGTTCCGACATAATCCATAACATGATGTGGAAAGTGATGATCATTAACATCCCCAAAAGAAGCTGTTCTTCAAATTCTAATGGAGAAGAAGTCAACTTCCCTGACAAGGCCAAGATAGAAGCAATAGTGCAAGAAGCTGCTCAAGGAACCATATCTAGCAATGACGCTCTTAATCTACGATTAGAGAATCAGGTAGTGTTATGCCAGAAAGAGGGTTGTTCGGTTCAAATTCATCAGTACTGCCTAGGAAAACTGTTTGCTAAGAAAAAGGAGATGAAGGAAGAAGGAATAACATATGAGAGGCCACAACTACTTCGTGAAGTAACCGGTGCCTTCAGGCCTGGGGTTTTGACCTCTCTAATAGGGATCAGTGGGGCAGGGAAAACAACTTTGATGGATGTCTTAGCAGGAGGAAAAACAGGTGGCTATGTTGAGGGTGACATCAGAATATCCGGGTTCCCTAAGAAACAAGAAACCTTTGCAAGAATTTCTGGTTATTGTGAACAAACTGATATCCGCTCACCCCAAGTCATTGTCAAAGAGTCGCTAATTTACTTGGCTTTCCTTGGGCTCCCTAAAGAAGTCAGCAAACAGGACAAGATGGCTGTTCCTGGAGTGCCAAACATTAAAGAGAAGTATAATCCGGTGACATGGATGCTTGAAGTGAGCTCAGTAGGAACTGAAGTCAAACTTGGAATGGACTTTGCTCAACACTACAAATCATCTTCCTTGCATCAGTAA

Protein Analysis

355

Amino Acids

39.94

Weight (kDa)

