Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

54319490 .. 54334982

Gene Structure 15493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG399500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAGGAAGAAGGAATAACATATGAGAGGCCACAACTACTTCGTGAAGTAACCGGTGCCTTCAGGCCTGGGGTTTTGACCTCTCTAATAGGGATCAGTGGGGCAGGGAAAACAACTTTGATGGATGTCTTAGCAGGAGGAAAAACAGGTGGCTATGTTGAGGGTGACATCAGAATATCCGGGTTCCCTAAGAAACAAGAAACCTTTGCAAGAATTTCTGGTTATTGTGAACAAACTGATATCCGCTCACCCCAAGTCATTGTCAAAGAGTCGCTAATTTACTTGGCTTTCCTTGGGCTCCCTAAAGAAGTCAGCAAACAGGACAAGATGGCTGTTCCTGGAGTGCCAAACATTAAAGAGAAGTATAATCCGGTGACATGGATGCTTGAAGTGAGCTCAGTAGGAACTGAAGTCAAACTTGGAATGGACTTTGCTCAACACTACAAATCATCTTCCTTGCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

155

Amino Acids

17.0

Weight (kDa)

8.61

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	14 - 110	3.6e-08	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	2 cut(s)	46, 429
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	67, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw21I	GWGCWC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	29, 65
ApoI	RAATTY	1 cut(s)	213
AsiGI	ACCGGT	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	176, 240, 385
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	2 cut(s)	300, 398
Bbv12I	GWGCWC	1 cut(s)	398
BccI	CCATC	2 cut(s)	115, 322
BciT130I	CCWGG	2 cut(s)	69, 339
BcnI	CCSGG	1 cut(s)	181
Bme1390I	CCNGG	3 cut(s)	69, 181, 339
BmiI	GGNNCC	3 cut(s)	58, 185, 299
BmrFI	CCNGG	3 cut(s)	69, 181, 339
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	68, 292
BsaWI	WCCGGW	2 cut(s)	53, 370
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	69, 339
BseDI	CCNNGG	2 cut(s)	68, 292
BseGI	GGATG	2 cut(s)	130, 387
BseMII	CTCAG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	31, 67
BshNI	GGYRCC	1 cut(s)	56
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	54, 180, 371
BsnI	GGCC	2 cut(s)	31, 67
Bsp1286I	GDGCHC	2 cut(s)	300, 398
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	2 cut(s)	31, 67
BspCNI	CTCAG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	58, 185, 299
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	68, 292
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	69, 339
BstDEI	CTNAG	3 cut(s)	130, 189, 397
BstF5I	GGATG	2 cut(s)	130, 387
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstNI	CCWGG	2 cut(s)	69, 339
BstSCI	CCNGG	3 cut(s)	67, 179, 337
BsuRI	GGCC	2 cut(s)	31, 67
BtsCI	GGATG	2 cut(s)	130, 387
BtsIMutI	CAGTG	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	53
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	1 cut(s)	378
CviJI	RGCY	7 cut(s)	31, 67, 153, 287, 298, 332, 396
CviKI_1	RGCY	7 cut(s)	31, 67, 153, 287, 298, 332, 396
DdeI	CTNAG	3 cut(s)	130, 189, 397
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	300, 398
Eco32I	GATATC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	2 cut(s)	46, 429
EcoICRI	GAGCTC	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	67, 337
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	2 cut(s)	300, 398
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	381
FaiI	YATR	5 cut(s)	22, 24, 156, 366, 379
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	1 cut(s)	377
FauNDI	CATATG	1 cut(s)	22
FokI	GGATG	2 cut(s)	137, 394
FriOI	GRGCYC	2 cut(s)	300, 398
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	31, 67
HapII	CCGG	3 cut(s)	54, 180, 371
Hin1II	CATG	1 cut(s)	381
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	3 cut(s)	54, 180, 371
HphI	GGTGA	3 cut(s)	176, 240, 385
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	5, 70
HpyCH4V	TGCA	2 cut(s)	209, 460
HpyF3I	CTNAG	3 cut(s)	130, 189, 397
Hsp92II	CATG	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	303
LweI	GCATC	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	49, 164, 373
MalI	GATC	1 cut(s)	95
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	20, 444
MhlI	GDGCHC	2 cut(s)	300, 398
MluCI	AATT	2 cut(s)	213, 276
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	21, 91, 131, 154
MseI	TTAA	1 cut(s)	354
MspI	CCGG	3 cut(s)	54, 180, 371
MspR9I	CCNGG	3 cut(s)	69, 181, 339
MvaI	CCWGG	2 cut(s)	69, 339
NciI	CCSGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	381
NlaIV	GGNNCC	3 cut(s)	58, 185, 299
NmuCI	GTSAC	2 cut(s)	164, 373
PceI	AGGCCT	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	53
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	67, 337
PspGI	CCWGG	2 cut(s)	67, 337
PspN4I	GGNNCC	3 cut(s)	58, 185, 299
SacI	GAGCTC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	69, 181, 339
SduI	GDGCHC	2 cut(s)	300, 398
SetI	ASST	4 cut(s)	83, 151, 206, 398
SfaNI	GCATC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	213, 276
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	244
SstI	GAGCTC	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	3 cut(s)	67, 179, 337
StyI	CCWWGG	1 cut(s)	292
TasI	AATT	2 cut(s)	213, 276
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	2 cut(s)	164, 373
Tsp45I	GTSAC	2 cut(s)	164, 373
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.