8.71

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 215 - 307 3e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 846
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 844
AclWI GGATC 1 cut(s) 701
AcsI RAATTY 3 cut(s) 400, 555, 813
AcuI CTGAAG 2 cut(s) 646, 1029
AfaI GTAC 5 cut(s) 156, 207, 256, 296, 566
AfiI CCNNNNNNNGG 2 cut(s) 433, 538
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 4 cut(s) 106, 399, 554, 989
AjnI CCWGG 2 cut(s) 667, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 1002, 1034
AluBI AGCT 4 cut(s) 305, 390, 464, 996
AluI AGCT 4 cut(s) 305, 390, 464, 996
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 3 cut(s) 78, 118, 157
AlwI GGATC 1 cut(s) 701
AoxI GGCC 4 cut(s) 186, 435, 629, 665
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 3 cut(s) 400, 555, 813
AsiGI ACCGGT 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 391
AspA2I CCTAGG 1 cut(s) 571
AsuC2I CCSGG 2 cut(s) 81, 781
AsuHPI GGTGA 4 cut(s) 104, 776, 840, 985
AvrII CCTAGG 1 cut(s) 571
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 2 cut(s) 900, 998
Bbv12I GWGCWC 1 cut(s) 998
BbvI GCAGC 1 cut(s) 451
BccI CCATC 4 cut(s) 114, 314, 715, 922
BciT130I CCWGG 2 cut(s) 669, 939
BclI TGATCA 2 cut(s) 66, 366
BcnI CCSGG 2 cut(s) 81, 781
BcoDI GTCTC 3 cut(s) 78, 118, 157
BfaI CTAG 2 cut(s) 483, 572
BisI GCNGC 1 cut(s) 465
BlnI CCTAGG 1 cut(s) 571
BlsI GCNGC 1 cut(s) 466
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 4 cut(s) 81, 669, 781, 939
BmiI GGNNCC 5 cut(s) 331, 475, 658, 785, 899
BmrFI CCNGG 4 cut(s) 81, 669, 781, 939
BmsI GCATC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 453
BpuMI CCSGG 2 cut(s) 81, 781
BsaI GGTCTC 2 cut(s) 118, 157
BsaJI CCNNGG 4 cut(s) 167, 571, 668, 892
BsaWI WCCGGW 2 cut(s) 653, 970
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 538
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 121, 246
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 2 cut(s) 669, 939
BseDI CCNNGG 4 cut(s) 167, 571, 668, 892
BseGI GGATG 6 cut(s) 125, 250, 325, 375, 730, 987
BseLI CCNNNNNNNGG 2 cut(s) 433, 538
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 1011
BseNI ACTGG 2 cut(s) 121, 246
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 4 cut(s) 188, 437, 631, 667
BshNI GGYRCC 1 cut(s) 656
BshTI ACCGGT 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 998
BsiSI CCGG 4 cut(s) 80, 654, 780, 971
BslI CCNNNNNNNGG 2 cut(s) 433, 538
BsmAI GTCTC 3 cut(s) 78, 118, 157
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 4 cut(s) 188, 437, 631, 667
Bso31I GGTCTC 2 cut(s) 118, 157
Bsp1286I GDGCHC 2 cut(s) 900, 998
Bsp143I GATC 3 cut(s) 66, 366, 693
BspACI CCGC 1 cut(s) 844
BspANI GGCC 4 cut(s) 188, 437, 631, 667
BspCNI CTCAG 1 cut(s) 1010
BspLI GGNNCC 5 cut(s) 331, 475, 658, 785, 899
BspPI GGATC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 2 cut(s) 118, 157
BsrBI CCGCTC 1 cut(s) 846
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 2 cut(s) 121, 246
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 4 cut(s) 167, 571, 668, 892
BssMI GATC 3 cut(s) 66, 366, 693
BssT1I CCWWGG 3 cut(s) 167, 571, 892
Bst2UI CCWGG 2 cut(s) 669, 939
Bst4CI ACNGT 5 cut(s) 56, 141, 159, 210, 582
Bst6I CTCTTC 2 cut(s) 81, 282
BstDEI CTNAG 5 cut(s) 37, 588, 730, 789, 997
BstF5I GGATG 6 cut(s) 125, 250, 325, 375, 730, 987
BstKTI GATC 3 cut(s) 69, 369, 696
BstMAI GTCTC 3 cut(s) 78, 118, 157
BstMBI GATC 3 cut(s) 66, 366, 693
BstNI CCWGG 2 cut(s) 669, 939
BstSCI CCNGG 4 cut(s) 79, 667, 779, 937
BstV1I GCAGC 1 cut(s) 451
BstXI CCANNNNNNTGG 1 cut(s) 276
BsuRI GGCC 4 cut(s) 188, 437, 631, 667
BtsCI GGATG 6 cut(s) 125, 250, 325, 375, 730, 987
BtsIMutI CAGTG 5 cut(s) 26, 52, 62, 164, 703
Cfr10I RCCGGY 1 cut(s) 653
CseI GACGC 1 cut(s) 500
Csp6I GTAC 5 cut(s) 155, 206, 255, 295, 565
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 3 cut(s) 276, 349, 978
CviQI GTAC 5 cut(s) 155, 206, 255, 295, 565
DdeI CTNAG 5 cut(s) 37, 588, 730, 789, 997
DpnI GATC 3 cut(s) 68, 368, 695
DpnII GATC 3 cut(s) 66, 366, 693
Eam1104I CTCTTC 2 cut(s) 81, 282
EarI CTCTTC 2 cut(s) 81, 282
Ecl136II GAGCTC 1 cut(s) 996
Eco130I CCWWGG 3 cut(s) 167, 571, 892
Eco147I AGGCCT 1 cut(s) 667
Eco24I GRGCYC 2 cut(s) 900, 998
Eco31I GGTCTC 2 cut(s) 118, 157
Eco32I GATATC 1 cut(s) 841
Eco53kI GAGCTC 1 cut(s) 996
Eco57I CTGAAG 2 cut(s) 646, 1029
EcoICRI GAGCTC 1 cut(s) 996
EcoRII CCWGG 2 cut(s) 667, 937
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 3 cut(s) 167, 571, 892
EcoT38I GRGCYC 2 cut(s) 900, 998
ErhI CCWWGG 3 cut(s) 167, 571, 892
FaeI CATG 3 cut(s) 279, 352, 981
FalI AAGNNNNNCTT 4 cut(s) 379, 411, 1002, 1034
FatI CATG 3 cut(s) 275, 348, 977
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 2 cut(s) 66, 366
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 6 cut(s) 132, 257, 332, 362, 737, 994
FriOI GRGCYC 2 cut(s) 900, 998
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 483, 572
GluI GCNGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 960
HaeIII GGCC 4 cut(s) 188, 437, 631, 667
HapII CCGG 4 cut(s) 80, 654, 780, 971
HgaI GACGC 1 cut(s) 500
Hin1II CATG 3 cut(s) 279, 352, 981
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 2 cut(s) 514, 869
HpaII CCGG 4 cut(s) 80, 654, 780, 971
HphI GGTGA 4 cut(s) 104, 776, 840, 985
Hpy166II GTNNAC 5 cut(s) 52, 95, 137, 421, 830
Hpy188I TCNGA 3 cut(s) 226, 334, 773
Hpy188III TCNNGA 1 cut(s) 644
Hpy8I GTNNAC 5 cut(s) 52, 95, 137, 421, 830
HpyAV CCTTC 4 cut(s) 242, 598, 605, 670
HpyCH4III ACNGT 5 cut(s) 56, 141, 159, 210, 582
HpyCH4V TGCA 4 cut(s) 47, 457, 809, 1060
HpyF3I CTNAG 5 cut(s) 37, 588, 730, 789, 997
Hsp92II CATG 3 cut(s) 279, 352, 981
Ksp22I TGATCA 2 cut(s) 66, 366
Kzo9I GATC 3 cut(s) 66, 366, 693
LmnI GCTCC 1 cut(s) 903
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 972
MaeI CTAG 2 cut(s) 483, 572
MaeIII GTNAC 3 cut(s) 649, 764, 973
MalI GATC 3 cut(s) 68, 368, 695
MbiI CCGCTC 1 cut(s) 846
MboI GATC 3 cut(s) 66, 366, 693
MboII GAAGA 7 cut(s) 14, 68, 299, 387, 425, 620, 1044
MhlI GDGCHC 2 cut(s) 900, 998
MluCI AATT 4 cut(s) 400, 555, 813, 876
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 9 cut(s) 119, 199, 245, 308, 532, 621, 691, 731, 754
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 4 cut(s) 182, 372, 498, 954
MslI CAYNNNNRTG 1 cut(s) 274
MspI CCGG 4 cut(s) 80, 654, 780, 971
MspR9I CCNGG 4 cut(s) 81, 669, 781, 939
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 2 cut(s) 669, 939
NciI CCSGG 2 cut(s) 81, 781
NdeI CATATG 1 cut(s) 622
NdeII GATC 3 cut(s) 66, 366, 693
NlaIII CATG 3 cut(s) 279, 352, 981
NlaIV GGNNCC 5 cut(s) 331, 475, 658, 785, 899
NmuCI GTSAC 2 cut(s) 764, 973
PceI AGGCCT 1 cut(s) 667
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 514
PfoI TCCNGGA 1 cut(s) 937
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 1 cut(s) 877
PpsI GAGTC 1 cut(s) 877
Psp124BI GAGCTC 1 cut(s) 998
Psp6I CCWGG 2 cut(s) 667, 937
PspGI CCWGG 2 cut(s) 667, 937
PspN4I GGNNCC 5 cut(s) 331, 475, 658, 785, 899
RsaI GTAC 5 cut(s) 156, 207, 256, 296, 566
RsaNI GTAC 5 cut(s) 155, 206, 255, 295, 565
RseI CAYNNNNRTG 1 cut(s) 274
SacI GAGCTC 1 cut(s) 998
SaqAI TTAA 4 cut(s) 182, 372, 498, 954
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 3 cut(s) 66, 366, 693
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 4 cut(s) 81, 669, 781, 939
SduI GDGCHC 2 cut(s) 900, 998
SfaNI GCATC 1 cut(s) 972
SmiMI CAYNNNNRTG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 4 cut(s) 400, 555, 813, 876
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 1 cut(s) 844
SspMI CTAG 2 cut(s) 483, 572
SstI GAGCTC 1 cut(s) 998
StuI AGGCCT 1 cut(s) 667
StyD4I CCNGG 4 cut(s) 79, 667, 779, 937
StyI CCWWGG 3 cut(s) 167, 571, 892
TaaI ACNGT 5 cut(s) 56, 141, 159, 210, 582
TasI AATT 4 cut(s) 400, 555, 813, 876
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 4 cut(s) 182, 372, 498, 954
Tru9I TTAA 4 cut(s) 182, 372, 498, 954
TscAI CASTG 5 cut(s) 33, 59, 69, 164, 703
TseFI GTSAC 2 cut(s) 764, 973
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 2 cut(s) 764, 973
TspDTI ATGAA 3 cut(s) 261, 548, 617
TspRI CASTG 5 cut(s) 33, 59, 69, 164, 703
XapI RAATTY 3 cut(s) 400, 555, 813
XmaJI CCTAGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 2 cut(s) 483, 572
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.